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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050690 ID=TCONS_00050690|Name=TCONS_00050690|organism=Clytia hemisphaerica|type=transcript|length=2375bp
aatcttttttttctaaaaatagaaaacttAATGAAGAAAACTTTCTCAAA
CCTTATTGATACCTATCCAAACAAATCATTTTGCCTGATCTTCTAATCCT
ATATCGTTTCTCTCTAGGAAATCATAGCCCCACCCATTCATTGTGACTGA
TCAAATGTTTCGCTCCGGAGTAATCAAAAAACTCAACGCAAGCAAAGACA
TTACGGTTGGAGAAAGAACCAGTTTGTTTGCCGGCCTATGGGACGAATGT
ATCAAATATCAGATGTGAGTTTACATAAATTTTAAGAACAGAGTGAACAG
AAACCATTTTCtatcttttgaaaaacattgaatGACTTGCTtatattata
caaaaatctCCTGACAGAAAATCGACTCACGCAGAAACTTGCGGAAAATT
TAAGCACGTGCTAAGAAAGCTGaagttttgaatattttattttcttaaga
aTTAACCACTAAAATATAACTATACTGCTCGGCATGGCAAATGTTTTTTC
CGTACATggacgggagtatcatcgacggtcgggagtatctcatctttgtt
gtttggaattgcttaggtcatgGTTGCTAGTAACAGCCATGGTCTCTGTG
TCGGGTGCATACTGGAatccttgggccccgcagggttgctagtaacaaTA
TTTTTGATGCTTATATGTTGCTATTTTTAGGTATCCAGATCACGAAAAGT
ATTCAGACATGATCAAAGCTGTATTTATTCGCTGGCCGAAGTTGGTTGTT
GGGGAGCGGGATCATGccacgatattttggacaaatCGATTGAAAGCTTA
CGTCAAGCGCGAGCGAAGCAGAATGGATGATAATCCGGAAGTCATCGAAA
AGCGCCAAAAATTTGGCAAACGAAAAGCAAGCGAAGACCAGTCAGTTGAA
ATgctaaaaaatccaaaaaactttgGGGATTGATCTTCCCAACAGCCCTG
CTGGAGAAGATCAGCATTCGCTTCAAAAACACATTGAATCGTTGAAATCG
CAAAGTTTACTGCCGCAAGCCGCAAGAAACGCAGAACTAATTGAGACTCG
TTTAGATCTAACATTACACGATCGACGTGCGAAACTTATCAATAATGATA
TAACTGTAAAAAATCTGATCGACATTTACCCAATCCTTGCGAATGGTGAA
CAGGTAAGCATAATTCGGCTAATTATTGAATCGAAGGGGGGGAGGGCAAC
TAGGCAGAATTGGGTACGGAGACGTGCCACTGGTCAGGGTCCTTTGTTTA
GGCTCTGaaaatatctgacagggtcccaaattaaCTAactttcaagatgt
gtatctgacagggttgcATTTAgctaattttggacatttttcagggtgga
aatcagaaaattattcaatttttgtctacttttagtcatttttgccactt
gggtgaaaatgggaaaattttgcaatttttcgttctgataGGGTcccaat
tttacaaaaattatatctgacagggtccacttctCAAACTTAGTGAATAA
CAGTTAAATTCCATTGCCTGCGAAATCGAGCTGAAGTATTAGGTTGGGTA
CACATTTTACTAATGCGTTTACttattttcatttcagattTTGTTAGAGT
TCCAACGCTTGGCTGGCTTTAAATTGATCGGTAGGCTGGAGGAATCTATG
CCCGATTACGCACGTGCTATCATCCACTTCTCAAAATCTGACATGGCGGT
GGCAATCAGCAATGcttcaacaaaaaaagaaaaagactgtAAGTTGCACA
TCAGTGCTTGCCATTTAAGGTTGAGACATTTCACTGGGCGGTATCCGTCG
TCGCaaacatcaaaagccctttggatagtATAGTAGGGTTTAAGAATGGT
CAATCAAATTTAGACATTTGTATTAagaaacaggggggggggctgcCTAC
AGTCCGGCAGTTGGCAGAAAATCGAAAAGTTAATATCCGGCGTTTAGGAT
CCTTGGAACATAATTGAAAGTAAGAATATAATGAATATGAACAAAAGCTT
AAAAATATAACTTTGTTTTTCAACAGATCGATATGCTGTTGTTGGAGTAA
TGACCTTACCGACATTGTTTCGAGAAGATCCAAAACACTACTACGGAATT
GATAACACCCTAACTCCTCGAATCAGTCATGCTAACCCTGACATTTTCGA
CGAACAAGAATTTTTCATCCACCTCGATGGCATCACTATTGGAAAGTCGA
GAGATCCTTTGACGGCACTGACATTGATGTACAGTTGCTACTACGTGTTC
AACTTAGTATACCCAAAGGAGTTGCAAAGTTCCTTGGAATTTATCCAGCG
TTTCTTGGTAAAAATCGGAGATGGTAGCAAGCCATCAGGCAAACTAATTA
CAGCAAtcacaaaaataagaaaata Run BLAST on NCBI transcript from alignment at scaffold_183:17079..19453+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050690 ID=TCONS_00050690|Name=TCONS_00050690|organism=Clytia hemisphaerica|type=transcript|length=2375bp|location=Sequence derived from alignment at scaffold_183:17079..19453+ (Clytia hemisphaerica)
aatcttttttttctaaaaatagaaaacttAATGAAGAAAACTTTCTCAAA
CCTTATTGATACCTATCCAAACAAATCATTTTGCCTGATCTTCTAATCCT
ATATCGTTTCTCTCTAGGAAATCATAGCCCCACCCATTCATTGTGACTGA
TCAAATGTTTCGCTCCGGAGTAATCAAAAAACTCAACGCAAGCAAAGACA
TTACGGTTGGAGAAAGAACCAGTTTGTTTGCCGGCCTATGGGACGAATGT
ATCAAATATCAGATGTGAGTTTACATAAATTTTAAGAACAGAGTGAACAG
AAACCATTTTCtatcttttgaaaaacattgaatGACTTGCTtatattata
caaaaatctCCTGACAGAAAATCGACTCACGCAGAAACTTGCGGAAAATT
TAAGCACGTGCTAAGAAAGCTGaagttttgaatattttattttcttaaga
aTTAACCACTAAAATATAACTATACTGCTCGGCATGGCAAATGTTTTTTC
CGTACATggacgggagtatcatcgacggtcgggagtatctcatctttgtt
gtttggaattgcttaggtcatgGTTGCTAGTAACAGCCATGGTCTCTGTG
TCGGGTGCATACTGGAatccttgggccccgcagggttgctagtaacaaTA
TTTTTGATGCTTATATGTTGCTATTTTTAGGTATCCAGATCACGAAAAGT
ATTCAGACATGATCAAAGCTGTATTTATTCGCTGGCCGAAGTTGGTTGTT
GGGGAGCGGGATCATGccacgatattttggacaaatCGATTGAAAGCTTA
CGTCAAGCGCGAGCGAAGCAGAATGGATGATAATCCGGAAGTCATCGAAA
AGCGCCAAAAATTTGGCAAACGAAAAGCAAGCGAAGACCAGTCAGTTGAA
ATgctaaaaaatccaaaaaactttgGGGATTGATCTTCCCAACAGCCCTG
CTGGAGAAGATCAGCATTCGCTTCAAAAACACATTGAATCGTTGAAATCG
CAAAGTTTACTGCCGCAAGCCGCAAGAAACGCAGAACTAATTGAGACTCG
TTTAGATCTAACATTACACGATCGACGTGCGAAACTTATCAATAATGATA
TAACTGTAAAAAATCTGATCGACATTTACCCAATCCTTGCGAATGGTGAA
CAGGTAAGCATAATTCGGCTAATTATTGAATCGAAGGGGGGGAGGGCAAC
TAGGCAGAATTGGGTACGGAGACGTGCCACTGGTCAGGGTCCTTTGTTTA
GGCTCTGaaaatatctgacagggtcccaaattaaCTAactttcaagatgt
gtatctgacagggttgcATTTAgctaattttggacatttttcagggtgga
aatcagaaaattattcaatttttgtctacttttagtcatttttgccactt
gggtgaaaatgggaaaattttgcaatttttcgttctgataGGGTcccaat
tttacaaaaattatatctgacagggtccacttctCAAACTTAGTGAATAA
CAGTTAAATTCCATTGCCTGCGAAATCGAGCTGAAGTATTAGGTTGGGTA
CACATTTTACTAATGCGTTTACttattttcatttcagattTTGTTAGAGT
TCCAACGCTTGGCTGGCTTTAAATTGATCGGTAGGCTGGAGGAATCTATG
CCCGATTACGCACGTGCTATCATCCACTTCTCAAAATCTGACATGGCGGT
GGCAATCAGCAATGcttcaacaaaaaaagaaaaagactgtAAGTTGCACA
TCAGTGCTTGCCATTTAAGGTTGAGACATTTCACTGGGCGGTATCCGTCG
TCGCaaacatcaaaagccctttggatagtATAGTAGGGTTTAAGAATGGT
CAATCAAATTTAGACATTTGTATTAagaaacaggggggggggctgcCTAC
AGTCCGGCAGTTGGCAGAAAATCGAAAAGTTAATATCCGGCGTTTAGGAT
CCTTGGAACATAATTGAAAGTAAGAATATAATGAATATGAACAAAAGCTT
AAAAATATAACTTTGTTTTTCAACAGATCGATATGCTGTTGTTGGAGTAA
TGACCTTACCGACATTGTTTCGAGAAGATCCAAAACACTACTACGGAATT
GATAACACCCTAACTCCTCGAATCAGTCATGCTAACCCTGACATTTTCGA
CGAACAAGAATTTTTCATCCACCTCGATGGCATCACTATTGGAAAGTCGA
GAGATCCTTTGACGGCACTGACATTGATGTACAGTTGCTACTACGTGTTC
AACTTAGTATACCCAAAGGAGTTGCAAAGTTCCTTGGAATTTATCCAGCG
TTTCTTGGTAAAAATCGGAGATGGTAGCAAGCCATCAGGCAAACTAATTA
CAGCAAtcacaaaaataagaaaata
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050690-exon-scaffold_183-1491911889:17079..19453 | TCONS_00050690-exon-scaffold_183-1491911889:17079..19453 | Clytia hemisphaerica | exon |
| TCONS_00050690-exon-scaffold_183-1510915933:17079..19453 | TCONS_00050690-exon-scaffold_183-1510915933:17079..19453 | Clytia hemisphaerica | exon |
| TCONS_00050690-exon-scaffold_183-1575043694:17079..19453 | TCONS_00050690-exon-scaffold_183-1575043694:17079..19453 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_183 | supercontig | scaffold_183:17079..19453 + |
Blast
The following BLAST results are available for this feature:
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