TCONS_00049884 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049884
Unique NameTCONS_00049884
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1671

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049884 ID=TCONS_00049884|Name=TCONS_00049884|organism=Clytia hemisphaerica|type=transcript|length=1671bp
CATGACTATCACATACTAAGCAAGGACAGACTAAACTTGTGGTTTGAATT
TGTAAACTGTAGAGAGCTCGTTTGGAAGAAAAGTCAAATCAATATAATGG
ACCAAAATTCAGGATCCCGGTATGTGGAAAGTTCTCTGATGACATTGATC
GAAGATGAAGACGATAATAAGTGGCATGAACAGCAATTAAGTCGTAAAAT
GGTCATTAAAACGAAAACAGAAGAATACATTAACACTTTCACCTTCCATG
GTCTTACCAGAGTGTTCAAAGGTGAACGGATCGAATCTGTATTTTGGTTA
TTTATGATATTAGGTGGTGTGTCATTATCGGGAGTTGTCGTTAATCGCCT
AGTTACCAGAtatcaaaaacatgaaatttacaCGGAGATTCAAACTAAAA
TCACAGATGAAAACTTCTTCCCAAGTGTGACATTTTGTGAGAATCAGCTA
TTAATTGATAGCTATTTTTCATATTGTGGCGTTGCACCGAGACATGGACA
TGAAAATCATCACAAAGTTTGTGACTACATAATGAAAGAACCGGAAGAAT
CCATCGAGGAATCTCGAAATAAATTCTGGTATAACGGTCTATTTAACATT
ACAAAATGCGAAACATGGGGAGGCAAGAAATGCGCCAGTAGTGATTATTT
CAAGACTCTAAACCATTTCAACCATTCATGTATCACTTGGAATTATGCAG
GTAATTTGAGTGATGTCTATAGCCATGTTGATATTGAGTTTGATGTTAAG
CCACTATCTTGGCTTGGTAAAAACGAAGGTATACGAGAACATTTACGAGA
AGGTATATTTGCACTGCCACATGACCATAGAATATACGAAATTGACATAG
TGAACAAATTAGACATTGAACCGTATAAAACATATGAAATCAAATTAGAC
ACAACCGTTATAAAAAGACTACCACACCCTTTCCCCTCTAAGTGCGCAAG
TAGTAAGGGTGATGAcatttttcctggaaaataCACGCGAAGATCATGCA
TTGAATCACACAACTATATCGAAATGTACAAAAAATGTGGGGACACTTTG
GATTACGTACGCCAATTTATTCCACCTGATATTAAGAAACAATACAAAGG
GAATAAAACTATTAGAGAAGCAGAAAAGTGTGTTTGGTTATTTGGGAAAG
GAGAAacacaaaaaactaaaaactgtAATCTTCCTTGCCAAGAACTGCAA
TTGGCGATAACGACTTCATCTAGCGAACGCAAAAAGGACAAATCACGAAC
CAAGTACCGTATAAGTTTGCAACATCAACTGATTGATGCTTATAAGGTTA
TGGAAGAGAAAGAGCTATATCCTTGGGACCAAATGGCATGTGAAATTGGA
GGTCTTATCGGGTTGGCTATTGGTGCATCCATAATTTCTTTGGTAGAGGT
TATAGTGTACGCATTTTTGGTGATTGTTAATAAAGTGATCTGAGGAAAAT
TAGCCGCTAACAAAGGCATTTAACTAATATGAACAAAACGATATAGCAAA
AACGACCTTTTGGAAGGAAAATAGGAGCTgaagaaatttccaaattctTT
TGGAAAAGTCCTGCGTCATAAATTGatactagccgtcccggcgtcgtccg
agacgacttcttactccttttaatacgctcgcttcgctcgcttttctatt
tttcagaaacttgtagggaTT
Run BLAST on NCBI

transcript from alignment at scaffold_167:357882..359997+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049884 ID=TCONS_00049884|Name=TCONS_00049884|organism=Clytia hemisphaerica|type=transcript|length=2116bp|location=Sequence derived from alignment at scaffold_167:357882..359997+ (Clytia hemisphaerica)
CATGACTATCACATACTAAGCAAGGACAGACTAAACTTGTGGTTTGAATT TGTAAACTGTAGAGAGCTCGTTTGGAAGAAAAGTCAAATCAATATAATGG ACCAAAATTCAGGTAAGCTTTTTAATAACATACGAAATACTAATGTATAT TCTTTTGAAATCAACGAGGAAGGGATTAAATAAGCTCTAAGATAGTAAGT GCGGAGCTGTCATTATAAGCTGTCATAGGCACACAAGTTTCCGACTGCAT TCAAGGGCGATACGAAGactcccttttctctagctgtctactCGAAGATA GGGCAATGAGCAACTCCTTTCCcaggatttctccacttacccttgatctg tctctttaattgctgagcatcaagtaaAGAGGCattaagtaccattttgg gaatcttccAGTATGACCTTGGATGGGGGTCGAACCACCCACAACTTGCG CACCGAAACTGGAAGCTCTATCTTCAATCTGGCAGTCAAAGCTGGCATAC AGAGTTATAATAGTATATATAATAAATGTaaattgtaataaaatatttct tatctAGGATCCCGGTATGTGGAAAGTTCTCTGATGACATTGATCGAAGA TGAAGACGATAATAAGTGGCATGAACAGCAATTAAGTCGTAAAATGGTCA TTAAAACGAAAACAGAAGAATACATTAACACTTTCACCTTCCATGGTCTT ACCAGAGTGTTCAAAGGTGAACGGATCGAATCTGTATTTTGGTTATTTAT GATATTAGGTGGTGTGTCATTATCGGGAGTTGTCGTTAATCGCCTAGTTA CCAGAtatcaaaaacatgaaatttacaCGGAGATTCAAACTAAAATCACA GATGAAAACTTCTTCCCAAGTGTGACATTTTGTGAGAATCAGCTATTAAT TGATAGCTATTTTTCATATTGTGGCGTTGCACCGAGACATGGACATGAAA ATCATCACAAAGTTTGTGACTACATAATGAAAGAACCGGAAGAATCCATC GAGGAATCTCGAAATAAATTCTGGTATAACGGTCTATTTAACATTACAAA ATGCGAAACATGGGGAGGCAAGAAATGCGCCAGTAGTGATTATTTCAAGA CTCTAAACCATTTCAACCATTCATGTATCACTTGGAATTATGCAGGTAAT TTGAGTGATGTCTATAGCCATGTTGATATTGAGTTTGATGTTAAGCCACT ATCTTGGCTTGGTAAAAACGAAGGTATACGAGAACATTTACGAGAAGGTA TATTTGCACTGCCACATGACCATAGAATATACGAAATTGACATAGTGAAC AAATTAGACATTGAACCGTATAAAACATATGAAATCAAATTAGACACAAC CGTTATAAAAAGACTACCACACCCTTTCCCCTCTAAGTGCGCAAGTAGTA AGGGTGATGAcatttttcctggaaaataCACGCGAAGATCATGCATTGAA TCACACAACTATATCGAAATGTACAAAAAATGTGGGGACACTTTGGATTA CGTACGCCAATTTATTCCACCTGATATTAAGAAACAATACAAAGGGAATA AAACTATTAGAGAAGCAGAAAAGTGTGTTTGGTTATTTGGGAAAGGAGAA acacaaaaaactaaaaactgtAATCTTCCTTGCCAAGAACTGCAATTGGC GATAACGACTTCATCTAGCGAACGCAAAAAGGACAAATCACGAACCAAGT ACCGTATAAGTTTGCAACATCAACTGATTGATGCTTATAAGGTTATGGAA GAGAAAGAGCTATATCCTTGGGACCAAATGGCATGTGAAATTGGAGGTCT TATCGGGTTGGCTATTGGTGCATCCATAATTTCTTTGGTAGAGGTTATAG TGTACGCATTTTTGGTGATTGTTAATAAAGTGATCTGAGGAAAATTAGCC GCTAACAAAGGCATTTAACTAATATGAACAAAACGATATAGCAAAAACGA CCTTTTGGAAGGAAAATAGGAGCTgaagaaatttccaaattctTTTGGAA AAGTCCTGCGTCATAAATTGatactagccgtcccggcgtcgtccgagacg acttcttactccttttaatacgctcgcttcgctcgcttttctatttttca gaaacttgtagggaTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031628XLOC_031628Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049884-exon-scaffold_167-1491911889:357882..357993TCONS_00049884-exon-scaffold_167-1491911889:357882..357993Clytia hemisphaericaexon
TCONS_00049884-exon-scaffold_167-1510915933:357882..357993TCONS_00049884-exon-scaffold_167-1510915933:357882..357993Clytia hemisphaericaexon
TCONS_00049884-exon-scaffold_167-1575043694:357882..357993TCONS_00049884-exon-scaffold_167-1575043694:357882..357993Clytia hemisphaericaexon
TCONS_00049884-exon-scaffold_167-1491911889:358439..359997TCONS_00049884-exon-scaffold_167-1491911889:358439..359997Clytia hemisphaericaexon
TCONS_00049884-exon-scaffold_167-1510915933:358439..359997TCONS_00049884-exon-scaffold_167-1510915933:358439..359997Clytia hemisphaericaexon
TCONS_00049884-exon-scaffold_167-1575043694:358439..359997TCONS_00049884-exon-scaffold_167-1575043694:358439..359997Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:357882..359997 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.441817 0.0821412 0.297436 0 0 0 0 0 0 0 0.125146 5.94952 3.30305 0 0.0192658 0.695839 1.0747 8.7824 9.90524 1.45562 1.62968 1.54727 0.541028 1.53278 1.62811 2.10003 1.07692 0.309879 0.179312
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049884 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top