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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050487 ID=TCONS_00050487|Name=TCONS_00050487|organism=Clytia hemisphaerica|type=transcript|length=1453bp
acagtgAAAATCACGAATTATGGACATCCTATCACTCAACGTCAAGGCTC
CATACACACGACCGACAGAATCTGCAGTCATTTTCAACAATCTTACAAAC
TTAATACCAAATATAAACGATAACGTcaaacgatttttgaaaaaccaaTC
CGGAAAATTACCTGTCCGGCGTCACTCATCTGCGGAACTAAAATTTTCCG
ATGAAGTTCCGTTAATTGAAGTTACACCCCCTTCGCCTGGATGCTCACGG
AAAACTACTTTCGATATCGAATTCAATAAAGTTATATTAGATACTCTTGA
CGTATGTAAGAGAAAAATCAGACGGTTTTCTGAACCATGTCTTTCAAGCC
AACTCAATCTCGCTCATTTAGAACAACACGCGGAAAAATCTCGCCGTAGA
TCAATGCCGTGTATATCAAGTAAACATTTATTGAAAGTTCCAAAACCGAC
CAAGAACAAGAAACATAAACGGAGATTGAGTTTGCCGATTAAACCGAGTC
AATCCGAGTTACCCGCCGATTTTTGTCCGTTAGAAAAAAGTTTGTCCGGT
AGCTATGAGAGGATACATTATCAACTAAGTCATGACGGTGGTCCGCCCAA
AACTGTTCACGAGATATTCATACCGGGTTTCGGAATTAACAGAGATGGCT
CAGATCCGGATATGGAGGATAACGGAACGACGGAGAAACATCGGAATAAT
AAGTCTGAACATCTCACAAATTTGGAAACCGGAAACATGGTGTCAAAGAA
TGGCAATCGAAAATCGGTAAAGGTTTGTCATCCCGATTTATCACAGACAA
TTCCAGAAGAAAATTTGGTATTTGCTGGTGATAAATatacaaaacatcaa
aataccTATCATTCAAAAAATCGGAATAtcaaatcggaaaatcgggatgC
TAAATCAGCAAATCGGAATTCGAAATCGGGAAATTCATCACCTGAACCGC
AGGTCACGTCTTGTTCTGATTTGTTAATTGTAGCTAATAGAGATCTTAAC
AAGTTGTCTAAGAGACAAAATAGCGGCACAAACTCTACTATAAAGGAACT
AAACTTCATTCACGATTCACTTCTTAATAACATTAATGGGCTTATAAATG
ACGACATCGTGTTGAAAGGAcatatcattaataaaaaatCTACAACAAGT
CCAAATTTGTCTCGCCCAGTCCGTCCATTTAAACAGGAAAACAAGAGTAT
AGATTTGGTTGATGGAGGCATAAACGGAATGTCTTTATGTGAGAATAGAC
GCTCTTTGTCTCGATCATCACAAACATTGGAGAAGGAAAGGGAAACTATG
GATTTGGATAACAGAGCCACAACTCAAAATAAGAGGTTAGTGAACTCTAT
AGAACAGTAtgacatcatgaataatgaatTGAACTCTTTCTTGTGAGAAC
AATATttcataagaacacgaggcttaaTTTCggtcaaaacctaagaacaa
tta Run BLAST on NCBI transcript from alignment at scaffold_173:44510..45962 Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050487 ID=TCONS_00050487|Name=TCONS_00050487|organism=Clytia hemisphaerica|type=transcript|length=1453bp|location=Sequence derived from alignment at scaffold_173:44510..45962 (Clytia hemisphaerica)
taattgttcttaggttttgaccGAAAttaagcctcgtgttcttatgaaAT
ATTGTTCTCACAAGAAAGAGTTCAattcattattcatgatgtcaTACTGT
TCTATAGAGTTCACTAACCTCTTATTTTGAGTTGTGGCTCTGTTATCCAA
ATCCATAGTTTCCCTTTCCTTCTCCAATGTTTGTGATGATCGAGACAAAG
AGCGTCTATTCTCACATAAAGACATTCCGTTTATGCCTCCATCAACCAAA
TCTATACTCTTGTTTTCCTGTTTAAATGGACGGACTGGGCGAGACAAATT
TGGACTTGTTGTAGattttttattaatgatatgTCCTTTCAACACGATGT
CGTCATTTATAAGCCCATTAATGTTATTAAGAAGTGAATCGTGAATGAAG
TTTAGTTCCTTTATAGTAGAGTTTGTGCCGCTATTTTGTCTCTTAGACAA
CTTGTTAAGATCTCTATTAGCTACAATTAACAAATCAGAACAAGACGTGA
CCTGCGGTTCAGGTGATGAATTTCCCGATTTCGAATTCCGATTTGCTGAT
TTAGcatcccgattttccgatttgaTATTCCGATTTTTTGAATGATAggt
attttgatgttttgtatATTTATCACCAGCAAATACCAAATTTTCTTCTG
GAATTGTCTGTGATAAATCGGGATGACAAACCTTTACCGATTTTCGATTG
CCATTCTTTGACACCATGTTTCCGGTTTCCAAATTTGTGAGATGTTCAGA
CTTATTATTCCGATGTTTCTCCGTCGTTCCGTTATCCTCCATATCCGGAT
CTGAGCCATCTCTGTTAATTCCGAAACCCGGTATGAATATCTCGTGAACA
GTTTTGGGCGGACCACCGTCATGACTTAGTTGATAATGTATCCTCTCATA
GCTACCGGACAAACTTTTTTCTAACGGACAAAAATCGGCGGGTAACTCGG
ATTGACTCGGTTTAATCGGCAAACTCAATCTCCGTTTATGTTTCTTGTTC
TTGGTCGGTTTTGGAACTTTCAATAAATGTTTACTTGATATACACGGCAT
TGATCTACGGCGAGATTTTTCCGCGTGTTGTTCTAAATGAGCGAGATTGA
GTTGGCTTGAAAGACATGGTTCAGAAAACCGTCTGATTTTTCTCTTACAT
ACGTCAAGAGTATCTAATATAACTTTATTGAATTCGATATCGAAAGTAGT
TTTCCGTGAGCATCCAGGCGAAGGGGGTGTAACTTCAATTAACGGAACTT
CATCGGAAAATTTTAGTTCCGCAGATGAGTGACGCCGGACAGGTAATTTT
CCGGAttggtttttcaaaaatcgtttgACGTTATCGTTTATATTTGGTAT
TAAGTTTGTAAGATTGTTGAAAATGACTGCAGATTCTGTCGGTCGTGTGT
ATGGAGCCTTGACGTTGAGTGATAGGATGTCCATAATTCGTGATTTTcac
tgt
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050487-exon-scaffold_173-1491911889:44510..45962 | TCONS_00050487-exon-scaffold_173-1491911889:44510..45962 | Clytia hemisphaerica | exon |
| TCONS_00050487-exon-scaffold_173-1510915933:44510..45962 | TCONS_00050487-exon-scaffold_173-1510915933:44510..45962 | Clytia hemisphaerica | exon |
| TCONS_00050487-exon-scaffold_173-1575043694:44510..45962 | TCONS_00050487-exon-scaffold_173-1575043694:44510..45962 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_173 | supercontig | scaffold_173:44510..45962 . |
Blast
The following BLAST results are available for this feature:
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