TCONS_00051096 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051096
Unique NameTCONS_00051096
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1656

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051096 ID=TCONS_00051096|Name=TCONS_00051096|organism=Clytia hemisphaerica|type=transcript|length=1656bp
agcattttttgtaattttggcgagaacttaattTGGAGAATGacctaaaa
aataattttggtgggaactaaatttggcgaatttcgaGTTCGCTCGCtaa
tttcgccaaaattagtccTCGCAAAAATAAATCCCCTTAAGGTAGGTTCt
gacaaaaatttgaatcaCGTGCAAGAAAACATTATTCTTCAACAATTTAT
TTTTCCAAAGCAAGCAAGCAAGATTCTACAGAGAATCTGCTAAAAGTTTT
CAATCAAGTTTCTTTCTCATGTTTTGCTTTAACCAAACGAAGTATTGATA
AAACAAGAAACTGCATAATATTTCGTATCACTGGAAATAGCAACAGTACA
ATTTCTTATTTACGCTGCCTCTTGAACGAATACCATCATAAACTACAGTA
CCTTTTTACCGCTTTGTACAAGCAGGCAAATAATTATATGTAATAATTCT
TTCCCTTTTTTTCATATATTGTTAATTATGCTACATTAGTTGTTTTCACC
AAACTATACTAAGCCTTGTTGAGACTTTGTTTCATTCGACTCATCACAGA
TGGTGATTGTTTAAAAGGTAAAATTTGGTTGATCATACATTAATCGTACC
CTAACAACCATGAGAGGATTGGGTTGGACTTTACCAGGTTTTTAATGACG
TCAAAAGTTCCTGTATCTTTGAGTCGTATGTCGTATACGATGGTTTCAGA
AATTCGACCTTGATTGACCCTAGAAAACTTAAATCCGATCCCCTTGGACA
GTTTTTTTAAGATAGGTTGATATGTTTGTAATTCATTTGAATCCAATACA
TAGTTCCAGGAAGTAAAGTGGATGCATTCATAAGACTCAATCTCACTTAC
TCAATTTCACTGCCATCTCAATAAAGATCCGAAATGTAAAATCCACGTTC
TGTTAGTAGTTCCAGCTAAtacaatattattttttatgaagCAACCACGA
TCAAATCTGGTGGTTGGCTGGTGTTACACGTATCACTGGAGCTTCCACAA
CCATCCTTAATTGTTGCGATATCCATCCAACATAAAGGACATTTTTTCTG
TTCAGCAAGCCATTTGACTANGTATCACTGGAGCTTCCACAACCATCCTT
AATTGTTGCGATATCCATCCAACATAAAGGACATTTTTTCTGTTCAGCAA
GCCATTTGACTATACACAAAACATGAAAGAAATGATTACATTTAAACGAG
CAGATTTGTTTATTAGTATCGAAAGGTTCTTTACAAATTACACATTCATC
CATTGCAGTTTTGGTAACAGCCGTCTGGAAACTGATCACATTTATCTTGT
CGTAAAACTTGATTATATCTGCCGAACGGTCGTTGGCACTCCAGCAACAG
TATAATATAAAGTCGCAAAATTTAACAGTTAATCCTGAATCGAGTGTCAC
GACAATGTCACCgtttaaatgttttgatttgcgGAAGACCTTGTATCGAC
ATCTCCCAAGTATCCATAGAACCACTAGTATAACGGAAAATACAAGGACC
AGTGGTATCAAGAAGTTTTTGAATTCCATTGTAGATGCATTGACCATATT
ATTTTTGCCACCAAAATGTTTATATTATGAggtgtttgaattttttatat
agtttttaaagctctctttattttatttgtttttattttctcattttctg
tCAAGA
Run BLAST on NCBI

protein sequence of TCONS_00051096-protein

>TCONS_00051096-protein ID=TCONS_00051096-protein|Name=TCONS_00051096-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
MVNASTMEFKNFLIPLVLVFSVILVVLWILGRCRYKVFRKSKHLNGDIVV
TLDSGLTVKFCDFILYCCWSANDRSADIIKFYDKINVISFQTAVTKTAMD
ECVICKEPFDTNKQICSFKCNHFFHVLCIVKWLAEQKKCPLCWMDIATIK
DGCGSSSDX
Run BLAST on NCBI

transcript from alignment at scaffold_193:234450..236105

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051096 ID=TCONS_00051096|Name=TCONS_00051096|organism=Clytia hemisphaerica|type=transcript|length=1656bp|location=Sequence derived from alignment at scaffold_193:234450..236105 (Clytia hemisphaerica)
TCTTGacagaaaatgagaaaataaaaacaaataaaataaagagagcttta aaaactatataaaaaattcaaacaccTCATAATATAAACATTTTGGTGGC AAAAATAATATGGTCAATGCATCTACAATGGAATTCAAAAACTTCTTGAT ACCACTGGTCCTTGTATTTTCCGTTATACTAGTGGTTCTATGGATACTTG GGAGATGTCGATACAAGGTCTTCcgcaaatcaaaacatttaaacGGTGAC ATTGTCGTGACACTCGATTCAGGATTAACTGTTAAATTTTGCGACTTTAT ATTATACTGTTGCTGGAGTGCCAACGACCGTTCGGCAGATATAATCAAGT TTTACGACAAGATAAATGTGATCAGTTTCCAGACGGCTGTTACCAAAACT GCAATGGATGAATGTGTAATTTGTAAAGAACCTTTCGATACTAATAAACA AATCTGCTCGTTTAAATGTAATCATTTCTTTCATGTTTTGTGTATAGTCA AATGGCTTGCTGAACAGAAAAAATGTCCTTTATGTTGGATGGATATCGCA ACAATTAAGGATGGTTGTGGAAGCTCCAGTGATACNTAGTCAAATGGCTT GCTGAACAGAAAAAATGTCCTTTATGTTGGATGGATATCGCAACAATTAA GGATGGTTGTGGAAGCTCCAGTGATACGTGTAACACCAGCCAACCACCAG ATTTGATCGTGGTTGcttcataaaaaataatattgtaTTAGCTGGAACTA CTAACAGAACGTGGATTTTACATTTCGGATCTTTATTGAGATGGCAGTGA AATTGAGTAAGTGAGATTGAGTCTTATGAATGCATCCACTTTACTTCCTG GAACTATGTATTGGATTCAAATGAATTACAAACATATCAACCTATCTTAA AAAAACTGTCCAAGGGGATCGGATTTAAGTTTTCTAGGGTCAATCAAGGT CGAATTTCTGAAACCATCGTATACGACATACGACTCAAAGATACAGGAAC TTTTGACGTCATTAAAAACCTGGTAAAGTCCAACCCAATCCTCTCATGGT TGTTAGGGTACGATTAATGTATGATCAACCAAATTTTACCTTTTAAACAA TCACCATCTGTGATGAGTCGAATGAAACAAAGTCTCAACAAGGCTTAGTA TAGTTTGGTGAAAACAACTAATGTAGCATAATTAACAATATATGAAAAAA AGGGAAAGAATTATTACATATAATTATTTGCCTGCTTGTACAAAGCGGTA AAAAGGTACTGTAGTTTATGATGGTATTCGTTCAAGAGGCAGCGTAAATA AGAAATTGTACTGTTGCTATTTCCAGTGATACGAAATATTATGCAGTTTC TTGTTTTATCAATACTTCGTTTGGTTAAAGCAAAACATGAGAAAGAAACT TGATTGAAAACTTTTAGCAGATTCTCTGTAGAATCTTGCTTGCTTGCTTT GGAAAAATAAATTGTTGAAGAATAATGTTTTCTTGCACGtgattcaaatt tttgtcaGAACCTACCTTAAGGGGATTTATTTTTGCGAggactaattttg gcgaaattaGCGAGCGAACtcgaaattcgccaaatttagttcccaccaaa attattttttaggtCATTCTCCAaattaagttctcgccaaaattacaaaa aatgct

Coding sequence (CDS) from alignment at scaffold_193:234450..236105

>TCONS_00051096 ID=TCONS_00051096|Name=TCONS_00051096|organism=Clytia hemisphaerica|type=CDS|length=480bp|location=Sequence derived from alignment at scaffold_193:234450..236105 (Clytia hemisphaerica)
ATGGTCAATGCATCTACAATGGAATTCAAAAACTTCTTGATACCACTGGT
CCTTGTATTTTCCGTTATACTAGTGGTTCTATGGATACTTGGGAGATGTC
GATACAAGGTCTTCcgcaaatcaaaacatttaaacGGTGACATTGTCGTG
ACACTCGATTCAGGATTAACTGTTAAATTTTGCGACTTTATATTATACTG
TTGCTGGAGTGCCAACGACCGTTCGGCAGATATAATCAAGTTTTACGACA
AGATAAATGTGATCAGTTTCCAGACGGCTGTTACCAAAACTGCAATGGAT
GAATGTGTAATTTGTAAAGAACCTTTCGATACTAATAAACAAATCTGCTC
GTTTAAATGTAATCATTTCTTTCATGTTTTGTGTATAGTCAAATGGCTTG
CTGAACAGAAAAAATGTCCTTTATGTTGGATGGATATCGCAACAATTAAG
GATGGTTGTGGAAGCTCCAGTGATACNTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032389XLOC_032389Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051096-proteinTCONS_00051096-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051096-exon-scaffold_193-1491911889:234450..236105TCONS_00051096-exon-scaffold_193-1491911889:234450..236105Clytia hemisphaericaexon
TCONS_00051096-exon-scaffold_193-1510915933:234450..236105TCONS_00051096-exon-scaffold_193-1510915933:234450..236105Clytia hemisphaericaexon
TCONS_00051096-exon-scaffold_193-1575043694:234450..236105TCONS_00051096-exon-scaffold_193-1575043694:234450..236105Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_193supercontigscaffold_193:234450..236105 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0735544 0.119545 0.0555214 0.162957 0.132256 0.313532 3.12067 3.45272 2.74791 1.86821 2.33497 1.94314 0.945762 0.660434 0.153144 0.179288 0.865067 1.32057 3.07547 2.67279 2.22832 2.08129 0.955808 2.428 1.63209 2.13792 3.82209 2.93182 0 0.027726
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00051096 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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