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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049884 ID=TCONS_00049884|Name=TCONS_00049884|organism=Clytia hemisphaerica|type=transcript|length=1671bp CATGACTATCACATACTAAGCAAGGACAGACTAAACTTGTGGTTTGAATT TGTAAACTGTAGAGAGCTCGTTTGGAAGAAAAGTCAAATCAATATAATGG ACCAAAATTCAGGATCCCGGTATGTGGAAAGTTCTCTGATGACATTGATC GAAGATGAAGACGATAATAAGTGGCATGAACAGCAATTAAGTCGTAAAAT GGTCATTAAAACGAAAACAGAAGAATACATTAACACTTTCACCTTCCATG GTCTTACCAGAGTGTTCAAAGGTGAACGGATCGAATCTGTATTTTGGTTA TTTATGATATTAGGTGGTGTGTCATTATCGGGAGTTGTCGTTAATCGCCT AGTTACCAGAtatcaaaaacatgaaatttacaCGGAGATTCAAACTAAAA TCACAGATGAAAACTTCTTCCCAAGTGTGACATTTTGTGAGAATCAGCTA TTAATTGATAGCTATTTTTCATATTGTGGCGTTGCACCGAGACATGGACA TGAAAATCATCACAAAGTTTGTGACTACATAATGAAAGAACCGGAAGAAT CCATCGAGGAATCTCGAAATAAATTCTGGTATAACGGTCTATTTAACATT ACAAAATGCGAAACATGGGGAGGCAAGAAATGCGCCAGTAGTGATTATTT CAAGACTCTAAACCATTTCAACCATTCATGTATCACTTGGAATTATGCAG GTAATTTGAGTGATGTCTATAGCCATGTTGATATTGAGTTTGATGTTAAG CCACTATCTTGGCTTGGTAAAAACGAAGGTATACGAGAACATTTACGAGA AGGTATATTTGCACTGCCACATGACCATAGAATATACGAAATTGACATAG TGAACAAATTAGACATTGAACCGTATAAAACATATGAAATCAAATTAGAC ACAACCGTTATAAAAAGACTACCACACCCTTTCCCCTCTAAGTGCGCAAG TAGTAAGGGTGATGAcatttttcctggaaaataCACGCGAAGATCATGCA TTGAATCACACAACTATATCGAAATGTACAAAAAATGTGGGGACACTTTG GATTACGTACGCCAATTTATTCCACCTGATATTAAGAAACAATACAAAGG GAATAAAACTATTAGAGAAGCAGAAAAGTGTGTTTGGTTATTTGGGAAAG GAGAAacacaaaaaactaaaaactgtAATCTTCCTTGCCAAGAACTGCAA TTGGCGATAACGACTTCATCTAGCGAACGCAAAAAGGACAAATCACGAAC CAAGTACCGTATAAGTTTGCAACATCAACTGATTGATGCTTATAAGGTTA TGGAAGAGAAAGAGCTATATCCTTGGGACCAAATGGCATGTGAAATTGGA GGTCTTATCGGGTTGGCTATTGGTGCATCCATAATTTCTTTGGTAGAGGT TATAGTGTACGCATTTTTGGTGATTGTTAATAAAGTGATCTGAGGAAAAT TAGCCGCTAACAAAGGCATTTAACTAATATGAACAAAACGATATAGCAAA AACGACCTTTTGGAAGGAAAATAGGAGCTgaagaaatttccaaattctTT TGGAAAAGTCCTGCGTCATAAATTGatactagccgtcccggcgtcgtccg agacgacttcttactccttttaatacgctcgcttcgctcgcttttctatt tttcagaaacttgtagggaTT Run BLAST on NCBI transcript from alignment at scaffold_167:357882..359997+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049884 ID=TCONS_00049884|Name=TCONS_00049884|organism=Clytia hemisphaerica|type=transcript|length=2116bp|location=Sequence derived from alignment at scaffold_167:357882..359997+ (Clytia hemisphaerica) CATGACTATCACATACTAAGCAAGGACAGACTAAACTTGTGGTTTGAATT
TGTAAACTGTAGAGAGCTCGTTTGGAAGAAAAGTCAAATCAATATAATGG
ACCAAAATTCAGGTAAGCTTTTTAATAACATACGAAATACTAATGTATAT
TCTTTTGAAATCAACGAGGAAGGGATTAAATAAGCTCTAAGATAGTAAGT
GCGGAGCTGTCATTATAAGCTGTCATAGGCACACAAGTTTCCGACTGCAT
TCAAGGGCGATACGAAGactcccttttctctagctgtctactCGAAGATA
GGGCAATGAGCAACTCCTTTCCcaggatttctccacttacccttgatctg
tctctttaattgctgagcatcaagtaaAGAGGCattaagtaccattttgg
gaatcttccAGTATGACCTTGGATGGGGGTCGAACCACCCACAACTTGCG
CACCGAAACTGGAAGCTCTATCTTCAATCTGGCAGTCAAAGCTGGCATAC
AGAGTTATAATAGTATATATAATAAATGTaaattgtaataaaatatttct
tatctAGGATCCCGGTATGTGGAAAGTTCTCTGATGACATTGATCGAAGA
TGAAGACGATAATAAGTGGCATGAACAGCAATTAAGTCGTAAAATGGTCA
TTAAAACGAAAACAGAAGAATACATTAACACTTTCACCTTCCATGGTCTT
ACCAGAGTGTTCAAAGGTGAACGGATCGAATCTGTATTTTGGTTATTTAT
GATATTAGGTGGTGTGTCATTATCGGGAGTTGTCGTTAATCGCCTAGTTA
CCAGAtatcaaaaacatgaaatttacaCGGAGATTCAAACTAAAATCACA
GATGAAAACTTCTTCCCAAGTGTGACATTTTGTGAGAATCAGCTATTAAT
TGATAGCTATTTTTCATATTGTGGCGTTGCACCGAGACATGGACATGAAA
ATCATCACAAAGTTTGTGACTACATAATGAAAGAACCGGAAGAATCCATC
GAGGAATCTCGAAATAAATTCTGGTATAACGGTCTATTTAACATTACAAA
ATGCGAAACATGGGGAGGCAAGAAATGCGCCAGTAGTGATTATTTCAAGA
CTCTAAACCATTTCAACCATTCATGTATCACTTGGAATTATGCAGGTAAT
TTGAGTGATGTCTATAGCCATGTTGATATTGAGTTTGATGTTAAGCCACT
ATCTTGGCTTGGTAAAAACGAAGGTATACGAGAACATTTACGAGAAGGTA
TATTTGCACTGCCACATGACCATAGAATATACGAAATTGACATAGTGAAC
AAATTAGACATTGAACCGTATAAAACATATGAAATCAAATTAGACACAAC
CGTTATAAAAAGACTACCACACCCTTTCCCCTCTAAGTGCGCAAGTAGTA
AGGGTGATGAcatttttcctggaaaataCACGCGAAGATCATGCATTGAA
TCACACAACTATATCGAAATGTACAAAAAATGTGGGGACACTTTGGATTA
CGTACGCCAATTTATTCCACCTGATATTAAGAAACAATACAAAGGGAATA
AAACTATTAGAGAAGCAGAAAAGTGTGTTTGGTTATTTGGGAAAGGAGAA
acacaaaaaactaaaaactgtAATCTTCCTTGCCAAGAACTGCAATTGGC
GATAACGACTTCATCTAGCGAACGCAAAAAGGACAAATCACGAACCAAGT
ACCGTATAAGTTTGCAACATCAACTGATTGATGCTTATAAGGTTATGGAA
GAGAAAGAGCTATATCCTTGGGACCAAATGGCATGTGAAATTGGAGGTCT
TATCGGGTTGGCTATTGGTGCATCCATAATTTCTTTGGTAGAGGTTATAG
TGTACGCATTTTTGGTGATTGTTAATAAAGTGATCTGAGGAAAATTAGCC
GCTAACAAAGGCATTTAACTAATATGAACAAAACGATATAGCAAAAACGA
CCTTTTGGAAGGAAAATAGGAGCTgaagaaatttccaaattctTTTGGAA
AAGTCCTGCGTCATAAATTGatactagccgtcccggcgtcgtccgagacg
acttcttactccttttaatacgctcgcttcgctcgcttttctatttttca
gaaacttgtagggaTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00049884-exon-scaffold_167-1491911889:357882..357993 | TCONS_00049884-exon-scaffold_167-1491911889:357882..357993 | Clytia hemisphaerica | exon |
TCONS_00049884-exon-scaffold_167-1510915933:357882..357993 | TCONS_00049884-exon-scaffold_167-1510915933:357882..357993 | Clytia hemisphaerica | exon |
TCONS_00049884-exon-scaffold_167-1575043694:357882..357993 | TCONS_00049884-exon-scaffold_167-1575043694:357882..357993 | Clytia hemisphaerica | exon |
TCONS_00049884-exon-scaffold_167-1491911889:358439..359997 | TCONS_00049884-exon-scaffold_167-1491911889:358439..359997 | Clytia hemisphaerica | exon |
TCONS_00049884-exon-scaffold_167-1510915933:358439..359997 | TCONS_00049884-exon-scaffold_167-1510915933:358439..359997 | Clytia hemisphaerica | exon |
TCONS_00049884-exon-scaffold_167-1575043694:358439..359997 | TCONS_00049884-exon-scaffold_167-1575043694:358439..359997 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_167 | supercontig | scaffold_167:357882..359997 + |
Blast
The following BLAST results are available for this feature:
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