TCONS_00049624 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049624
Unique NameTCONS_00049624
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length580

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049624 ID=TCONS_00049624|Name=TCONS_00049624|organism=Clytia hemisphaerica|type=transcript|length=580bp
CTTGAAGAACTAGCTATTTTGAAATATGTGTTTCAACATAATTTAGAGGT
ATCAGAAATAACAACATTTGCACCGTCTTTAACAGGAAAATACCCAATCA
AAGCAGAGAAATTGGAGGCTTTAAAAACGGGAAAAGTCTTACTCACTTGT
TATAGAGGTTTCAGAGGTTGCGAAATGGACCATTGTGTTTTATTTGTTAA
CCCTCAAGATAAAGTTCCAAAGAACTTGTACATTGAGATGCTCACTCGTG
CCATCAACTTCGTAGACATAATCGTTCTTCCTGAAAAGAAATCAAGCAGG
GTATCTCGTTTGATTGGAATTTTCGATAAATGGCTGCAAGCTGGTCTCGT
TTCTCCTACACACGCTAAACGTTCAAGTACAAACATTATTTTCTCGTCTT
TGGAAGAGCTAGATGTTATTGTACCACTTGATCAAACCTGCGATCATAAT
GTTGAAAGACAGATTCTTCAAGTCATCGAGGATAGCTCGTTATTCAATCA
CTCCCACATCGACGCAGCAGTAACgaaTCTGCAACAATTTAGGACTAGAC
ATTTCGGATTCGAACTTCGAGACACAGCAC
Run BLAST on NCBI

protein sequence of TCONS_00049624-protein

>TCONS_00049624-protein ID=TCONS_00049624-protein|Name=TCONS_00049624-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
LEELAILKYVFQHNLEVSEITTFAPSLTGKYPIKAEKLEALKTGKVLLTC
YRGFRGCEMDHCVLFVNPQDKVPKNLYIEMLTRAINFVDIIVLPEKKSSR
VSRLIGIFDKWLQAGLVSPTHAKRSSTNIIFSSLEELDVIVPLDQTCDHN
VERQILQVIEDSSLFNHSHIDAAVTNLQQFRTRHFGFELRDTA
Run BLAST on NCBI

transcript from alignment at scaffold_162:97557..99751-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049624 ID=TCONS_00049624|Name=TCONS_00049624|organism=Clytia hemisphaerica|type=transcript|length=2195bp|location=Sequence derived from alignment at scaffold_162:97557..99751- (Clytia hemisphaerica)
CTTGAAGAACTAGCTATTTTGAAATATGTGTTTCAACATAATTTAGAGGT ATCAGAAATAACAACATTTGCACCGTCTTTAACAGGAAAATACCCAATCA AAGCAGAGAAATTGGAGGCTTTAAAAACGGGAAAAGTCTTACTCACTTGT TATAGAGGTTTCAGAGGTTGCGAAATGGACCATTGTGTTTTATTTGTTAA CCCTCAAGATAAAGTTCCAAAGAACTTGTACATTGAGATGCTCACTCGTG CCATCAACTTCGTAGACATAATCGTTCTTCCTGAAAAGAAATCAAGCAGG GTATCTCGTTTGATTGGAATTTTCGATAAATGGCTGCAAGCTGGTCTCGT TTCTCCTACACACGCTAAACGTTCAAGTACAAACATTATTTTCTCGTCTT TGGAAGAGCTAGATGTTATTGTACCACTTGATCAAACCTGCGATCATAAT GTTGAAAGACAGATTCTTCAAGTCATCGAGGATAGCTCGTTATTCAATCA CTCCCACATCGACGCAGCAGTAACGTAAGTAGAACTTATTGTATATCGGT ACTTTACATGCAATATTCATAGCAACCTTTGTTACTTTTTTACAACGTAA GTGTTTCATCTTAGTATACTTTAGGCGTACAAACTTTCGCGTGCAGAAAC TTTCGCGAGGACGAAAAATCGCGAAATTCACGACATTTACTTTCGCGAAT TTAACGGAAAAATATTTTTCGCGAGCATAAACTTTCGCGAATGAAGACGT AAAATTGAGAATTTTCTCATGAAAAAATGGCTTAGGTGGACAAAAATTTC TTGGATTAGCTTGAAACATTTGTCCTTGGTTAAAAAGCAGGCTAAAAGCG TCATAAAAGTTACATTTTATTCAAAGTTTGAAGTTTTACAGATTTTCCAT TTTGTCAAGGATTTTTCGCGCGCATAAACTTTCGCGAATGGCCCTTCCTA GAATTTTTAAAAACATTTACTTTCGCGAAAAGGGCCAAAACTCGCGAAAA TCGCGAAAGTTTCTGCTCGCGAAAGTTTCTACGCCTAAAGTAGTCTCGAA AGTTTATTACTTACAACAGAACCTACACTAAGTGCGTAACGTAATATCAT TAGTTCTAAAAGAATCGAAGATACAGAGCACATATTCTCATTGTAACCTT CATCCGATAACATCCCTGTACATAACTAGTCTTGTGATACCAACGGAAGC AGATTTTGAAAATGCTTTGGTTTTAAAGAAAGTTATTTTTTCTTATTTTT TCAGGAATCTGCAACAATTTAGGACTAGGTATATTTCCAATGAAATAACT TTTAAGGGCCATGCCCTTTTTGCTAAGTATTTAAGGAAATGTAACTAGTT CAAACCCTACCTCTAGTCTTTGAAGATTTTAGTTACCCGTTCAAAGCTTG TTAGATAACACAAAGGCTCCTTTACCTTTTGATTGGCGGGAAGAGTGTTG TTTATACATTCAAGCATCGTCATTTTTTTCTATAGCACAGAAACTAAACC TTACCTGTCTTCATGAAAAAGACTGTTTAGATGTTAGTTTTGGACGTACT GTATGGAGGGAGCCTTTTACACTCCGGGACTGAATTTTGATTGTAGCCCT GTTATTGAAGAGAACGTACTGGCTTTTTCGGATCGCGTTCACATTGTAAA TGGTGAAGTATGTGCATGTAGGCAGATAAATTAGCAACTAGGTTCTTTAA TACCCAATTACGCAAGCCTAACTGTGCGATGGCTGGTTGTGCCTCGTCGC CAATTGTCTCAAAATTAGAGAAGAAAGGAGGTAAGCAGAATCTTGAGCAA ACTTTTACCTGTCCCAAAGCCATTTCTGTCTAGGGTAAAGGGAGGCAACA CTCCTTCTTACAGCCCCACTGGGAATCCTCCCCACTGGAAAAAATAGCCA AAATTTTGTCCCCACTGAAAATAGATCACCGCAAATTATTGTGCTATTTT TTCCAACTGAATTTTCTGCTCAAAAACAATAGAATTCAAATCCTCAGTCA TGAGCAAAATGGGAATATTAATCCCCATTGAGTTTTGGCTGAAAAAATCT CACCGGGTCTGTGAGAAGGGTGCGTGAGGCAGGAAAAAAAGATTCAAAGA GTAGGAAAACACTCTTGCTTTCTGCTTGGTCGAATTCCCTTTTCATCCTT CCTTGTCTTGTAGACATTTCGGATTCGAACTTCGAGACACAGCAC

Coding sequence (CDS) from alignment at scaffold_162:97557..99751-

>TCONS_00049624 ID=TCONS_00049624|Name=TCONS_00049624|organism=Clytia hemisphaerica|type=CDS|length=1737bp|location=Sequence derived from alignment at scaffold_162:97557..99751- (Clytia hemisphaerica)
ACATTTCGGATTCGAACTTCGAGACACAGCAGAATCTGCAACAATTTAGG
ACTAGCTTGAAGAACTAGCTATTTTGAAATATGTGTTTCAACATAATTTA
GAGGTATCAGAAATAACAACATTTGCACCGTCTTTAACAGGAAAATACCC
AATCAAAGCAGAGAAATTGGAGGCTTTAAAAACGGGAAAAGTCTTACTCA
CTTGTTATAGAGGTTTCAGAGGTTGCGAAATGGACCATTGTGTTTTATTT
GTTAACCCTCAAGATAAAGTTCCAAAGAACTTGTACATTGAGATGCTCAC
TCGTGCCATCAACTTCGTAGACATAATCGTTCTTCCTGAAAAGAAATCAA
GCAGGGTATCTCGTTTGATTGGAATTTTCGATAAATGGCTGCAAGCTGGT
CTCGTTTCTCCTACACACGCTAAACGTTCAAGTACAAACATTATTTTCTC
GTCTTTGGAAGAGCTAGATGTTATTGTACCACTTGATCAAACCTGCGATC
ATAATGTTGAAAGACAGATTCTTCAAGTCATCGAGGATAGCTCGTTATTC
AATCACTCCCACATCGACGCAGCAGTAACACATTTCGGATTCGAACTTCG
AGACACAGCAGAATCTGCAACAATTTAGGACTAGCTTGAAGAACTAGCTA
TTTTGAAATATGTGTTTCAACATAATTTAGAGGTATCAGAAATAACAACA
TTTGCACCGTCTTTAACAGGAAAATACCCAATCAAAGCAGAGAAATTGGA
GGCTTTAAAAACGGGAAAAGTCTTACTCACTTGTTATAGAGGTTTCAGAG
GTTGCGAAATGGACCATTGTGTTTTATTTGTTAACCCTCAAGATAAAGTT
CCAAAGAACTTGTACATTGAGATGCTCACTCGTGCCATCAACTTCGTAGA
CATAATCGTTCTTCCTGAAAAGAAATCAAGCAGGGTATCTCGTTTGATTG
GAATTTTCGATAAATGGCTGCAAGCTGGTCTCGTTTCTCCTACACACGCT
AAACGTTCAAGTACAAACATTATTTTCTCGTCTTTGGAAGAGCTAGATGT
TATTGTACCACTTGATCAAACCTGCGATCATAATGTTGAAAGACAGATTC
TTCAAGTCATCGAGGATAGCTCGTTATTCAATCACTCCCACATCGACGCA
GCAGTAACACATTTCGGATTCGAACTTCGAGACACAGCAGAATCTGCAAC
AATTTAGGACTAGCTTGAAGAACTAGCTATTTTGAAATATGTGTTTCAAC
ATAATTTAGAGGTATCAGAAATAACAACATTTGCACCGTCTTTAACAGGA
AAATACCCAATCAAAGCAGAGAAATTGGAGGCTTTAAAAACGGGAAAAGT
CTTACTCACTTGTTATAGAGGTTTCAGAGGTTGCGAAATGGACCATTGTG
TTTTATTTGTTAACCCTCAAGATAAAGTTCCAAAGAACTTGTACATTGAG
ATGCTCACTCGTGCCATCAACTTCGTAGACATAATCGTTCTTCCTGAAAA
GAAATCAAGCAGGGTATCTCGTTTGATTGGAATTTTCGATAAATGGCTGC
AAGCTGGTCTCGTTTCTCCTACACACGCTAAACGTTCAAGTACAAACATT
ATTTTCTCGTCTTTGGAAGAGCTAGATGTTATTGTACCACTTGATCAAAC
CTGCGATCATAATGTTGAAAGACAGATTCTTCAAGTCATCGAGGATAGCT
CGTTATTCAATCACTCCCACATCGACGCAGCAGTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031463XLOC_031463Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049624-proteinTCONS_00049624-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049624-exon-scaffold_162-1575043694:99228..99751TCONS_00049624-exon-scaffold_162-1575043694:99228..99751Clytia hemisphaericaexon
TCONS_00049624-exon-scaffold_162-1575043694:98474..98497TCONS_00049624-exon-scaffold_162-1575043694:98474..98497Clytia hemisphaericaexon
TCONS_00049624-exon-scaffold_162-1575043694:97557..97588TCONS_00049624-exon-scaffold_162-1575043694:97557..97588Clytia hemisphaericaexon
TCONS_00049624-exon-scaffold_162-1510915933:99228..99751TCONS_00049624-exon-scaffold_162-1510915933:99228..99751Clytia hemisphaericaexon
TCONS_00049624-exon-scaffold_162-1510915933:98474..98497TCONS_00049624-exon-scaffold_162-1510915933:98474..98497Clytia hemisphaericaexon
TCONS_00049624-exon-scaffold_162-1510915933:97557..97588TCONS_00049624-exon-scaffold_162-1510915933:97557..97588Clytia hemisphaericaexon
TCONS_00049624-exon-scaffold_162-1491911889:99228..99751TCONS_00049624-exon-scaffold_162-1491911889:99228..99751Clytia hemisphaericaexon
TCONS_00049624-exon-scaffold_162-1491911889:98474..98497TCONS_00049624-exon-scaffold_162-1491911889:98474..98497Clytia hemisphaericaexon
TCONS_00049624-exon-scaffold_162-1491911889:97557..97588TCONS_00049624-exon-scaffold_162-1491911889:97557..97588Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_162supercontigscaffold_162:97557..99751 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0563927 0 0 0 0 0 0 0 0.377022 0 0 3.29443 2.64007 1.73388 1.86107 0 0.201762 2.64639 6.21781 1.77828 0.920659 2.12645 2.71959 0.0655264 0 15.4321 11.2721 11.0438 10.4546
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049624 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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