TCONS_00051015 (transcript) - C. hemisphaerica

Overview
NameTCONS_00051015
Unique NameTCONS_00051015
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1507

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00051015 ID=TCONS_00051015|Name=TCONS_00051015|organism=Clytia hemisphaerica|type=transcript|length=1507bp
TTCGAAACCCAGGTCGATACATTTGCTGTCTTCCTCTACACACCCCCAGT
TGAAATTCAGTTTGTAATTGAAAACGAAACAGAAAAGTCACATTTGAAAA
TGGCATCTACTGAACCACTTAGAGTTTGTGTCACAGGAGCAGCTGGTCAA
ATTGCTTACTCCCTCTTATATAGCATCGGTAATGGAGATGTCTTTGGTAA
ATCTCAGCCAATTACCTTACTCTTATTGGATATCCCACCAATGATGCCAG
TCTTGGAAGGAGTTGTAATGGAATTACAAGATTGCTCTCTTCCCTTACTT
CATGAAGTCGTTGGAACTGCTGATCCAAATGTCTCATTCAATAATGTTGA
TGCTGCCATCTTGGTTGGTGCTATGCCAAGAAGAGAAGGAATGGAAAGGA
AAGATCTTTTGAAAGCTAATGCTAAAATCTTTGAAGACCAAGGAAAGGCT
CTTGATCAATACGCAAAGAAGACGGTCAAGattttggTTGTAGGAAACCC
AGCAAACACTAACTGTCTGATCGCTTCCAAATGTGCACCAAGTATTCCAA
AAGAAAATTTCTCATGTCTCACAAAATTAGATCAAAACAGAGCTATTTCA
CAGGTTGCAATGAGACTCGGTATCAAAACATGTGACGTCAGCAAGGTTAT
CATTTGGGGAAACCACTCATCCACACAATACCCTGATGTTCAACACGGGT
TCGTCAATCTGAACGGTCAAGCAGTCCCAATTACTGAGGCTGTTAAAGAT
GATAATTGGATTCAAGGAGAATTCTTAAGGACTGTTCAAACGCGTGGTGC
GGCCATCATAAAAGCGAGAAAATTATCAAGTGCCATGTCCGCTGCGAAAG
CCATTTGTGACCACATGCGCGTTTGGTGGTTCGGAACCGCCGAAGGTGAA
TACATGAGCATGGGTGTTATCACTGACGGCACACATTACGGAATCCCTGA
AGATATCGTTTATTCTTTCCCACTGACGATCGGTGCGGGCCACAAATACA
CAATCGTCGATGGTTTAGAAATCAATGCCTTCTCTCGGCAAAAGATGGAT
CTCTCAGCTAAGGAATTAGTGGAGGAAAGAGATGTCGCGTTAGCGTTCTT
GAAAAAGGAATGAGTTAAAAATGGTAATATGTATAGTTCGGTGGACTTTG
TAGTAAacttctttttagaaaaaatgaaatctttGTCTGCgtaaattttt
ttgtatttagaATTCTTAATGTTGCTCGTTTTTAATACAAATTGACGGTT
GTAAAATGCATGCTAAGTTTATGAGATGTACAATGAATATTAAAGTACTA
ATAACATAATATCTTCTAATCAAGTTTTGATGGTTAGGTGGTATTACTTA
CTAACACTGTTTAAATTTCGTTTactataaaatttgaattttatttatcT
AACGTTATGCATTTTACACCATTGGAATCTTTTTAGTTTTGTAAagtctt
tatttttaaaatacctctGATTAAAAAAATGTGCATAAATAAAATGCTGA
TACAGAT
Run BLAST on NCBI

transcript from alignment at scaffold_192:45588..54560-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00051015 ID=TCONS_00051015|Name=TCONS_00051015|organism=Clytia hemisphaerica|type=transcript|length=8973bp|location=Sequence derived from alignment at scaffold_192:45588..54560- (Clytia hemisphaerica)
TTCGAAACCCAGGTCGATACATTTGCTGTCTTCCTCTACACACCCCCAGT
TGAAATTCAGTTTGTAATTGAAAACGAAACAGAAAAGTCACATTTGAAAA
TGGTAAGATTCTTTTTATTTTCGTTTGATTTTTCTTGATAAAAAACTGGA
CAGTTTGCGTTTACAACCCACGATATGGCCAGAAAATAACTCAAACAATT
TTGGTTTTTGTTTGGGCCAACAGCAAAACATTCTTTTGGTCCAAATATTG
ATGTTTTATGTCCAAGTTTGGGTCACAAAAAGTTTTATTTTTAACTCCAA
AAGCCCAGCCCAAACACGTCTCAACACGAATATACACAGACCAGTTCAGA
CCATAAAATATGACCCATATAAACACGCACACAAAACTTTTGAAATTTTC
GCCTCTGAATGAAAAACTACTAACTTAACCAGGCTGGGTTCAGGACTTTT
TCAAGTTCAAAATCCCCAAGGGGTTGTGGTTGTGGGAATCATATGACGTT
TTGCTTTTCTGCTTCTTTTGCACCTTCATCTTCCCATTGGGCTATTCCAT
TTTTAAACCATACAGGGGTATTGACGAACTTTTCCAGGNATGTAATGGTC
TTTTGAAGTGCTTGTTCTAAGAGATGAGTGAATATAATTGTTTTTAGTTT
TCAAGAGAAGCAAATTTAATCTTTTTTCTACAAGATTAACTTTAATATAA
CGCAAATTATGCATGCAAGTTTTTATTTAATACTTTCTTTTTGCATATGT
TTTGCATACTTTCTAAGGGAATTTCACCACAGCAATTCGGCCACCATAAT
TTTTGCATACAATTCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTT
TCATTGGAAAGTCTATCAGTCATTTTCTTCTGTCTTCTTTTGAAAGAGTA
TTGAAAATCGACAAAGCAAAAGCTGAGCTGATTGCTCACCAAAAGTTTTG
CTGTGTGGAGACCATGTATAAACAAAGATCATGGAAACTGTTCGGTAAAA
TATTTGCTTTTCGTTCTGCAAATTACCGCTCTGGATCTAGCCTCAGTGAT
CTAATTTTTTATTTGATACTGTAGGAAATATTGCTGGATATTTTGCTTTT
GATAACAAATTAAAGGTTTAAAATGCTTTGCTTTTTAAAAAACTTTCGAA
ATTCTTCAAATCTTTTATATTTTCCACTACCACGAATTTCAAATTCTTTT
ATTTGGAGAATAGGCTAAATCAATGATCATGCGCTGTGACGTCATAGTTC
ACGTGCTCCATGACAAAGTGCATGCGTGCATGTTCAAAACAACACGTCCG
AAGCTTCGAAACCCAGGTCGATACATTTGCTGTCTTCCTCTACACACCCC
CAGTTGAAATTCAGTTTGTAATTGAAAACGAAACAGAAAAGTCACATTTG
AAAATGGTAAGATTCTTTTTATTTTCGTTTGATTTTTCTTGATAAAAAAC
TGGACAGTTTGCGTTTACAACCCACGATATGGCCAGAAAATAACTCAAAC
AATTTTGGTTTTTGTTTGGGCCAACAGCAAAACATTCTTTTGGTCCAAAT
ATTGATGTTTTATGTCCAAGTTTGGGTCACAAAAAGTTTTATTTTTAACT
CCAAAAGCCCAGCCCAAACACGTCTCAACACGAATATACACAGACCAGTT
CAGACCATAAAATATGACCCATATAAACACGCACACAAAACTTTTGAAAT
TTTCGCCTCTGAATGAAAAACTACTAACTTAACCAGGCTGGGTTCAGGAC
TTTTTCAAGTTCAAAATCCCCAAGGGGTTGTGGTTGTGGGAATCATATGA
CGTTTTGCTTTTCTGCTTCTTTTGCACCTTCATCTTCCCATTGGGCTATT
CCATTTTTAAACCATACAGGGGTATTGACGAACTTTTCCAGGGGGGTCTG
AGCCTTGATTTTCCAGGGGGTTCTCTCCTCCTAAACTGGCATCAATAGAC
CTTTTCGCCTTTCCGTCCGCCATCTTGAATTGTATGCAAAAATACAGGAA
CAAAAATGTCGTGGTTGGATTTAGTTGAAATGTATGCAAAACATATGCAA
GTTTACACAAAGATTAAAAAGACAACAAAGCATCTTATAAATAAATATTA
TAATCATTANGGCCGATGGCTTTTTCCTTTTTCACAAAATTTCACTTTCC
ATCCAGGCGTGTCGACCTAATTTTCCAGGGGATAGTTTGTTATCCAAAAT
TTCCAGGGGGGTTAGTGAAAAAAGTTTGTCAATACCCCCTGTATAATTTT
TTTTTGGAATAGCCCAATATTGTATTTGAATTTTCTGGATTTTTCAATTT
TTGGTTTAAATTTTTTTAAACAATCAGCACTCAGGAAGGTCAAAGTTTGC
CAGAGGACATGGTCCATCAGATGACATAGGTGTGTCGCCCTATTTGGTCA
GAAAAATAAAAAATAAATATAAAAACTCTTTAAAAAAGTTATTTTTAACT
TCCTACGAATTTCCATTTTATTTATTACAAATTTGGCTTCGAAAACACTA
TTTGATATTCCCTGGAGCAGCACAAACTTGTTGAACTGAATTGGGTTATA
AAACTGATCAAACACTCACGATTTTTTACAAAATTTCAATTATTGATTTA
TTACTGTGAGATCGGGTAACTTGCATCAGTGGAGGCTAACATGCATTGCC
ATCAAATGAGTGACCAATCAAAGCAGCAAAATTTCAAAACAAATGAACTA
CACAGCTCCGCTCGCAATCTACTCTACCATTTTTGTTTTGATTTAACTTT
GTATTTTATTAAGTCATTCATTTGAGGGCTATGCATGTTTGCCTCCAATG
ATGCAAGTTACCCGATCTCACGGTAAATGTCAAGAGTTGGGTCAAGCTTG
ATTTAAAGATTAGTTCAATAAGTTTGATTGATCGTGACTTCACTTTTTTT
ATAGGCAAAAGCTTGTTAATCCTCGTTAATCCTGGGTCAGAGCAGGATTA
ATATTTGGCCAATTTAATCAGAATTTAATCCAGATTTAAGCCTATTTTTT
TTCGAACAACTGACGATTCTGCATTAATCGGCGCTAACAGGCGCTAATCG
AGATTTAATCGAAAATTAAGCTAATCGGCCGCTAATCCACTTTTGAACAA
CCGTGCCCTTGACAATAAAAATTGAGTTTTGAATTCTTTTATATTTCAGG
CATCTACTGAACCACTTAGAGTTTGTGTCACAGGAGCAGCTGGTCAAATT
GCTTACTCCCTCTTATATAGCATCGGTAATGGAGATGTCTTTGGTAAATC
TCAGGTTGGTCTTATTGATTATTTTGTTATAATAGAAAGTTTTAACATTT
TAAATTGATGTTGATACTTCATATCAATCAAATAATCCTGTTCTAAGCAA
TGATCAGTCTACATCATTCTCCATACCCTCAAGAGAGTCAAAAAATATTG
TGTCTGATATTTCCCTGTTCTCTTTTTATTCTAGCCAATTACCTTACTCT
TATTGGATATCCCACCAATGATGCCAGTCTTGGAAGGAGTTGTAATGGAA
TTACAAGATTGCTCTCTTCCCTTACTTCATGGTAAGTTCAGCCATCGTTA
TCATCAAAAATTAAGAATTGTTTTTATTTATTTACTAAACAGTTGGTTGA
CAAGTCTTTGGCATTCGATTTTTTTTGTGAAATGGTTTGGTTTTTAATCT
CTCTTCTCCTAATTAGAATTCTTCAATTTTACTAAAATAACAAGAGAATT
TTGAAGGAGAGTTTTTGGTATTTATCGTAATCTGTTTAATGTTTATTATT
TGTAGAAGTCGTTGGAACTGCTGATCCAAATGTCTCATTCAATAATGTTG
ATGCTGCCATCTTGGTTGGTGCTATGCCAAGAAGAGAAGGAATGGAAAGG
AAAGATCTTTTGAAAGCTAATGCTAAAATCTTTGAAGACCAAGGAAAGGC
TCTTGATCAATACGCAAAGAAGACGGTCAAGGTACATTTTTCTTTACTTC
CTCTTCCCATGATAAATGTAAACAACATTGTGACAAATTGCACTTCTTGT
TTGTTGGCCACAATATCCTTCCTCTATTCTTGAACAACAAGATTCGAACT
CCTCCCTAGTAATGCCCCTCTTCAGCCCCTCTCAATCCCCGATCAAATTT
CAATATTTTCTTAACTTTTTTTAATGGATATGTTGTAAAAGATTTTTTAG
AATGTAACCGTCAATTCTTTTCATTTCATTTAAAAAATATTTTACCTGTA
AGTTAATTAATTTAATGTTTCTTACTTTTTCTTTAGATTTTGGTTGTAGG
AAACCCAGCAAACACTAACTGTCTGATCGCTTCCAAATGTGCACCAAGTA
TTCCAAAAGAAAATTTCTCATGTCTCACAAAATTAGATCAAAACAGAGCT
ATTTCACAGGTAATTTCGTTATCTGGGTTCAAGATTTAGAAGATTATGAA
ATTTTATTAAAAGCATAATACGTTAGACAGTTTTTGGGCCGTTCAAAACT
TGCTTTATTAAATTTGTTTTGTTACAAAAAAGAAAAAGTATTCTTGCTCT
AGAGAATCTATCATCTTAAATGTCTAGAACTACAGGTCTACTGTTTCACC
AGAAATAGACTTTATAGAACAATGTTTGATTTCAGGTTGCAATGAGACTC
GGTATCAAAACATGTGACGTCAGCAAGGTTATCATTTGGGGAAACCACTC
ATCCACACAATACCCTGATGTTCAACACGGGTTCGTCAATCTGAACGGTC
AAGCAGTCCCAATTACTGAGGCTGTTAAAGATGATAATTGGATTCAAGGA
GAATTCTTAAGGGTACATAAGCTGTTCGTTCATATTTTATCTGTCCTCCT
AAGACTGCCTAAGACACAATAGCGAGTTTATGTATTCGAGATAAATCGAG
GGGGCGGTACAAAGCAAAGTTGACATGGGGCCGAAATCACCGTCCACTTT
GCTCGACGAGGTTAAAAACACCAAGATACCGTCGTCTGTTAAGGTGAGCA
AAAGCGATATAGAGCCGAACATCAACAATCGACTTTGTTTTGTATCGATT
TCAACTACCGTCGCCCTCGATATCCTCCGATACATAAACTCGGTAATAAA
AGAAACAGAAACTTAATTCTCCACAATGTCATGATAGAGAAAGTTTATGC
ATGAAGAGAATTAAAGTGTGATATGAAATCCGATCCTCAAATCACATCTT
TAAAAAAACATATTTCATATGACACATTTAATAATCCTGCATAACTTCCT
GTTTTTATAGACTGTTCAAACGCGTGGTGCGGCCATCATAAAAGCGAGAA
AATTATCAAGTGCCATGTCCGCTGCGAAAGCCATTTGTGACCACATGCGC
GTTTGGTGGTTCGGAACCGCCGAAGGTGAATACATGAGCATGGGTGTTAT
CACTGACGGCACACATTACGGAATCCCTGAAGATATCGTTTATTCTTTCC
CACTGACGATCGGTGCGGGCCACAAATACACAATCGTCGATGGTTTAGAA
ATCAATGCCTTCTCTCGGCAAAAGATGGATCTCTCAGCTAAGGAATTAGT
GGAGGAAAGAGATGTCGCGTTAGCGTTCTTGAAAAAGGAATGAGTTAAAN
ACTTGCTTTATTAAATTTGTTTTGTTACAAAAAAGAAAAAGTATTCTTGC
TCTAGAGAATCTATCATCTTAAATGTCTAGAACTACAGGTCTACTGTTTC
ACCAGAAATAGACTTTATAGAACAATGTTTGATTTCAGGTTGCAATGAGA
CTCGGTATCAAAACATGTGACGTCAGCAAGGTTATCATTTGGGGAAACCA
CTCATCCACACAATACCCTGATGTTCAACACGGGTTCGTCAATCTGAACG
GTCAAGCAGTCCCAATTACTGAGGCTGTTAAAGATGATAATTGGATTCAA
GGAGAATTCTTAAGGGTACATAAGCTGTTCGTTCATATTTTATCTGTCCT
CCTAAGACTGCCTAAGACACAATAGCGAGTTTATGTATTCGAGATAAATC
GAGGGGGCGGTACAAAGCAAAGTTGACATGGGGCCGAAATCACCGTCCAC
TTTGCTCGACGAGGTTAAAAACACCAAGATACCGTCGTCTGTTAAGGTGA
GCAAAAGCGATATAGAGCCGAACATCAACAATCGACTTTGTTTTGTATCG
ATTTCAACTACCGTCGCCCTCGATATCCTCCGATACATAAACTCGGTAAT
AAAAGAAACAGAAACTTAATTCTCCACAATGTCATGATAGAGAAAGTTTA
TGCATGAAGAGAATTAAAGTGTGATATGAAATCCGATCCTCAAATCACAT
CTTTAAAAAAACATATTTCATATGACACATTTAATAATCCTGCATAACTT
CCTGTTTTTATAGACTGTTCAAACGCGTGGTGCGGCCATCATAAAAGCGA
GAAAATTATCAAGTGCCATGTCCGCTGCGAAAGCCATTTGTGACCACATG
CGCGTTTGGTGGTTCGGAACCGCCGAAGGTGAATACATGAGCATGGGTGT
TATCACTGACGGCACACATTACGGAATCCCTGAAGATATCGTTTATTCTT
TCCCACTGACGATCGGTGCGGGCCACAAATACACAATCGTCGATGGTTTA
GAAATCAATGCCTTCTCTCGGCAAAAGATGGATCTCTCAGCTAAGGAATT
AGTGGAGGAAAGAGATGTCGCGTTAGCGTTCTTGAAAAAGGAATGAGTTA
AANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNGTCAATCGTTTAATCATATTTCTTTTATTGAATTTAAAA
TAGAAAAACATCTTTTGAATGAACACCTGGCTTTCAAAAGAGAAGAAAGG
AAATCTATCAACCTGTTATAAGGCATTTCTCCTTATCGCTCCTTTTATTT
ACTTGATTTTTTTCTCTCGCGCCAGATTTAATTCGAGACCCGTGTATTAA
AGTGTGATATGAAATCCGATCCTCAAATCACATCTTTAAAAAGACATATT
TCATATGACACATTTAATAATCCTGCATAACTTCCTGTTTTTATAGACTG
TTCAAACGCGTGGTGCGGCCATCATAAAAGCGAGAAAATTATCAAGTGCC
ATGTCCGCTGCGAAAGCCATTTGTGACCACATGCGCGTTTGGTGGTTCGG
AACCGCCGAAGGTGAATACATGAGCATGGGTGTTATCACTGACGGCACAC
ATTACGGAATCCCTGAAGATATCGTTTATTCTTTCCCACTGACGATCGGT
GCGGGCCACAAATACACAATCGTCGATGGTTTAGAAATCAATGCCTTCTC
TCGGCAAAAGATGGATCTCTCAGCTAAGGAATTAGTGGAGGAAAGAGATG
TCGCGTTAGCGTTCTTGAAAAAGGAATGAGTTAAAAATGGTAATATGTAT
AGTTCGGTGGACTTTGTAGTAAACTTCTTTTTAGAAAAAATGAAATCTTT
GTCTGCGTAAATTTTTTTGTATTTAGAATTCTTAATGTTGCTCGTTTTTA
ATACAAATTGACGGTTGTAAAATGCATGCTAAGTTTATGAGATGTACAAT
GAATATTAAAGTACTAATAACATAATATCTTCTAATCAAGTTTTGATGGT
TAGGTGGTATTACTTACTAACACTGTTTAAATTTCGTTTACTATAAAATT
TGAATTTTATTTATCTAACGTTATGCATTTTACACCATTGGAATCTTTTT
AGTTTTGTAAAGTCTTTATTTTTAAAATACCTCTGATTAAAAAAATGTGC
ATAAATAAAATGCTGATACAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032340XLOC_032340Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00051015-exon-scaffold_192-1575043694:54459..54560TCONS_00051015-exon-scaffold_192-1575043694:54459..54560Clytia hemisphaericaexon
TCONS_00051015-exon-scaffold_192-1575043694:51307..51411TCONS_00051015-exon-scaffold_192-1575043694:51307..51411Clytia hemisphaericaexon
TCONS_00051015-exon-scaffold_192-1575043694:51030..51126TCONS_00051015-exon-scaffold_192-1575043694:51030..51126Clytia hemisphaericaexon
TCONS_00051015-exon-scaffold_192-1575043694:50630..50805TCONS_00051015-exon-scaffold_192-1575043694:50630..50805Clytia hemisphaericaexon
TCONS_00051015-exon-scaffold_192-1575043694:50202..50324TCONS_00051015-exon-scaffold_192-1575043694:50202..50324Clytia hemisphaericaexon
TCONS_00051015-exon-scaffold_192-1575043694:49799..49975TCONS_00051015-exon-scaffold_192-1575043694:49799..49975Clytia hemisphaericaexon
TCONS_00051015-exon-scaffold_192-1575043694:45588..46314TCONS_00051015-exon-scaffold_192-1575043694:45588..46314Clytia hemisphaericaexon
TCONS_00051015-exon-scaffold_192-1510915933:54459..54560TCONS_00051015-exon-scaffold_192-1510915933:54459..54560Clytia hemisphaericaexon
TCONS_00051015-exon-scaffold_192-1510915933:51307..51411TCONS_00051015-exon-scaffold_192-1510915933:51307..51411Clytia hemisphaericaexon
TCONS_00051015-exon-scaffold_192-1510915933:51030..51126TCONS_00051015-exon-scaffold_192-1510915933:51030..51126Clytia hemisphaericaexon
TCONS_00051015-exon-scaffold_192-1510915933:50630..50805TCONS_00051015-exon-scaffold_192-1510915933:50630..50805Clytia hemisphaericaexon
TCONS_00051015-exon-scaffold_192-1510915933:50202..50324TCONS_00051015-exon-scaffold_192-1510915933:50202..50324Clytia hemisphaericaexon
TCONS_00051015-exon-scaffold_192-1510915933:49799..49975TCONS_00051015-exon-scaffold_192-1510915933:49799..49975Clytia hemisphaericaexon
TCONS_00051015-exon-scaffold_192-1510915933:45588..46314TCONS_00051015-exon-scaffold_192-1510915933:45588..46314Clytia hemisphaericaexon
TCONS_00051015-exon-scaffold_192-1491911889:54459..54560TCONS_00051015-exon-scaffold_192-1491911889:54459..54560Clytia hemisphaericaexon
TCONS_00051015-exon-scaffold_192-1491911889:51307..51411TCONS_00051015-exon-scaffold_192-1491911889:51307..51411Clytia hemisphaericaexon
TCONS_00051015-exon-scaffold_192-1491911889:51030..51126TCONS_00051015-exon-scaffold_192-1491911889:51030..51126Clytia hemisphaericaexon
TCONS_00051015-exon-scaffold_192-1491911889:50630..50805TCONS_00051015-exon-scaffold_192-1491911889:50630..50805Clytia hemisphaericaexon
TCONS_00051015-exon-scaffold_192-1491911889:50202..50324TCONS_00051015-exon-scaffold_192-1491911889:50202..50324Clytia hemisphaericaexon
TCONS_00051015-exon-scaffold_192-1491911889:49799..49975TCONS_00051015-exon-scaffold_192-1491911889:49799..49975Clytia hemisphaericaexon
TCONS_00051015-exon-scaffold_192-1491911889:45588..46314TCONS_00051015-exon-scaffold_192-1491911889:45588..46314Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_192supercontigscaffold_192:45588..54560 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.252721	0.386025	0.0214076	1.79203	4.13338e-05	0.00013134	0.000277833	2.28362e-06	0.0644009	0.274039	1.95549	0.421781	0.225078	1.13374	0.0321178	0.0206832	0.288393	0.523555	11.7015	0.00691336	0.0619617	0.0796637	0.0388605	0.045404	5.60226e-07	1.28903e-07	0.00325787	0.0191985	0.00352304	0.023466
Blast
[Close]
BLAST of TCONS_00051015 vs. Swiss-Prot (Human)
Match: MDHC (Malate dehydrogenase, cytoplasmic OS=Homo sapiens GN=MDH1 PE=1 SV=4)

HSP 1 Score: 492.656 bits (1267), Expect = 3.903e-172
Identity = 230/331 (69.49%), Postives = 277/331 (83.69%), Query Frame = 1 
Query:  109 TEPLRVCVTGAAGQIAYSLLYSIGNGDVFGKSQPITLLLLDIPPMMPVLEGVVMELQDCSLPLLHEVVGTADPNVSFNNVDAAILVGAMPRREGMERKDLLKANAKIFEDQGKALDQYAKKTVKILVVGNPANTNCLIASKCAPSIPKENFSCLTKLDQNRAISQVAMRLGIKTCDVSKVIIWGNHSSTQYPDVQHGFVNLNGQAVPITEAVKDDNWIQGEFLRTVQTRGAAIIKARKLSSAMSAAKAICDHMRVWWFGTAEGEYMSMGVITDGTHYGIPEDIVYSFPLTIGAGHKYTIVDGLEINAFSRQKMDLSAKELVEERDVALAFL 1101
            +EP+RV VTGAAGQIAYSLLYSIGNG VFGK QPI L+LLDI PMM VL+GV+MELQDC+LPLL +V+ T   +V+F ++D AILVG+MPRREGMERKDLLKAN KIF+ QG ALD+YAKK+VK++VVGNPANTNCL ASK APSIPKENFSCLT+LD NRA +Q+A++LG+   DV  VIIWGNHSSTQYPDV H  V L G+ V + EA+KDD+W++GEF+ TVQ RGAA+IKARKLSSAMSAAKAICDH+R  WFGT EGE++SMGVI+DG  YG+P+D++YSFP+ I     +  V+GL IN FSR+KMDL+AKEL EE++ A  FL
Sbjct:    2 SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTANDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFVTTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVI-KNKTWKFVEGLPINDFSREKMDLTAKELTEEKESAFEFL 331
The following BLAST results are available for this feature:
BLAST of TCONS_00051015 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MDHC3.903e-17269.49Malate dehydrogenase, cytoplasmic OS=Homo sapiens ... [more]
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