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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050447 ID=TCONS_00050447|Name=TCONS_00050447|organism=Clytia hemisphaerica|type=transcript|length=520bp
ctttttcagagcAATGCGGGTCGGTTATTTTAGCCAGCATCACGTGGACG
CTTTATCTTTAAAACAAACAAGTTTAGAATTCTTCAAAAAACGATTCCCA
GGAAAATTGGACGTTGAATACAGAAGTCATCTCGGAAAATATGGTGTGAC
GGGTGACCTTGCAATGCGACCTATATCGAGTTTATCCGGAGGTCAAAAAA
GTCGAGTTGCTTTCGCCTTAATGACATGGCATGAACCAAACTTCTTCATT
CTTGATGAACCTACCAATCATCTGGATATCGAAACGGTGGAAGCCCTCGG
AAAAGCACTACAGAAATTCAATGGCGGAGTCATCCTAGTATCTCACAACG
AACAACTCATACAAATGATCGCGCAAGAGACTTGGTTGTGCGGAGAAAAG
ACTGTCAAACGAATCGATGGAGGTTTCCAAGCCTACAAAAAGACTTTAGA
GGAAGAGTTTAAACGGATTAATGCAATATGAAAATGTTGAGGAAAGtagg
agagagagagagagagagag Run BLAST on NCBI protein sequence of TCONS_00050447-protein >TCONS_00050447-protein ID=TCONS_00050447-protein|Name=TCONS_00050447-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
FFRAMRVGYFSQHHVDALSLKQTSLEFFKKRFPGKLDVEYRSHLGKYGVT
GDLAMRPISSLSGGQKSRVAFALMTWHEPNFFILDEPTNHLDIETVEALG
KALQKFNGGVILVSHNEQLIQMIAQETWLCGEKTVKRIDGGFQAYKKTLE
EEFKRINAI Run BLAST on NCBI transcript from alignment at scaffold_172:11917..13706+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050447 ID=TCONS_00050447|Name=TCONS_00050447|organism=Clytia hemisphaerica|type=transcript|length=1790bp|location=Sequence derived from alignment at scaffold_172:11917..13706+ (Clytia hemisphaerica)
ctttttcagagcAATGCGGGTCGGTTATTTTAGCCAGCATCACGTGGACG
CTTTATCTTTAAAACAAACAAGTTTAGAATTCTTCAAAAAACGATTCCCA
GGTATACATAAAGAATCCAGCAGTTTGATATAATTTCAGGAGAGTTCTAT
AATATTGTGTCACAAATCAGGGTTGCCACGTCTGCCGAAAATGTCTGGAA
ATAGTATACCTGTCTGGAAAAAGTCTGGAAATAGAGAAACATAATACTGT
TTTCGCTGTTTCACTGTTAACTTTATTATCTTTGTTAAAGACAACCTTAG
AATTTTGGtttttgcacgtttttttactTGTATAGACTTTGTCACTTACA
AAAAAGTCCGGAAAATATTGGTATTTATACCTAAAGTCTGGAAAAATTTG
gcgattttaagcaaaaatatctggaaaaaattgagatttttgggcaaaag
tctggaattttgaaagtttcctaCCCATGGCAACCCTGCAAATGGTGTCA
TCCATTGCATAAATCAATTTTGTGGAAATTTCGAAGGTTGCATGAAAACT
CATAATCATGCGATTGAATAATCCCTCATTTTAGACTTtcgttttttgtt
atttttggaaCAATATCTTGAAGTTTGAATAGTAAAATTGAGAGGGGCAA
CGGATGTACTAATTCTTCACTTAACTTATTTCAGGAAAATTGGACGTTGA
ATACAGAAGTCATCTCGGAAAATATGGTGTGACGGGTGACCTTGCAATGC
GACCTATATCGAGTTTATCCGGAGGTCAAAAAAGTCGAGTTGCTTTCGCC
TTAATGACATGGCATGAGTAAGTCCTATTGAGCTTCGACTCGGGAGTCTC
TAAATTACGATCAAAATAGCATGAATTCCtttaaattataaaattataaa
tcTTGTTAAAGTAATATGACCCCATAATCATTTTCAGCAATGATATTTCT
ATTCTTGAAACATTACCAAATGATATGTAAAGTAACGAGCTATATTTAGG
TTTTTTCACCTTATCACAATTTTTGCATGTACATTGAATCATATTTGATT
TAACACGTATTGATCTAATGAGATCTCAGTTAGTGGATACTATCTCCACT
TCTTACGTTTGAAAtcatattttctttgatttttcattCAGACCAAACTT
CTTCATTCTTGATGAACCTACCAATCATCTGGATATCGAAACGGTGGAAG
CCCTCGGAAAAGCACTACAGAAATTCAATGTAAGAACTTTTTTCTCTTAC
TCCATCATTGAACTTACTGCTGCTTAGGTTATATAGTCTTTTGCAAAATA
TGATGATACACCTTGCAAATCTACAATAATTCAGACTCCCGTCCCGAAAA
AAAATTGGGTGTAATAGCAGCTCATTTCAAAGAACAACATTGATTTAGGG
AAAGGGAGAAGCTTTTCTTTTTGATTGTAGATGTAAGAGGTTCAATCCCC
TTGAAAAATATAGGAATTGAGTTTCTCTTGAGAGATAGCACAAGAAATTA
ATTTTTCCTTTAAAAATACATGAAGTTCACACAGAAAAGCATAATAAAAA
TATTTCCTCTAAGTAAACTAATTTTTCCTCGTTTATTTATAGGGCGGAGT
CATCCTAGTATCTCACAACGAACAACTCATACAAATGATCGCGCAAGAGA
CTTGGTTGTGCGGAGAAAAGACTGTCAAACGAATCGATGGAGGTTTCCAA
GCCTACAAAAAGACTTTAGAGGAAGAGTTTAAACGGATTAATGCAATATG
AAAATGTTGAGGAAAGtaggagagagagagagagagagag Coding sequence (CDS) from alignment at scaffold_172:11917..13706+ >TCONS_00050447 ID=TCONS_00050447|Name=TCONS_00050447|organism=Clytia hemisphaerica|type=CDS|length=1920bp|location=Sequence derived from alignment at scaffold_172:11917..13706+ (Clytia hemisphaerica)
tttttcagagcAATGCGGGTCGGTTATTTTAGCCAGCATCACGTGGACGC
TTTATCTTTAAAACAAACAAGTTTAGAATTCTTCAAAAAACGATTCCCAG
GAAAATTGGACGTTGAATACAGAAGTCATCTCGGAAAATATGGTGTGACG
GGTGACCTTGCAATGCGACCTATATCGAGTTTATCCGGAGGTCAAAAAAG
TCGAGTTGCTTTCGCCTTAATGACATGGCATGAACCAAACTTCTTCATTC
TTGATGAACCTACCAATCATCTGGATATCGAAACGGTGGAAGCCCTCGGA
AAAGCACTACAGAAATTCAATGGCGGAGTCATCCTAGTATCTCACAACGA
ACAACTCATACAAATGATCGCGCAAGAGACTTGGTTGTGCGGAGAAAAGA
CTGTCAAACGAATCGATGGAGGTTTCCAAGCCTACAAAAAGACTTTAGAG
GAAGAGTTTAAACGGATTAATGCAATATGAtttttcagagcAATGCGGGT
CGGTTATTTTAGCCAGCATCACGTGGACGCTTTATCTTTAAAACAAACAA
GTTTAGAATTCTTCAAAAAACGATTCCCAGGAAAATTGGACGTTGAATAC
AGAAGTCATCTCGGAAAATATGGTGTGACGGGTGACCTTGCAATGCGACC
TATATCGAGTTTATCCGGAGGTCAAAAAAGTCGAGTTGCTTTCGCCTTAA
TGACATGGCATGAACCAAACTTCTTCATTCTTGATGAACCTACCAATCAT
CTGGATATCGAAACGGTGGAAGCCCTCGGAAAAGCACTACAGAAATTCAA
TGGCGGAGTCATCCTAGTATCTCACAACGAACAACTCATACAAATGATCG
CGCAAGAGACTTGGTTGTGCGGAGAAAAGACTGTCAAACGAATCGATGGA
GGTTTCCAAGCCTACAAAAAGACTTTAGAGGAAGAGTTTAAACGGATTAA
TGCAATATGAtttttcagagcAATGCGGGTCGGTTATTTTAGCCAGCATC
ACGTGGACGCTTTATCTTTAAAACAAACAAGTTTAGAATTCTTCAAAAAA
CGATTCCCAGGAAAATTGGACGTTGAATACAGAAGTCATCTCGGAAAATA
TGGTGTGACGGGTGACCTTGCAATGCGACCTATATCGAGTTTATCCGGAG
GTCAAAAAAGTCGAGTTGCTTTCGCCTTAATGACATGGCATGAACCAAAC
TTCTTCATTCTTGATGAACCTACCAATCATCTGGATATCGAAACGGTGGA
AGCCCTCGGAAAAGCACTACAGAAATTCAATGGCGGAGTCATCCTAGTAT
CTCACAACGAACAACTCATACAAATGATCGCGCAAGAGACTTGGTTGTGC
GGAGAAAAGACTGTCAAACGAATCGATGGAGGTTTCCAAGCCTACAAAAA
GACTTTAGAGGAAGAGTTTAAACGGATTAATGCAATATGAtttttcagag
cAATGCGGGTCGGTTATTTTAGCCAGCATCACGTGGACGCTTTATCTTTA
AAACAAACAAGTTTAGAATTCTTCAAAAAACGATTCCCAGGAAAATTGGA
CGTTGAATACAGAAGTCATCTCGGAAAATATGGTGTGACGGGTGACCTTG
CAATGCGACCTATATCGAGTTTATCCGGAGGTCAAAAAAGTCGAGTTGCT
TTCGCCTTAATGACATGGCATGAACCAAACTTCTTCATTCTTGATGAACC
TACCAATCATCTGGATATCGAAACGGTGGAAGCCCTCGGAAAAGCACTAC
AGAAATTCAATGGCGGAGTCATCCTAGTATCTCACAACGAACAACTCATA
CAAATGATCGCGCAAGAGACTTGGTTGTGCGGAGAAAAGACTGTCAAACG
AATCGATGGAGGTTTCCAAGCCTACAAAAAGACTTTAGAGGAAGAGTTTA
AACGGATTAATGCAATATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050447-exon-scaffold_172-1491911889:11917..12017 | TCONS_00050447-exon-scaffold_172-1491911889:11917..12017 | Clytia hemisphaerica | exon |
| TCONS_00050447-exon-scaffold_172-1510915933:11917..12017 | TCONS_00050447-exon-scaffold_172-1510915933:11917..12017 | Clytia hemisphaerica | exon |
| TCONS_00050447-exon-scaffold_172-1575043694:11917..12017 | TCONS_00050447-exon-scaffold_172-1575043694:11917..12017 | Clytia hemisphaerica | exon |
| TCONS_00050447-exon-scaffold_172-1491911889:12601..12733 | TCONS_00050447-exon-scaffold_172-1491911889:12601..12733 | Clytia hemisphaerica | exon |
| TCONS_00050447-exon-scaffold_172-1510915933:12601..12733 | TCONS_00050447-exon-scaffold_172-1510915933:12601..12733 | Clytia hemisphaerica | exon |
| TCONS_00050447-exon-scaffold_172-1575043694:12601..12733 | TCONS_00050447-exon-scaffold_172-1575043694:12601..12733 | Clytia hemisphaerica | exon |
| TCONS_00050447-exon-scaffold_172-1491911889:13058..13145 | TCONS_00050447-exon-scaffold_172-1491911889:13058..13145 | Clytia hemisphaerica | exon |
| TCONS_00050447-exon-scaffold_172-1510915933:13058..13145 | TCONS_00050447-exon-scaffold_172-1510915933:13058..13145 | Clytia hemisphaerica | exon |
| TCONS_00050447-exon-scaffold_172-1575043694:13058..13145 | TCONS_00050447-exon-scaffold_172-1575043694:13058..13145 | Clytia hemisphaerica | exon |
| TCONS_00050447-exon-scaffold_172-1491911889:13509..13706 | TCONS_00050447-exon-scaffold_172-1491911889:13509..13706 | Clytia hemisphaerica | exon |
| TCONS_00050447-exon-scaffold_172-1510915933:13509..13706 | TCONS_00050447-exon-scaffold_172-1510915933:13509..13706 | Clytia hemisphaerica | exon |
| TCONS_00050447-exon-scaffold_172-1575043694:13509..13706 | TCONS_00050447-exon-scaffold_172-1575043694:13509..13706 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_172 | supercontig | scaffold_172:11917..13706 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0016887 | ATPase activity |
| GO:0005524 | ATP binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0016887 |
ATPase activity |
| molecular_function |
GO:0005524 |
ATP binding |
Blast
BLAST of TCONS_00050447 vs. Swiss-Prot (Human)
Match: ABCF3 (ATP-binding cassette sub-family F member 3 OS=Homo sapiens GN=ABCF3 PE=1 SV=2) HSP 1 Score: 206.453 bits (524), Expect = 3.196e-62 Identity = 88/153 (57.52%), Postives = 122/153 (79.74%), Query Frame = 2
Query: 8 RAMRVGYFSQHHVDALSLKQTSLEFFKKRFPGKLDVEYRSHLGKYGVTGDLAMRPISSLSGGQKSRVAFALMTWHEPNFFILDEPTNHLDIETVEALGKALQKFNGGVILVSHNEQLIQMIAQETWLCGEKTVKRIDGGFQAYKKTLEEEFKR 466
R +++GYFSQHHV+ L L +++E ++FPG+ + EYR LG+YG++G+LAMRP++SLSGGQKSRVAFA MT PNF+ILDEPTNHLD+ET+EALG+AL F GGVILVSH+E+ I+++ +E W+C V R++GGF Y+ L+E+F+R
Sbjct: 553 RNLKIGYFSQHHVEQLDLNVSAVELLARKFPGRPEEEYRHQLGRYGISGELAMRPLASLSGGQKSRVAFAQMTMPCPNFYILDEPTNHLDMETIEALGRALNNFRGGVILVSHDERFIRLVCRELWVCEGGGVTRVEGGFDQYRALLQEQFRR 705
The following BLAST results are available for this feature:
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