TCONS_00050237 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050237
Unique NameTCONS_00050237
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1734

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050237 ID=TCONS_00050237|Name=TCONS_00050237|organism=Clytia hemisphaerica|type=transcript|length=1734bp
GTTTTTTTGACAGactatttttatttgatttggttatATGAAATTATAGG
GAAATTATGATCAGAATATCTTTATTGATTAGAATGTCAATCCATTTCCA
CAAATGAAGAAGATGAATTCGAAGAAACTTATTTTGAACAGTGTGACGAC
ATAAATGACAGTCATGATACCGATGACGAAAAAGAAGATCTATCAAAGGC
ACTGGAGGAAGTAAAAACTATGGTAGGCGAAAGACCAAAGCGGACTTGGG
GAATGAGGGCAGAGAGAAACGATCAAAGATGGAGAGAATCAAAAGAAGGT
TTGTTAGAAGAGACGATCAGGAGAGAAGAGCAAGAgacattttgttttaa
atgtggTCAAAGAGAGGCTGAAATTCGATGTTATTCGTGTACTCATGCAA
TATTTCTTTGTACTGTTTGTGACACTGAAGTGCATAAATCCAAATCTTTT
CATGATCGCCAATGgtttaaggaattttataaaCCTCTCACCCCAAAAGA
ACATATTGAAGATGGTCAAGTTGTCATCATTGAAAAACCATTGCTTCTTA
CAAGTAAATGTTCTTTCTGTGGCCACTTTTGCGAAAGTTGTGACGTACAA
GTCTTGTCAACCGCACCCATTACAGTTATCACAACCAAAGGACGCTTTGA
TTTGAACAAATTTGAGCGAATTTGTTGTCATTGTACAGAGAAATCCAATC
CCTTTCAAATACGAACGTTATTAAAGAATGGATATTGGCCTGTATCGCTG
AACTACGCTTTAACAGTCATTCGCGAAGATTGCTTTTTACTTTGGGATCG
CTTTTCAAAGAACATGCCTGGATCTTCTCTTggaagttttttgaaatctt
tatctGACATCTCCATACATAATGGCAggGTTGGAACAATAAACCAACCG
ATGTTTGCTCACGCTTTCAAAGAGTACCAACATTTGAAATTTGATGTCGA
ACAGTTGTGTTCACTGTCTTGGTTTGAATGTCCTGGCTGTGGTGATCAGC
AGCATTCTTGCCACGTGGATGGAAATAATAAATTGTATCGATACAAAACG
TCTGGAAAacgTACTGCCAAACCTTATTATGGTGACATTTTTATTGTTAA
GAACGAAAAGGTCAATGATCATTTGGCAAAGCTGAATTACAGTGTCCGTC
AACCGAAAaattctGAACCTGTCAATTGCGGAGGCAATATATTAAAAGCT
GCTCAGAATGTGTCCAGGAAAAAGGCGTCTCTGGATGAAACGGGGTTAGA
GTATTGTGTGTGTCGACATGGTATTGCACAGAGCGGTGTCAATATGTTTA
GGGGAGAAATCTTCGGCTATGCTCATTACTTGCAAAAAGATCACATGGTG
TCTAAAAACGTTAAGTTTATATGGTATGATGTCATTTGCAAGTACTGGTC
ATGGTTGAAGTCAAACGACCCGTTCTTAGCTGAAGAAATGAAACCTGCCC
TGTCAGTCTTACATGGAAAAATGCACCAGATGTCTTGTCAGATTGGCTTT
GGTGGTAGATGGACCAAGGGTGCTGCATTAACTACAGGAGAAGAAACTGA
GCAAGTTAACAGCTACTTGTCAAGACTCACCAACACAACAAAATACATGC
TTCCTCAAAACCGCGAGGATACTATCACTGAATTTGCCATGGAGTGGAAT
CAAAGAAAGGTGAAAAGATCATCCAAAAGTTTGATGAAAAAGTATACAAA
GGTAGAAAAAGAGCTGAAGAAACTTAAAAGCAAG
Run BLAST on NCBI

transcript from alignment at scaffold_168:7772..11200-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050237 ID=TCONS_00050237|Name=TCONS_00050237|organism=Clytia hemisphaerica|type=transcript|length=3429bp|location=Sequence derived from alignment at scaffold_168:7772..11200- (Clytia hemisphaerica)
GTTTTTTTGACAGACTATTTTTATTTGATTTGGTTATATGAAATTATAGG
GAAATTATGATCAGAATATCTTTATTGATTAGAATGTCAATCCATTTCCA
CAAATGAAGAAGATGAATTCGAAGAAACTTATTTTGAACAGTGTGACGAC
ATAAATGACAGTCATGATACCGATGACGAAAAAGAAGGTAAGCGCTGTTA
TGCCAAATTTGTATTTTAAAACAACTAGCAGAATTATGAGTAAATGAACT
AAAAATAACTTTGTTGCAGATCTATCAAAGGCACTGGAGGAAGTAAAAAC
TATGGTAGGCGAAAGACCAAAGCGGACTTGGGGAATGAGGGCAGAGAGAA
ACGATCAAAGATGGAGAGAATCAAAAGAAGGTTTGTTAGAAGAGACGATC
AGGAGAGAAGAGCAAGAGACATTTTGTTTTAAATGTGGTCAAAGAGAGGC
TGAAATTCGATGTTATTCGTGTACTCATGCAATATTTCTTTGTACTGTTT
GTGACACTGAAGTGCATAAATCCAAATCTTTTCATGATCGCCAATGGTTT
AAGGAATTTTATAAACCTCTCACCCCAAAAGAACATATTGAAGATGGTCA
AGTTGTCATCATTGGTAAGAAAGATTTAACAGTTATAAGTTATCATAACC
AATCTTTTTCCATTTTTAAAGAATTTAGGTTTTTTATTAGTGACTCAACT
TAAGTTTTTAGCTGTTTGTGTTGGGGCCGTAGTTAGAGTAAAATTTATTC
TATGAAAGAATATTTTGGTATTATTTTACTATTTTATTATGTTTGGATAT
TTAGAAAAACCATTGCTTCTTACAAGTAAATGTTCTTTCTGTGGCCACTT
TTGCGAAAGTTGTGACGTACAAGTCTTGTCAACCGCACCCATTACAGTTA
TCACAACCAAAGGTAGCTATATTTTTCAGTAGGAGTTGTTAAGAAATTAA
AACCCTGATGAACATATTGTGTCCTTTTACTTTCCGTTATTTATATGTTA
AATGCGGTTGTATGGAATATTCCATTAAGTTGTTATGACCGACCATTCTT
ATCTCTCTTTGTAGGACGCTTTGATTTGAACAAATTTGAGCGAATTTGTT
GTCATTGTACAGAGAAATCCAATCCCTTTCAAATACGAACGTTATTAAAG
AATGGATATTGGCCTGTATCGCTGAACTACGCTTTAACAGTCATTCGCGA
AGATTGCTTTTTACTTTGGGATCGCTTTTCAAAGAACATGCCTGGATCTT
CTCTTGGAAGTTTTTTGAAATCTTTATCTGACATCTCCATACATAATGGC
AGGGTTTGTTTTTCTTATATAATTTTTATTTATTTAGTTTAACTTTTGGA
TCAAGAGTTGAACTTTAATTGTTGAAGTCATAACGTTAGCCACCCCTAGT
ATATATGTATATAAATTTTTAAGGTGAGGGTGGGGGCTGGCTATTTTTTT
CTGTAGCATTTAGAAATTTTCCATTGTTGTTTCACACTGCTCCATATTGT
TTACTTTCATATCAGAATTACTAAATATTTGGAGGCTAATAAAAAACCTC
AGATATTTGGGGGGGGGGCCTGAATCTTTTTTAGGGGACCTGATTTTTTT
GCCTGGGGCCTAAACCCTATGGAAGTTCAATAAAGCTTCAGTTTGACTCA
TTTGTATTTTAATAGTTCCGGGATTTTCCTATTAGGTTGGAACAATAAAC
CAACCGATGTTTGCTCACGCTTTCAAAGAGTACCAACATTTGAAATTTGA
TGTCGAACAGTTGTGTTCACTGTCTTGGTTTGAATGTCCTGGCTGTGGTG
ATCAGCAGCATTCTTGCCACGTGGATGGAAATAATAAATTGTATCGATAC
AAAACGTCTGGAAAGTCAGTATTAATTTCTTTTAAAGGTCGATCTTTAAA
AAATTTTAAAGAATAATATCTCAGACAGCTGTCTTGTCTTTGTTTATGTT
TATCTTATGATTGTCTTTTTAGTTATATCTAGTTATTATGTGAATAATCT
ATATTCGATTTTCTGATTAAAGATAGTGGCAAATCTATGCAATAACTATA
TTTTTCTTATTTTCATTTTTTAGACGTACTGCCAAACCTTATTATGGTGA
CATTTTTATTGTTAAGAACGAAAAGGTCAATGATCATTTGGCAAAGCTGA
ATTACAGTGTCCGTCAACCGAAAGTATGTATCATTTTCTTTTATTCTCTA
CGTATTAGTTTACTTGTTGAGAAGATATGAAACCTTTTTCTGTTTTGAAA
GAAAAATGTTTATTGCTTGTTCTTTTTCAACAATACAATCAAAAATGAAT
TAGCAACAATTGCGAAATAATAAATCATAAGAAAAATATTCCTTGGATGC
TGTTTGTATTTAATTTTTAGAATTCTGAACCTGTCAATTGCGGAGGCAAT
ATATTAAAAGCTGCTCAGAATGTGTCCAGGAAAAAGGCGTCTCTGGATGA
AACGGGGTTAGAGTATTGTGTGTGTCGACATGGTATTGCACAGAGCGGTG
TCAATATGTTTAGGGGAGAAATCTTCGGCTATGCTCATTACTTGCAAAAA
GATCACATGGTGTCTAAAAACGTTAAGTTTATATGGTATGATGTCATTTG
CAAGTACTGGTCATGGTTGAAGTCAAACGACCCGTTCTTAGCTGAAGAAA
TGAAACCTGCCCTGTCAGTCTTACATGGAAAAATGCACCAGATGTCTTGT
CAGGTTGTCTTAAATTTTTACGTCTAATGTTCCTTTTTACATTTAACACT
CACTGATTCTTTTTCTTCTTAACATTTTTCGCACTTTTCAAAGCTTTTAA
TGTAACATCAATGATAACAGAATTTNGTCTTGTCAGGTTGTCTTAAATTT
TTACGTCTAATGTTCCTTTTTACATTTAACACTGATTCGTTTTCTTCTTA
ACATTTTTCGCACTTTTCAAAGCTTTTAATGTAACATCGATGATAACAGA
ATTCGTAACTTTTAAAATGTGGTGTTAACGGTTTTTTCATGTATCTCGAT
AGATTGGCTTTGGTGGTAGATGGACCAAGGGTGCTGCATTAACTACAGGA
GAAGAAACTGAGCAAGTTAACAGCTACTTGTCAAGACTCACCAACACAAC
AAAATACATGCTTCCTCAAAGTAAATTTCATAGACTAAAATTGGTACATT
GATTGGTATACAAATTTATAACAGATTATAAAAGTGAATAAATGCATTTG
AAATCTCTTTACCATAGACCGCGAGGATACTATCACTGAATTTGCCATGG
AGTGGAATCAAAGAAAGGTGAAAAGATCATCCAAAAGTTTGATGAAAAAG
TATACAAAGGTAATTTAGTTTGAAGGATTGATTCTCTGTGGAAGGTTTCT
CATTTCTTCTTTTTCTTTTGCCACTTTTCTGTATAAAATTTTACAGGTAG
AAAAAGAGCTGAAGAAACTTAAAAGCAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031823XLOC_031823Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050237-exon-scaffold_168-1575043694:11014..11200TCONS_00050237-exon-scaffold_168-1575043694:11014..11200Clytia hemisphaericaexon
TCONS_00050237-exon-scaffold_168-1575043694:10587..10931TCONS_00050237-exon-scaffold_168-1575043694:10587..10931Clytia hemisphaericaexon
TCONS_00050237-exon-scaffold_168-1575043694:10289..10396TCONS_00050237-exon-scaffold_168-1575043694:10289..10396Clytia hemisphaericaexon
TCONS_00050237-exon-scaffold_168-1575043694:9898..10136TCONS_00050237-exon-scaffold_168-1575043694:9898..10136Clytia hemisphaericaexon
TCONS_00050237-exon-scaffold_168-1575043694:9337..9515TCONS_00050237-exon-scaffold_168-1575043694:9337..9515Clytia hemisphaericaexon
TCONS_00050237-exon-scaffold_168-1575043694:9028..9127TCONS_00050237-exon-scaffold_168-1575043694:9028..9127Clytia hemisphaericaexon
TCONS_00050237-exon-scaffold_168-1575043694:8498..8830TCONS_00050237-exon-scaffold_168-1575043694:8498..8830Clytia hemisphaericaexon
TCONS_00050237-exon-scaffold_168-1575043694:8081..8198TCONS_00050237-exon-scaffold_168-1575043694:8081..8198Clytia hemisphaericaexon
TCONS_00050237-exon-scaffold_168-1575043694:7892..7983TCONS_00050237-exon-scaffold_168-1575043694:7892..7983Clytia hemisphaericaexon
TCONS_00050237-exon-scaffold_168-1575043694:7772..7804TCONS_00050237-exon-scaffold_168-1575043694:7772..7804Clytia hemisphaericaexon
TCONS_00050237-exon-scaffold_168-1510915933:11014..11200TCONS_00050237-exon-scaffold_168-1510915933:11014..11200Clytia hemisphaericaexon
TCONS_00050237-exon-scaffold_168-1510915933:10587..10931TCONS_00050237-exon-scaffold_168-1510915933:10587..10931Clytia hemisphaericaexon
TCONS_00050237-exon-scaffold_168-1510915933:10289..10396TCONS_00050237-exon-scaffold_168-1510915933:10289..10396Clytia hemisphaericaexon
TCONS_00050237-exon-scaffold_168-1510915933:9898..10136TCONS_00050237-exon-scaffold_168-1510915933:9898..10136Clytia hemisphaericaexon
TCONS_00050237-exon-scaffold_168-1510915933:9337..9515TCONS_00050237-exon-scaffold_168-1510915933:9337..9515Clytia hemisphaericaexon
TCONS_00050237-exon-scaffold_168-1510915933:9028..9127TCONS_00050237-exon-scaffold_168-1510915933:9028..9127Clytia hemisphaericaexon
TCONS_00050237-exon-scaffold_168-1510915933:8498..8830TCONS_00050237-exon-scaffold_168-1510915933:8498..8830Clytia hemisphaericaexon
TCONS_00050237-exon-scaffold_168-1510915933:8081..8198TCONS_00050237-exon-scaffold_168-1510915933:8081..8198Clytia hemisphaericaexon
TCONS_00050237-exon-scaffold_168-1510915933:7892..7983TCONS_00050237-exon-scaffold_168-1510915933:7892..7983Clytia hemisphaericaexon
TCONS_00050237-exon-scaffold_168-1510915933:7772..7804TCONS_00050237-exon-scaffold_168-1510915933:7772..7804Clytia hemisphaericaexon
TCONS_00050237-exon-scaffold_168-1491911889:11014..11200TCONS_00050237-exon-scaffold_168-1491911889:11014..11200Clytia hemisphaericaexon
TCONS_00050237-exon-scaffold_168-1491911889:10587..10931TCONS_00050237-exon-scaffold_168-1491911889:10587..10931Clytia hemisphaericaexon
TCONS_00050237-exon-scaffold_168-1491911889:10289..10396TCONS_00050237-exon-scaffold_168-1491911889:10289..10396Clytia hemisphaericaexon
TCONS_00050237-exon-scaffold_168-1491911889:9898..10136TCONS_00050237-exon-scaffold_168-1491911889:9898..10136Clytia hemisphaericaexon
TCONS_00050237-exon-scaffold_168-1491911889:9337..9515TCONS_00050237-exon-scaffold_168-1491911889:9337..9515Clytia hemisphaericaexon
TCONS_00050237-exon-scaffold_168-1491911889:9028..9127TCONS_00050237-exon-scaffold_168-1491911889:9028..9127Clytia hemisphaericaexon
TCONS_00050237-exon-scaffold_168-1491911889:8498..8830TCONS_00050237-exon-scaffold_168-1491911889:8498..8830Clytia hemisphaericaexon
TCONS_00050237-exon-scaffold_168-1491911889:8081..8198TCONS_00050237-exon-scaffold_168-1491911889:8081..8198Clytia hemisphaericaexon
TCONS_00050237-exon-scaffold_168-1491911889:7892..7983TCONS_00050237-exon-scaffold_168-1491911889:7892..7983Clytia hemisphaericaexon
TCONS_00050237-exon-scaffold_168-1491911889:7772..7804TCONS_00050237-exon-scaffold_168-1491911889:7772..7804Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_168supercontigscaffold_168:7772..11200 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.777671	0	0	0	1.84705	1.5521	1.93771	3.51661	1.24447	3.64486	6.4478	2.32698	4.56129	3.8319	2.78079	2.60576	3.98665	1.51853	3.7264	3.27841	3.79589	3.55719	1.34897	0.4917	3.81469	4.8154	4.45058	2.79114	2.37869	3.03458
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050237 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top