TCONS_00051022 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051022
Unique NameTCONS_00051022
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1173

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051022 ID=TCONS_00051022|Name=TCONS_00051022|organism=Clytia hemisphaerica|type=transcript|length=1173bp
GTGCTCCATGACAAAGTGCATGCGTGCATGTTCAAAACAACACGTCCGAA
GCTTCGAAACCCAGGTCGATACATTTGCTGTCTTCCTCTACACACCCCCA
GTTGAAATTCAGTTTGTAATTGAAAACGAAACAGAAAAGTCACATTTGAA
AATGGCATCTACTGAACCACTTAGAGTTTGTGTCACAGGAGCAGCTGGTC
AAATTGCTTACTCCCTCTTATATAGCATCGGTAATGGAGATGTCTTTGGT
AAATCTCAGCCAATTACCTTACTCTTATTGGATATCCCACCAATGATGCC
AGTCTTGGAAGGAGTTGTAATGGAATTACAAGATTGCTCTCTTCCCTTAC
TTCATGAAGTCGTTGGAACTGCTGATCCAAATGTCTCATTCAATAATGTT
GATGCTGCCATCTTGGTTGGTGCTATGCCAAGAAGAGAAGGAATGGAAAG
GAAAGATCTTTTGAAAGCTAATGCTAAAATCTTTGAAGACCAAGGAAAGG
CTCTTGATCAATACGCAAAGAAGACGGTCAAGattttggTTGTAGGAAAC
CCAGCAAACACTAACTGTCTGATCGCTTCCAAATGTGCACCAAGTATTCC
AAAAGAAAATTTCTCATGTCTCACAAAATTAGATCAAAACAGAGCTATTT
CACAGGTTGCAATGAGACTCGGTATCAAAACATGTGACGTCAGCAAGGTT
ATCATTTGGGGAAACCACTCATCCACACAATACCCTGATGTTCAACACGG
GTTCGTCAATCTGAACGGTCAAGCAGTCCCAATTACTGAGGCTGTTAAAG
ATGATAATTGGATTCAAGGAGAATTCTTAAGGACTGTTCAAACGCGTGGT
GCGGCCATCATAAAAGCGAGAAAATTATCAAGTGCCATGTCCGCTGCGAA
AGCCATTTGTGACCACATGCGCGTTTGGTGGTTCGGAACCGCCGAAGGTG
AATACATGAGCATGGGTGTTATCACTGACGGCACACATTACGGAATCCCT
GAAGATATCGTTTATTCTTTCCCACTGACGATCGGTGCGGGCCACAAATA
CACAATCGTCGATGGTTTAGAAATCAATGCCTTCTCTCGGCAAAAGATGG
ATCTCTCAGCTAAGGAATTAGTGGAGGAAAGAGATGTCGCGTTAGCGTTC
TTGAAAAAGGAATGAGTTAAANA
Run BLAST on NCBI

transcript from alignment at scaffold_192:49010..53308-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051022 ID=TCONS_00051022|Name=TCONS_00051022|organism=Clytia hemisphaerica|type=transcript|length=4299bp|location=Sequence derived from alignment at scaffold_192:49010..53308- (Clytia hemisphaerica)
GTGCTCCATGACAAAGTGCATGCGTGCATGTTCAAAACAACACGTCCGAA
GCTTCGAAACCCAGGTCGATACATTTGCTGTCTTCCTCTACACACCCCCA
GTTGAAATTCAGTTTGTAATTGAAAACGAAACAGAAAAGTCACATTTGAA
AATGGTAAGATTCTTTTTATTTTCGTTTGATTTTTCTTGATAAAAAACTG
GACAGTTTGCGTTTACAACCCACGATATGGCCAGAAAATAACTCAAACAA
TTTTGGTTTTTGTTTGGGCCAACAGCAAAACATTCTTTTGGTCCAAATAT
TGATGTTTTATGTCCAAGTTTGGGTCACAAAAAGTTTTATTTTTAACTCC
AAAAGCCCAGCCCAAACACGTCTCAACACGAATATACACAGACCAGTTCA
GACCATAAAATATGACCCATATAAACACGCACACAAAACTTTTGAAATTT
TCGCCTCTGAATGAAAAACTACTAACTTAACCAGGCTGGGTTCAGGACTT
TTTCAAGTTCAAAATCCCCAAGGGGTTGTGGTTGTGGGAATCATATGACG
TTTTGCTTTTCTGCTTCTTTTGCACCTTCATCTTCCCATTGGGCTATTCC
ATTTTTAAACCATACAGGGGTATTGACGAACTTTTCCAGGGGGGTCTGAG
CCTTGATTTTCCAGGGGGTTCTCTCCTCCTAAACTGGCATCAATAGACCT
TTTCGCCTTTCCGTCCGCCATCTTGAATTGTATGCAAAAATACAGGAACA
AAAATGTCGTGGTTGGATTTAGTTGAAATGTATGCAAAACATATGCAAGT
TTACACAAAGATTAAAAAGACAACAAAGCATCTTATAAATAAATATTATA
ATCATTANGGCCGATGGCTTTTTCCTTTTTCACAAAATTTCACTTTCCAT
CCAGGCGTGTCGACCTAATTTTCCAGGGGATAGTTTGTTATCCAAAATTT
CCAGGGGGGTTAGTGAAAAAAGTTTGTCAATACCCCCTGTATAATTTTTT
TTTGGAATAGCCCAATATTGTATTTGAATTTTCTGGATTTTTCAATTTTT
GGTTTAAATTTTTTTAAACAATCAGCACTCAGGAAGGTCAAAGTTTGCCA
GAGGACATGGTCCATCAGATGACATAGGTGTGTCGCCCTATTTGGTCAGA
AAAATAAAAAATAAATATAAAAACTCTTTAAAAAAGTTATTTTTAACTTC
CTACGAATTTCCATTTTATTTATTACAAATTTGGCTTCGAAAACACTATT
TGATATTCCCTGGAGCAGCACAAACTTGTTGAACTGAATTGGGTTATAAA
ACTGATCAAACACTCACGATTTTTTACAAAATTTCAATTATTGATTTATT
ACTGTGAGATCGGGTAACTTGCATCAGTGGAGGCTAACATGCATTGCCAT
CAAATGAGTGACCAATCAAAGCAGCAAAATTTCAAAACAAATGAACTACA
CAGCTCCGCTCGCAATCTACTCTACCATTTTTGTTTTGATTTAACTTTGT
ATTTTATTAAGTCATTCATTTGAGGGCTATGCATGTTTGCCTCCAATGAT
GCAAGTTACCCGATCTCACGGTAAATGTCAAGAGTTGGGTCAAGCTTGAT
TTAAAGATTAGTTCAATAAGTTTGATTGATCGTGACTTCACTTTTTTTAT
AGGCAAAAGCTTGTTAATCCTCGTTAATCCTGGGTCAGAGCAGGATTAAT
ATTTGGCCAATTTAATCAGAATTTAATCCAGATTTAAGCCTATTTTTTTT
CGAACAACTGACGATTCTGCATTAATCGGCGCTAACAGGCGCTAATCGAG
ATTTAATCGAAAATTAAGCTAATCGGCCGCTAATCCACTTTTGAACAACC
GTGCCCTTGACAATAAAAATTGAGTTTTGAATTCTTTTATATTTCAGGCA
TCTACTGAACCACTTAGAGTTTGTGTCACAGGAGCAGCTGGTCAAATTGC
TTACTCCCTCTTATATAGCATCGGTAATGGAGATGTCTTTGGTAAATCTC
AGGTTGGTCTTATTGATTATTTTGTTATAATAGAAAGTTTTAACATTTTA
AATTGATGTTGATACTTCATATCAATCAAATAATCCTGTTCTAAGCAATG
ATCAGTCTACATCATTCTCCATACCCTCAAGAGAGTCAAAAAATATTGTG
TCTGATATTTCCCTGTTCTCTTTTTATTCTAGCCAATTACCTTACTCTTA
TTGGATATCCCACCAATGATGCCAGTCTTGGAAGGAGTTGTAATGGAATT
ACAAGATTGCTCTCTTCCCTTACTTCATGGTAAGTTCAGCCATCGTTATC
ATCAAAAATTAAGAATTGTTTTTATTTATTTACTAAACAGTTGGTTGACA
AGTCTTTGGCATTCGATTTTTTTTGTGAAATGGTTTGGTTTTTAATCTCT
CTTCTCCTAATTAGAATTCTTCAATTTTACTAAAATAACAAGAGAATTTT
GAAGGAGAGTTTTTGGTATTTATCGTAATCTGTTTAATGTTTATTATTTG
TAGAAGTCGTTGGAACTGCTGATCCAAATGTCTCATTCAATAATGTTGAT
GCTGCCATCTTGGTTGGTGCTATGCCAAGAAGAGAAGGAATGGAAAGGAA
AGATCTTTTGAAAGCTAATGCTAAAATCTTTGAAGACCAAGGAAAGGCTC
TTGATCAATACGCAAAGAAGACGGTCAAGGTACATTTTTCTTTACTTCCT
CTTCCCATGATAAATGTAAACAACATTGTGACAAATTGCACTTCTTGTTT
GTTGGCCACAATATCCTTCCTCTATTCTTGAACAACAAGATTCGAACTCC
TCCCTAGTAATGCCCCTCTTCAGCCCCTCTCAATCCCCGATCAAATTTCA
ATATTTTCTTAACTTTTTTTAATGGATATGTTGTAAAAGATTTTTTAGAA
TGTAACCGTCAATTCTTTTCATTTCATTTAAAAAATATTTTACCTGTAAG
TTAATTAATTTAATGTTTCTTACTTTTTCTTTAGATTTTGGTTGTAGGAA
ACCCAGCAAACACTAACTGTCTGATCGCTTCCAAATGTGCACCAAGTATT
CCAAAAGAAAATTTCTCATGTCTCACAAAATTAGATCAAAACAGAGCTAT
TTCACAGGTAATTTCGTTATCTGGGTTCAAGATTTAGAAGATTATGAAAT
TTTATTAAAAGCATAATACGTTAGACAGTTTTTGGGCCGTTCAAAACTTG
CTTTATTAAATTTGTTTTGTTACAAAAAAGAAAAAGTATTCTTGCTCTAG
AGAATCTATCATCTTAAATGTCTAGAACTACAGGTCTACTGTTTCACCAG
AAATAGACTTTATAGAACAATGTTTGATTTCAGGTTGCAATGAGACTCGG
TATCAAAACATGTGACGTCAGCAAGGTTATCATTTGGGGAAACCACTCAT
CCACACAATACCCTGATGTTCAACACGGGTTCGTCAATCTGAACGGTCAA
GCAGTCCCAATTACTGAGGCTGTTAAAGATGATAATTGGATTCAAGGAGA
ATTCTTAAGGGTACATAAGCTGTTCGTTCATATTTTATCTGTCCTCCTAA
GACTGCCTAAGACACAATAGCGAGTTTATGTATTCGAGATAAATCGAGGG
GGCGGTACAAAGCAAAGTTGACATGGGGCCGAAATCACCGTCCACTTTGC
TCGACGAGGTTAAAAACACCAAGATACCGTCGTCTGTTAAGGTGAGCAAA
AGCGATATAGAGCCGAACATCAACAATCGACTTTGTTTTGTATCGATTTC
AACTACCGTCGCCCTCGATATCCTCCGATACATAAACTCGGTAATAAAAG
AAACAGAAACTTAATTCTCCACAATGTCATGATAGAGAAAGTTTATGCAT
GAAGAGAATTAAAGTGTGATATGAAATCCGATCCTCAAATCACATCTTTA
AAAAAACATATTTCATATGACACATTTAATAATCCTGCATAACTTCCTGT
TTTTATAGACTGTTCAAACGCGTGGTGCGGCCATCATAAAAGCGAGAAAA
TTATCAAGTGCCATGTCCGCTGCGAAAGCCATTTGTGACCACATGCGCGT
TTGGTGGTTCGGAACCGCCGAAGGTGAATACATGAGCATGGGTGTTATCA
CTGACGGCACACATTACGGAATCCCTGAAGATATCGTTTATTCTTTCCCA
CTGACGATCGGTGCGGGCCACAAATACACAATCGTCGATGGTTTAGAAAT
CAATGCCTTCTCTCGGCAAAAGATGGATCTCTCAGCTAAGGAATTAGTGG
AGGAAAGAGATGTCGCGTTAGCGTTCTTGAAAAAGGAATGAGTTAAANA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032340XLOC_032340Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051022-exon-scaffold_192-1575043694:53155..53308TCONS_00051022-exon-scaffold_192-1575043694:53155..53308Clytia hemisphaericaexon
TCONS_00051022-exon-scaffold_192-1575043694:51307..51411TCONS_00051022-exon-scaffold_192-1575043694:51307..51411Clytia hemisphaericaexon
TCONS_00051022-exon-scaffold_192-1575043694:51030..51126TCONS_00051022-exon-scaffold_192-1575043694:51030..51126Clytia hemisphaericaexon
TCONS_00051022-exon-scaffold_192-1575043694:50630..50805TCONS_00051022-exon-scaffold_192-1575043694:50630..50805Clytia hemisphaericaexon
TCONS_00051022-exon-scaffold_192-1575043694:50202..50324TCONS_00051022-exon-scaffold_192-1575043694:50202..50324Clytia hemisphaericaexon
TCONS_00051022-exon-scaffold_192-1575043694:49799..49975TCONS_00051022-exon-scaffold_192-1575043694:49799..49975Clytia hemisphaericaexon
TCONS_00051022-exon-scaffold_192-1575043694:49010..49350TCONS_00051022-exon-scaffold_192-1575043694:49010..49350Clytia hemisphaericaexon
TCONS_00051022-exon-scaffold_192-1510915933:53155..53308TCONS_00051022-exon-scaffold_192-1510915933:53155..53308Clytia hemisphaericaexon
TCONS_00051022-exon-scaffold_192-1510915933:51307..51411TCONS_00051022-exon-scaffold_192-1510915933:51307..51411Clytia hemisphaericaexon
TCONS_00051022-exon-scaffold_192-1510915933:51030..51126TCONS_00051022-exon-scaffold_192-1510915933:51030..51126Clytia hemisphaericaexon
TCONS_00051022-exon-scaffold_192-1510915933:50630..50805TCONS_00051022-exon-scaffold_192-1510915933:50630..50805Clytia hemisphaericaexon
TCONS_00051022-exon-scaffold_192-1510915933:50202..50324TCONS_00051022-exon-scaffold_192-1510915933:50202..50324Clytia hemisphaericaexon
TCONS_00051022-exon-scaffold_192-1510915933:49799..49975TCONS_00051022-exon-scaffold_192-1510915933:49799..49975Clytia hemisphaericaexon
TCONS_00051022-exon-scaffold_192-1510915933:49010..49350TCONS_00051022-exon-scaffold_192-1510915933:49010..49350Clytia hemisphaericaexon
TCONS_00051022-exon-scaffold_192-1491911889:53155..53308TCONS_00051022-exon-scaffold_192-1491911889:53155..53308Clytia hemisphaericaexon
TCONS_00051022-exon-scaffold_192-1491911889:51307..51411TCONS_00051022-exon-scaffold_192-1491911889:51307..51411Clytia hemisphaericaexon
TCONS_00051022-exon-scaffold_192-1491911889:51030..51126TCONS_00051022-exon-scaffold_192-1491911889:51030..51126Clytia hemisphaericaexon
TCONS_00051022-exon-scaffold_192-1491911889:50630..50805TCONS_00051022-exon-scaffold_192-1491911889:50630..50805Clytia hemisphaericaexon
TCONS_00051022-exon-scaffold_192-1491911889:50202..50324TCONS_00051022-exon-scaffold_192-1491911889:50202..50324Clytia hemisphaericaexon
TCONS_00051022-exon-scaffold_192-1491911889:49799..49975TCONS_00051022-exon-scaffold_192-1491911889:49799..49975Clytia hemisphaericaexon
TCONS_00051022-exon-scaffold_192-1491911889:49010..49350TCONS_00051022-exon-scaffold_192-1491911889:49010..49350Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_192supercontigscaffold_192:49010..53308 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
229.186	236.967	137.983	150.652	117.359	98.9511	202.346	215.076	82.3369	95.9127	45.2271	85.8789	64.367	41.5513	71.7188	83.1452	109.749	67.2726	10.2255	35.8409	49.5648	70.9794	102.756	108.029	172.436	159.53	134.747	67.3349	76.8291	53.6171
Blast
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BLAST of TCONS_00051022 vs. Swiss-Prot (Human)
Match: MDHC (Malate dehydrogenase, cytoplasmic OS=Homo sapiens GN=MDH1 PE=1 SV=4)

HSP 1 Score: 493.426 bits (1269), Expect = 3.033e-174
Identity = 230/331 (69.49%), Postives = 277/331 (83.69%), Query Frame = 2 
Query:  161 TEPLRVCVTGAAGQIAYSLLYSIGNGDVFGKSQPITLLLLDIPPMMPVLEGVVMELQDCSLPLLHEVVGTADPNVSFNNVDAAILVGAMPRREGMERKDLLKANAKIFEDQGKALDQYAKKTVKILVVGNPANTNCLIASKCAPSIPKENFSCLTKLDQNRAISQVAMRLGIKTCDVSKVIIWGNHSSTQYPDVQHGFVNLNGQAVPITEAVKDDNWIQGEFLRTVQTRGAAIIKARKLSSAMSAAKAICDHMRVWWFGTAEGEYMSMGVITDGTHYGIPEDIVYSFPLTIGAGHKYTIVDGLEINAFSRQKMDLSAKELVEERDVALAFL 1153
            +EP+RV VTGAAGQIAYSLLYSIGNG VFGK QPI L+LLDI PMM VL+GV+MELQDC+LPLL +V+ T   +V+F ++D AILVG+MPRREGMERKDLLKAN KIF+ QG ALD+YAKK+VK++VVGNPANTNCL ASK APSIPKENFSCLT+LD NRA +Q+A++LG+   DV  VIIWGNHSSTQYPDV H  V L G+ V + EA+KDD+W++GEF+ TVQ RGAA+IKARKLSSAMSAAKAICDH+R  WFGT EGE++SMGVI+DG  YG+P+D++YSFP+ I     +  V+GL IN FSR+KMDL+AKEL EE++ A  FL
Sbjct:    2 SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTANDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFVTTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVI-KNKTWKFVEGLPINDFSREKMDLTAKELTEEKESAFEFL 331
The following BLAST results are available for this feature:
BLAST of TCONS_00051022 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MDHC3.033e-17469.49Malate dehydrogenase, cytoplasmic OS=Homo sapiens ... [more]
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