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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049884 ID=TCONS_00049884|Name=TCONS_00049884|organism=Clytia hemisphaerica|type=transcript|length=1671bp
CATGACTATCACATACTAAGCAAGGACAGACTAAACTTGTGGTTTGAATT
TGTAAACTGTAGAGAGCTCGTTTGGAAGAAAAGTCAAATCAATATAATGG
ACCAAAATTCAGGATCCCGGTATGTGGAAAGTTCTCTGATGACATTGATC
GAAGATGAAGACGATAATAAGTGGCATGAACAGCAATTAAGTCGTAAAAT
GGTCATTAAAACGAAAACAGAAGAATACATTAACACTTTCACCTTCCATG
GTCTTACCAGAGTGTTCAAAGGTGAACGGATCGAATCTGTATTTTGGTTA
TTTATGATATTAGGTGGTGTGTCATTATCGGGAGTTGTCGTTAATCGCCT
AGTTACCAGAtatcaaaaacatgaaatttacaCGGAGATTCAAACTAAAA
TCACAGATGAAAACTTCTTCCCAAGTGTGACATTTTGTGAGAATCAGCTA
TTAATTGATAGCTATTTTTCATATTGTGGCGTTGCACCGAGACATGGACA
TGAAAATCATCACAAAGTTTGTGACTACATAATGAAAGAACCGGAAGAAT
CCATCGAGGAATCTCGAAATAAATTCTGGTATAACGGTCTATTTAACATT
ACAAAATGCGAAACATGGGGAGGCAAGAAATGCGCCAGTAGTGATTATTT
CAAGACTCTAAACCATTTCAACCATTCATGTATCACTTGGAATTATGCAG
GTAATTTGAGTGATGTCTATAGCCATGTTGATATTGAGTTTGATGTTAAG
CCACTATCTTGGCTTGGTAAAAACGAAGGTATACGAGAACATTTACGAGA
AGGTATATTTGCACTGCCACATGACCATAGAATATACGAAATTGACATAG
TGAACAAATTAGACATTGAACCGTATAAAACATATGAAATCAAATTAGAC
ACAACCGTTATAAAAAGACTACCACACCCTTTCCCCTCTAAGTGCGCAAG
TAGTAAGGGTGATGAcatttttcctggaaaataCACGCGAAGATCATGCA
TTGAATCACACAACTATATCGAAATGTACAAAAAATGTGGGGACACTTTG
GATTACGTACGCCAATTTATTCCACCTGATATTAAGAAACAATACAAAGG
GAATAAAACTATTAGAGAAGCAGAAAAGTGTGTTTGGTTATTTGGGAAAG
GAGAAacacaaaaaactaaaaactgtAATCTTCCTTGCCAAGAACTGCAA
TTGGCGATAACGACTTCATCTAGCGAACGCAAAAAGGACAAATCACGAAC
CAAGTACCGTATAAGTTTGCAACATCAACTGATTGATGCTTATAAGGTTA
TGGAAGAGAAAGAGCTATATCCTTGGGACCAAATGGCATGTGAAATTGGA
GGTCTTATCGGGTTGGCTATTGGTGCATCCATAATTTCTTTGGTAGAGGT
TATAGTGTACGCATTTTTGGTGATTGTTAATAAAGTGATCTGAGGAAAAT
TAGCCGCTAACAAAGGCATTTAACTAATATGAACAAAACGATATAGCAAA
AACGACCTTTTGGAAGGAAAATAGGAGCTgaagaaatttccaaattctTT
TGGAAAAGTCCTGCGTCATAAATTGatactagccgtcccggcgtcgtccg
agacgacttcttactccttttaatacgctcgcttcgctcgcttttctatt
tttcagaaacttgtagggaTT Run BLAST on NCBI transcript from alignment at scaffold_167:357882..359997+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049884 ID=TCONS_00049884|Name=TCONS_00049884|organism=Clytia hemisphaerica|type=transcript|length=2116bp|location=Sequence derived from alignment at scaffold_167:357882..359997+ (Clytia hemisphaerica)
CATGACTATCACATACTAAGCAAGGACAGACTAAACTTGTGGTTTGAATT
TGTAAACTGTAGAGAGCTCGTTTGGAAGAAAAGTCAAATCAATATAATGG
ACCAAAATTCAGGTAAGCTTTTTAATAACATACGAAATACTAATGTATAT
TCTTTTGAAATCAACGAGGAAGGGATTAAATAAGCTCTAAGATAGTAAGT
GCGGAGCTGTCATTATAAGCTGTCATAGGCACACAAGTTTCCGACTGCAT
TCAAGGGCGATACGAAGactcccttttctctagctgtctactCGAAGATA
GGGCAATGAGCAACTCCTTTCCcaggatttctccacttacccttgatctg
tctctttaattgctgagcatcaagtaaAGAGGCattaagtaccattttgg
gaatcttccAGTATGACCTTGGATGGGGGTCGAACCACCCACAACTTGCG
CACCGAAACTGGAAGCTCTATCTTCAATCTGGCAGTCAAAGCTGGCATAC
AGAGTTATAATAGTATATATAATAAATGTaaattgtaataaaatatttct
tatctAGGATCCCGGTATGTGGAAAGTTCTCTGATGACATTGATCGAAGA
TGAAGACGATAATAAGTGGCATGAACAGCAATTAAGTCGTAAAATGGTCA
TTAAAACGAAAACAGAAGAATACATTAACACTTTCACCTTCCATGGTCTT
ACCAGAGTGTTCAAAGGTGAACGGATCGAATCTGTATTTTGGTTATTTAT
GATATTAGGTGGTGTGTCATTATCGGGAGTTGTCGTTAATCGCCTAGTTA
CCAGAtatcaaaaacatgaaatttacaCGGAGATTCAAACTAAAATCACA
GATGAAAACTTCTTCCCAAGTGTGACATTTTGTGAGAATCAGCTATTAAT
TGATAGCTATTTTTCATATTGTGGCGTTGCACCGAGACATGGACATGAAA
ATCATCACAAAGTTTGTGACTACATAATGAAAGAACCGGAAGAATCCATC
GAGGAATCTCGAAATAAATTCTGGTATAACGGTCTATTTAACATTACAAA
ATGCGAAACATGGGGAGGCAAGAAATGCGCCAGTAGTGATTATTTCAAGA
CTCTAAACCATTTCAACCATTCATGTATCACTTGGAATTATGCAGGTAAT
TTGAGTGATGTCTATAGCCATGTTGATATTGAGTTTGATGTTAAGCCACT
ATCTTGGCTTGGTAAAAACGAAGGTATACGAGAACATTTACGAGAAGGTA
TATTTGCACTGCCACATGACCATAGAATATACGAAATTGACATAGTGAAC
AAATTAGACATTGAACCGTATAAAACATATGAAATCAAATTAGACACAAC
CGTTATAAAAAGACTACCACACCCTTTCCCCTCTAAGTGCGCAAGTAGTA
AGGGTGATGAcatttttcctggaaaataCACGCGAAGATCATGCATTGAA
TCACACAACTATATCGAAATGTACAAAAAATGTGGGGACACTTTGGATTA
CGTACGCCAATTTATTCCACCTGATATTAAGAAACAATACAAAGGGAATA
AAACTATTAGAGAAGCAGAAAAGTGTGTTTGGTTATTTGGGAAAGGAGAA
acacaaaaaactaaaaactgtAATCTTCCTTGCCAAGAACTGCAATTGGC
GATAACGACTTCATCTAGCGAACGCAAAAAGGACAAATCACGAACCAAGT
ACCGTATAAGTTTGCAACATCAACTGATTGATGCTTATAAGGTTATGGAA
GAGAAAGAGCTATATCCTTGGGACCAAATGGCATGTGAAATTGGAGGTCT
TATCGGGTTGGCTATTGGTGCATCCATAATTTCTTTGGTAGAGGTTATAG
TGTACGCATTTTTGGTGATTGTTAATAAAGTGATCTGAGGAAAATTAGCC
GCTAACAAAGGCATTTAACTAATATGAACAAAACGATATAGCAAAAACGA
CCTTTTGGAAGGAAAATAGGAGCTgaagaaatttccaaattctTTTGGAA
AAGTCCTGCGTCATAAATTGatactagccgtcccggcgtcgtccgagacg
acttcttactccttttaatacgctcgcttcgctcgcttttctatttttca
gaaacttgtagggaTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049884-exon-scaffold_167-1491911889:357882..357993 | TCONS_00049884-exon-scaffold_167-1491911889:357882..357993 | Clytia hemisphaerica | exon |
| TCONS_00049884-exon-scaffold_167-1510915933:357882..357993 | TCONS_00049884-exon-scaffold_167-1510915933:357882..357993 | Clytia hemisphaerica | exon |
| TCONS_00049884-exon-scaffold_167-1575043694:357882..357993 | TCONS_00049884-exon-scaffold_167-1575043694:357882..357993 | Clytia hemisphaerica | exon |
| TCONS_00049884-exon-scaffold_167-1491911889:358439..359997 | TCONS_00049884-exon-scaffold_167-1491911889:358439..359997 | Clytia hemisphaerica | exon |
| TCONS_00049884-exon-scaffold_167-1510915933:358439..359997 | TCONS_00049884-exon-scaffold_167-1510915933:358439..359997 | Clytia hemisphaerica | exon |
| TCONS_00049884-exon-scaffold_167-1575043694:358439..359997 | TCONS_00049884-exon-scaffold_167-1575043694:358439..359997 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:357882..359997 + |
Blast
The following BLAST results are available for this feature:
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