TCONS_00050689 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050689
Unique NameTCONS_00050689
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2685

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050689 ID=TCONS_00050689|Name=TCONS_00050689|organism=Clytia hemisphaerica|type=transcript|length=2685bp
CTCGACTATTGAGATGGATCAATTATGCTTTACTTGTGATATTGTATTGA
CATCTTTTCTAGAGATTTAGAAGTTCCAGtctattattttcttttctaag
AATAAGGCATTCGGCATTGTCTATATGGAAACCCTGGACTTTCCATGATG
ACTGACGAAGTTGTGTAAGAAACGTAAGGATGGAATATATTCAAACTGAA
TATATTTGAATATATTCAAACTCACGAACAATTTAATtgattgagaaaaa
aacaaagtcGTAAAGAAAAACATTGGTTCAATGAAGAATATTCTTGGTTC
TCCTTTACGGTTGAAAAGATGGATGGTATTCATGGTATGTACCATTGTAA
TTTATTCTGACATTACAATGCTTTTAAAACATGCGAAATATAAGATGGCG
GACGGAGATGCGCATATTCAAAATGGCGAACCAGAAGAAGAAAACACTGA
ATTTAATATCTCTACACTATTTAagaacatcaaagaaaaccaaAAGGAAC
CATCAACTACCTTTATTGTACACATAGAAGAGATATTACAATCTACCAAG
AGAAGTCATCACCAACGAACTAATTCAACTTCAAAACTCAGCTCTTGGtc
gtaagtgacgtaaaatcagacaatacgtcacttgcaaccaatcagctgtt
aggTCCATGAAAGACATTGTAATGTGCATACCAtgaataatatttgaaaa
aatattgccAAACCATTTAATCCATTTCAAATGTTAACTGCATCACAAAC
CATGGCTGCTGCTTCATTGGGAACTATCCCAATCAAGAGTCCATCACTGT
CATCATTATCTCCAAAGGAAGTTAATCTTCCTCCTACTTCAATGTTGCCA
ACTTTGCGAACACTGTTTACACATAGACGTAGATCGTTACACACCACAAG
GACTCATGGGAAGGAATTGATAAATGTATTGGAAAATATACCACATAATA
ACAATACTAacaaacaaacgattttcttttTGGCTGATGGGTTCGGAGTA
ATCAAGCAAGCTCAAAGAATGTGGGAACGAAAAGAAAGCGATCTCGTGGA
TTTATGGAGTTTATGGAAACCTTTGACTTTTCATGATGATGAGAAGTTGT
GCAAGAAATGTAAGGTCAATTTTTAATCTattgaaaattattataaaGTT
ATTAGTTATTTAATCTATTAATATTAGAACTCTTTCAGCaacaacaaaga
tgaaaaactcGTGATGGTTGAGAATTTGATTCATAAAATTAACAATACCA
AGTACCAAAAATGCCATTAAAGGACAAAAAGCACAATTGAttgaaaaGAA
ATCATAGCCCCACCCATTCATTGTGACTGATCAAATGTTTCGCTCCGGAG
TAATCAAAAAACTCAACGCAAGCAAAGACATTACGGTTGGAGAAAGAACC
AGTTTGTTTGCCGGCCTATGGGACGAATGTATCAAATATCAGATGTATCC
AGATCACGAAAAGTATTCAGACATGATCAAAGCTGTATTTATTCGCTGGC
CGAAGTTGGTTGTTGGGGAGCGGGATCATGccacgatattttggacaaat
CGATTGAAAGCTTACGTCAAGCGCGAGCGAAGCAGAATGGATGATAATCC
GGAAGTCATCGAAAAGCGCCAAAAATTTGGCAAACGAAAAGCAAGCGAAG
ACCAGTCAGTTGAAATgctaaaaaatccaaaaaactttgGGGATTGATCT
TCCCAACAGCCCTGCTGGAGAAGATCAGCATTCGCTTCAAAAACACATTG
AATCGTTGAAATCGCAAAGTTTACTGCCGCAAGCCGCAAGAAACGCAGAA
CTAATTGAGACTCGTTTAGATCTAACATTACACGATCGACGTGCGAAACT
TATCAATAATGATATAACTGTAAAAAATCTGATCGACATTTACCCAATCC
TTGCGAATGGTGAACAGattTTGTTAGAGTTCCAACGCTTGGCTGGCTTT
AAATTGATCGGTAGGCTGGAGGAATCTATGCCCGATTACGCACGTGCTAT
CATCCACTTCTCAAAATCTGACATGGCGGTGGCAATCAGCAATGcttcaa
caaaaaaagaaaaagactATCGATATGCTGTTGTTGGAGTAATGACCTTA
CCGACATTGTTTCGAGAAGATCCAAAACACTACTACGGAATTGATAACAC
CCTAACTCCTCGAATCAGTCATGCTAACCCTGACATTTTCGACGAACAAG
AATTTTTCATCCACCTCGATGGCATCACTATTGGAAAGTCGAGAGATCCT
TTGACGGCACTGACATTGATGTACAGTTGCTACTACGTGTTCAACTTAGT
ATACCCAAAGGAGTTGCAAAGTTCCTTGGAATTTATCCAGCGTTTCTTGG
TAAAAATCGGAGATGGTAGCAAGCCATCAGGCAAACTAATTACAGCAAtc
acaaaaataagaaaatatgcTGGTTGAAGTTCAACCACTGtatcttttta
tctttgtgacaTTAGCAGTGATCAGTTTTGGCGATGGCTTGCTTTCGTCG
CCGGTTTTAACCACGAAACTCAAATGAATAAATGAGTCCGTGCAGacatt
ttgatatttgaaaatttacaaagTTACGCTTCAACTTCTTTTCTTTGAgt
ttgaatattgaatattgaaAGCACTATATTTTCTTGTCAATGTTTTTTTG
CCAAATGAAAATTAGAAAGGCTAAAACTGCACTCC
Run BLAST on NCBI

protein sequence of TCONS_00050689-protein

>TCONS_00050689-protein ID=TCONS_00050689-protein|Name=TCONS_00050689-protein|organism=Clytia hemisphaerica|type=polypeptide|length=149bp
MPDYARAIIHFSKSDMAVAISNASTKKEKDYRYAVVGVMTLPTLFREDPK
HYYGIDNTLTPRISHANPDIFDEQEFFIHLDGITIGKSRDPLTALTLMYS
CYYVFNLVYPKELQSSLEFIQRFLVKIGDGSKPSGKLITAITKIRKYAG
Run BLAST on NCBI

transcript from alignment at scaffold_183:15718..19721+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050689 ID=TCONS_00050689|Name=TCONS_00050689|organism=Clytia hemisphaerica|type=transcript|length=4004bp|location=Sequence derived from alignment at scaffold_183:15718..19721+ (Clytia hemisphaerica)
CTCGACTATTGAGATGGATCAATTATGCTTTACTTGTGATATTGTATTGA
CATCTTTTCTAGAGATTTAGAAGTTCCAGtctattattttcttttctaag
AATAAGGCATTCGGCATTGTCTATATGGAAACCCTGGACTTTCCATGATG
ACTGACGAAGTTGTGTAAGAAACGTAAGGATGGAATATATTCAAACTGAA
TATATTTGAATATATTCAAACTCACGAACAATTTAATtgattgagaaaaa
aacaaagtcGTAAAGAAAAACATTGGTTCAATGAAGAATATTCTTGGTTC
TCCTTTACGGTTGAAAAGATGGATGGTATTCATGGTATGTACCATTGTAA
TTTATTCTGACATTACAATGCTTTTAAAACATGCGAAATATAAGATGGCG
GACGGAGATGCGCATATTCAAAATGGCGAACCAGAAGAAGAAAACACTGA
ATTTAATATCTCTACACTATTTAagaacatcaaagaaaaccaaAAGGAAC
CATCAACTACCTTTATTGTACACATAGAAGAGATATTACAATCTACCAAG
AGAAGTCATCACCAACGAACTAATTCAACTTCAAAACTCAGCTCTTGGtc
gtaagtgacgtaaaatcagacaatacgtcacttgcaaccaatcagctgtt
aggTCCATGAAAGACATTGTAATGTGCATACCAtgaataatatttgaaaa
aatattgccAAACCATTTAATCCATTTCAAATGTTAACTGCATCACAAAC
CATGGCTGCTGCTTCATTGGGAACTATCCCAATCAAGAGTCCATCACTGT
CATCATTATCTCCAAAGGAAGTTAATCTTCCTCCTACTTCAATGTTGCCA
ACTTTGCGAACACTGTTTACACATAGACGTAGATCGTTACACACCACAAG
GACTCATGGGAAGGAATTGATAAATGTATTGGAAAATATACCACATAATA
ACAATACTAacaaacaaacgattttcttttTGGCTGATGGGTTCGGAGTA
ATCAAGCAAGCTCAAAGAATGTGGGAACGAAAAGAAAGCGATCTCGTGGA
TTTATGGAGTTTATGGAAACCTTTGACTTTTCATGATGATGAGAAGTTGT
GCAAGAAATGTAAGGTCAATTTTTAATCTattgaaaattattataaaGTT
ATTAGTTATTTAATCTATTAATATTAGAACTCTTTCAGCaacaacaaaga
tgaaaaactcGTGATGGTTGAGAATTTGATTCATAAAATTAACAATACCA
AGTACCAAAAATGCCATTAAAGGACAAAAAGCACAATTGAttgaaaagta
agaaaaagtaTTTGAAGACTATTTTAACCtcaattttcgcaaattttaaa
atacttcttaaaatcttttttttctaaaaatagaaaacttAATGAAGAAA
ACTTTCTCAAACCTTATTGATACCTATCCAAACAAATCATTTTGCCTGAT
CTTCTAATCCTATATCGTTTCTCTCTAGGAAATCATAGCCCCACCCATTC
ATTGTGACTGATCAAATGTTTCGCTCCGGAGTAATCAAAAAACTCAACGC
AAGCAAAGACATTACGGTTGGAGAAAGAACCAGTTTGTTTGCCGGCCTAT
GGGACGAATGTATCAAATATCAGATGTGAGTTTACATAAATTTTAAGAAC
AGAGTGAACAGAAACCATTTTCtatcttttgaaaaacattgaatGACTTG
CTtatattatacaaaaatctCCTGACAGAAAATCGACTCACGCAGAAACT
TGCGGAAAATTTAAGCACGTGCTAAGAAAGCTGaagttttgaatatttta
ttttcttaagaaTTAACCACTAAAATATAACTATACTGCTCGGCATGGCA
AATGTTTTTTCCGTACATggacgggagtatcatcgacggtcgggagtatc
tcatctttgttgtttggaattgcttaggtcatgGTTGCTAGTAACAGCCA
TGGTCTCTGTGTCGGGTGCATACTGGAatccttgggccccgcagggttgc
tagtaacaaTATTTTTGATGCTTATATGTTGCTATTTTTAGGTATCCAGA
TCACGAAAAGTATTCAGACATGATCAAAGCTGTATTTATTCGCTGGCCGA
AGTTGGTTGTTGGGGAGCGGGATCATGccacgatattttggacaaatCGA
TTGAAAGCTTACGTCAAGCGCGAGCGAAGCAGAATGGATGATAATCCGGA
AGTCATCGAAAAGCGCCAAAAATTTGGCAAACGAAAAGCAAGCGAAGACC
AGTCAGTTGAAATgctaaaaaatccaaaaaactttgGGGATTGATCTTCC
CAACAGCCCTGCTGGAGAAGATCAGCATTCGCTTCAAAAACACATTGAAT
CGTTGAAATCGCAAAGTTTACTGCCGCAAGCCGCAAGAAACGCAGAACTA
ATTGAGACTCGTTTAGATCTAACATTACACGATCGACGTGCGAAACTTAT
CAATAATGATATAACTGTAAAAAATCTGATCGACATTTACCCAATCCTTG
CGAATGGTGAACAGGTAAGCATAATTCGGCTAATTATTGAATCGAAGGGG
GGGAGGGCAACTAGGCAGAATTGGGTACGGAGACGTGCCACTGGTCAGGG
TCCTTTGTTTAGGCTCTGaaaatatctgacagggtcccaaattaaCTAac
tttcaagatgtgtatctgacagggttgcATTTAgctaattttggacattt
ttcagggtggaaatcagaaaattattcaatttttgtctacttttagtcat
ttttgccacttgggtgaaaatgggaaaattttgcaatttttcgttctgat
aGGGTcccaattttacaaaaattatatctgacagggtccacttctCAAAC
TTAGTGAATAACAGTTAAATTCCATTGCCTGCGAAATCGAGCTGAAGTAT
TAGGTTGGGTACACATTTTACTAATGCGTTTACttattttcatttcagat
tTTGTTAGAGTTCCAACGCTTGGCTGGCTTTAAATTGATCGGTAGGCTGG
AGGAATCTATGCCCGATTACGCACGTGCTATCATCCACTTCTCAAAATCT
GACATGGCGGTGGCAATCAGCAATGcttcaacaaaaaaagaaaaagactg
tAAGTTGCACATCAGTGCTTGCCATTTAAGGTTGAGACATTTCACTGGGC
GGTATCCGTCGTCGCaaacatcaaaagccctttggatagtATAGTAGGGT
TTAAGAATGGTCAATCAAATTTAGACATTTGTATTAagaaacaggggggg
gggctgcCTACAGTCCGGCAGTTGGCAGAAAATCGAAAAGTTAATATCCG
GCGTTTAGGATCCTTGGAACATAATTGAAAGTAAGAATATAATGAATATG
AACAAAAGCTTAAAAATATAACTTTGTTTTTCAACAGATCGATATGCTGT
TGTTGGAGTAATGACCTTACCGACATTGTTTCGAGAAGATCCAAAACACT
ACTACGGAATTGATAACACCCTAACTCCTCGAATCAGTCATGCTAACCCT
GACATTTTCGACGAACAAGAATTTTTCATCCACCTCGATGGCATCACTAT
TGGAAAGTCGAGAGATCCTTTGACGGCACTGACATTGATGTACAGTTGCT
ACTACGTGTTCAACTTAGTATACCCAAAGGAGTTGCAAAGTTCCTTGGAA
TTTATCCAGCGTTTCTTGGTAAAAATCGGAGATGGTAGCAAGCCATCAGG
CAAACTAATTACAGCAAtcacaaaaataagaaaatatgcTGGTTGAAGTT
CAACCACTGtatctttttatctttgtgacaTTAGCAGTGATCAGTTTTGG
CGATGGCTTGCTTTCGTCGCCGGTTTTAACCACGAAACTCAAATGAATAA
ATGAGTCCGTGCAGacattttgatatttgaaaatttacaaagTTACGCTT
CAACTTCTTTTCTTTGAgtttgaatattgaatattgaaAGCACTATATTT
TCTTGTCAATGTTTTTTTGCCAAATGAAAATTAGAAAGGCTAAAACTGCA
CTCC

Coding sequence (CDS) from alignment at scaffold_183:15718..19721+

>TCONS_00050689 ID=TCONS_00050689|Name=TCONS_00050689|organism=Clytia hemisphaerica|type=CDS|length=900bp|location=Sequence derived from alignment at scaffold_183:15718..19721+ (Clytia hemisphaerica)
ATGCCCGATTACGCACGTGCTATCATCCACTTCTCAAAATCTGACATGGC
GGTGGCAATCAGCAATGcttcaacaaaaaaagaaaaagactATCGATATG
CTGTTGTTGGAGTAATGACCTTACCGACATTGTTTCGAGAAGATCCAAAA
CACTACTACGGAATTGATAACACCCTAACTCCTCGAATCAGTCATGCTAA
CCCTGACATTTTCGACGAACAAGAATTTTTCATCCACCTCGATGGCATCA
CTATTGGAAAGTCGAGAGATCCTTTGACGGCACTGACATTGATGTACAGT
TGCTACTACGTGTTCAACTTAGTATACCCAAAGGAGTTGCAAAGTTCCTT
GGAATTTATCCAGCGTTTCTTGGTAAAAATCGGAGATGGTAGCAAGCCAT
CAGGCAAACTAATTACAGCAAtcacaaaaataagaaaatatgcTGGTTGA
ATGCCCGATTACGCACGTGCTATCATCCACTTCTCAAAATCTGACATGGC
GGTGGCAATCAGCAATGcttcaacaaaaaaagaaaaagactATCGATATG
CTGTTGTTGGAGTAATGACCTTACCGACATTGTTTCGAGAAGATCCAAAA
CACTACTACGGAATTGATAACACCCTAACTCCTCGAATCAGTCATGCTAA
CCCTGACATTTTCGACGAACAAGAATTTTTCATCCACCTCGATGGCATCA
CTATTGGAAAGTCGAGAGATCCTTTGACGGCACTGACATTGATGTACAGT
TGCTACTACGTGTTCAACTTAGTATACCCAAAGGAGTTGCAAAGTTCCTT
GGAATTTATCCAGCGTTTCTTGGTAAAAATCGGAGATGGTAGCAAGCCAT
CAGGCAAACTAATTACAGCAAtcacaaaaataagaaaatatgcTGGTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032118XLOC_032118Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050689-proteinTCONS_00050689-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050689-exon-scaffold_183-1491911889:15718..17014TCONS_00050689-exon-scaffold_183-1491911889:15718..17014Clytia hemisphaericaexon
TCONS_00050689-exon-scaffold_183-1510915933:15718..17014TCONS_00050689-exon-scaffold_183-1510915933:15718..17014Clytia hemisphaericaexon
TCONS_00050689-exon-scaffold_183-1575043694:15718..17014TCONS_00050689-exon-scaffold_183-1575043694:15718..17014Clytia hemisphaericaexon
TCONS_00050689-exon-scaffold_183-1491911889:17196..17342TCONS_00050689-exon-scaffold_183-1491911889:17196..17342Clytia hemisphaericaexon
TCONS_00050689-exon-scaffold_183-1510915933:17196..17342TCONS_00050689-exon-scaffold_183-1510915933:17196..17342Clytia hemisphaericaexon
TCONS_00050689-exon-scaffold_183-1575043694:17196..17342TCONS_00050689-exon-scaffold_183-1575043694:17196..17342Clytia hemisphaericaexon
TCONS_00050689-exon-scaffold_183-1491911889:17759..18231TCONS_00050689-exon-scaffold_183-1491911889:17759..18231Clytia hemisphaericaexon
TCONS_00050689-exon-scaffold_183-1510915933:17759..18231TCONS_00050689-exon-scaffold_183-1510915933:17759..18231Clytia hemisphaericaexon
TCONS_00050689-exon-scaffold_183-1575043694:17759..18231TCONS_00050689-exon-scaffold_183-1575043694:17759..18231Clytia hemisphaericaexon
TCONS_00050689-exon-scaffold_183-1491911889:18666..18816TCONS_00050689-exon-scaffold_183-1491911889:18666..18816Clytia hemisphaericaexon
TCONS_00050689-exon-scaffold_183-1510915933:18666..18816TCONS_00050689-exon-scaffold_183-1510915933:18666..18816Clytia hemisphaericaexon
TCONS_00050689-exon-scaffold_183-1575043694:18666..18816TCONS_00050689-exon-scaffold_183-1575043694:18666..18816Clytia hemisphaericaexon
TCONS_00050689-exon-scaffold_183-1491911889:19105..19721TCONS_00050689-exon-scaffold_183-1491911889:19105..19721Clytia hemisphaericaexon
TCONS_00050689-exon-scaffold_183-1510915933:19105..19721TCONS_00050689-exon-scaffold_183-1510915933:19105..19721Clytia hemisphaericaexon
TCONS_00050689-exon-scaffold_183-1575043694:19105..19721TCONS_00050689-exon-scaffold_183-1575043694:19105..19721Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_183supercontigscaffold_183:15718..19721 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.110453	0.138097	0.179176	0.14401	0.946165	0.773218	1.04863	1.20722	0.380539	0.96522	0.356503	0.54559	0.361172	0.391344	0.0856849	0.107739	0.200662	0.129381	0.10801	0.12601	0.192333	0.187797	0.0647482	0.150549	0.263087	0.366298	0.0982371	0.101599	0.0392504	0.158942
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050689 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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