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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049624 ID=TCONS_00049624|Name=TCONS_00049624|organism=Clytia hemisphaerica|type=transcript|length=580bp
CTTGAAGAACTAGCTATTTTGAAATATGTGTTTCAACATAATTTAGAGGT
ATCAGAAATAACAACATTTGCACCGTCTTTAACAGGAAAATACCCAATCA
AAGCAGAGAAATTGGAGGCTTTAAAAACGGGAAAAGTCTTACTCACTTGT
TATAGAGGTTTCAGAGGTTGCGAAATGGACCATTGTGTTTTATTTGTTAA
CCCTCAAGATAAAGTTCCAAAGAACTTGTACATTGAGATGCTCACTCGTG
CCATCAACTTCGTAGACATAATCGTTCTTCCTGAAAAGAAATCAAGCAGG
GTATCTCGTTTGATTGGAATTTTCGATAAATGGCTGCAAGCTGGTCTCGT
TTCTCCTACACACGCTAAACGTTCAAGTACAAACATTATTTTCTCGTCTT
TGGAAGAGCTAGATGTTATTGTACCACTTGATCAAACCTGCGATCATAAT
GTTGAAAGACAGATTCTTCAAGTCATCGAGGATAGCTCGTTATTCAATCA
CTCCCACATCGACGCAGCAGTAACgaaTCTGCAACAATTTAGGACTAGAC
ATTTCGGATTCGAACTTCGAGACACAGCAC Run BLAST on NCBI protein sequence of TCONS_00049624-protein >TCONS_00049624-protein ID=TCONS_00049624-protein|Name=TCONS_00049624-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
LEELAILKYVFQHNLEVSEITTFAPSLTGKYPIKAEKLEALKTGKVLLTC
YRGFRGCEMDHCVLFVNPQDKVPKNLYIEMLTRAINFVDIIVLPEKKSSR
VSRLIGIFDKWLQAGLVSPTHAKRSSTNIIFSSLEELDVIVPLDQTCDHN
VERQILQVIEDSSLFNHSHIDAAVTNLQQFRTRHFGFELRDTA Run BLAST on NCBI transcript from alignment at scaffold_162:97557..99751- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049624 ID=TCONS_00049624|Name=TCONS_00049624|organism=Clytia hemisphaerica|type=transcript|length=2195bp|location=Sequence derived from alignment at scaffold_162:97557..99751- (Clytia hemisphaerica)
CTTGAAGAACTAGCTATTTTGAAATATGTGTTTCAACATAATTTAGAGGT
ATCAGAAATAACAACATTTGCACCGTCTTTAACAGGAAAATACCCAATCA
AAGCAGAGAAATTGGAGGCTTTAAAAACGGGAAAAGTCTTACTCACTTGT
TATAGAGGTTTCAGAGGTTGCGAAATGGACCATTGTGTTTTATTTGTTAA
CCCTCAAGATAAAGTTCCAAAGAACTTGTACATTGAGATGCTCACTCGTG
CCATCAACTTCGTAGACATAATCGTTCTTCCTGAAAAGAAATCAAGCAGG
GTATCTCGTTTGATTGGAATTTTCGATAAATGGCTGCAAGCTGGTCTCGT
TTCTCCTACACACGCTAAACGTTCAAGTACAAACATTATTTTCTCGTCTT
TGGAAGAGCTAGATGTTATTGTACCACTTGATCAAACCTGCGATCATAAT
GTTGAAAGACAGATTCTTCAAGTCATCGAGGATAGCTCGTTATTCAATCA
CTCCCACATCGACGCAGCAGTAACGTAAGTAGAACTTATTGTATATCGGT
ACTTTACATGCAATATTCATAGCAACCTTTGTTACTTTTTTACAACGTAA
GTGTTTCATCTTAGTATACTTTAGGCGTACAAACTTTCGCGTGCAGAAAC
TTTCGCGAGGACGAAAAATCGCGAAATTCACGACATTTACTTTCGCGAAT
TTAACGGAAAAATATTTTTCGCGAGCATAAACTTTCGCGAATGAAGACGT
AAAATTGAGAATTTTCTCATGAAAAAATGGCTTAGGTGGACAAAAATTTC
TTGGATTAGCTTGAAACATTTGTCCTTGGTTAAAAAGCAGGCTAAAAGCG
TCATAAAAGTTACATTTTATTCAAAGTTTGAAGTTTTACAGATTTTCCAT
TTTGTCAAGGATTTTTCGCGCGCATAAACTTTCGCGAATGGCCCTTCCTA
GAATTTTTAAAAACATTTACTTTCGCGAAAAGGGCCAAAACTCGCGAAAA
TCGCGAAAGTTTCTGCTCGCGAAAGTTTCTACGCCTAAAGTAGTCTCGAA
AGTTTATTACTTACAACAGAACCTACACTAAGTGCGTAACGTAATATCAT
TAGTTCTAAAAGAATCGAAGATACAGAGCACATATTCTCATTGTAACCTT
CATCCGATAACATCCCTGTACATAACTAGTCTTGTGATACCAACGGAAGC
AGATTTTGAAAATGCTTTGGTTTTAAAGAAAGTTATTTTTTCTTATTTTT
TCAGGAATCTGCAACAATTTAGGACTAGGTATATTTCCAATGAAATAACT
TTTAAGGGCCATGCCCTTTTTGCTAAGTATTTAAGGAAATGTAACTAGTT
CAAACCCTACCTCTAGTCTTTGAAGATTTTAGTTACCCGTTCAAAGCTTG
TTAGATAACACAAAGGCTCCTTTACCTTTTGATTGGCGGGAAGAGTGTTG
TTTATACATTCAAGCATCGTCATTTTTTTCTATAGCACAGAAACTAAACC
TTACCTGTCTTCATGAAAAAGACTGTTTAGATGTTAGTTTTGGACGTACT
GTATGGAGGGAGCCTTTTACACTCCGGGACTGAATTTTGATTGTAGCCCT
GTTATTGAAGAGAACGTACTGGCTTTTTCGGATCGCGTTCACATTGTAAA
TGGTGAAGTATGTGCATGTAGGCAGATAAATTAGCAACTAGGTTCTTTAA
TACCCAATTACGCAAGCCTAACTGTGCGATGGCTGGTTGTGCCTCGTCGC
CAATTGTCTCAAAATTAGAGAAGAAAGGAGGTAAGCAGAATCTTGAGCAA
ACTTTTACCTGTCCCAAAGCCATTTCTGTCTAGGGTAAAGGGAGGCAACA
CTCCTTCTTACAGCCCCACTGGGAATCCTCCCCACTGGAAAAAATAGCCA
AAATTTTGTCCCCACTGAAAATAGATCACCGCAAATTATTGTGCTATTTT
TTCCAACTGAATTTTCTGCTCAAAAACAATAGAATTCAAATCCTCAGTCA
TGAGCAAAATGGGAATATTAATCCCCATTGAGTTTTGGCTGAAAAAATCT
CACCGGGTCTGTGAGAAGGGTGCGTGAGGCAGGAAAAAAAGATTCAAAGA
GTAGGAAAACACTCTTGCTTTCTGCTTGGTCGAATTCCCTTTTCATCCTT
CCTTGTCTTGTAGACATTTCGGATTCGAACTTCGAGACACAGCAC Coding sequence (CDS) from alignment at scaffold_162:97557..99751- >TCONS_00049624 ID=TCONS_00049624|Name=TCONS_00049624|organism=Clytia hemisphaerica|type=CDS|length=1737bp|location=Sequence derived from alignment at scaffold_162:97557..99751- (Clytia hemisphaerica)
ACATTTCGGATTCGAACTTCGAGACACAGCAGAATCTGCAACAATTTAGG
ACTAGCTTGAAGAACTAGCTATTTTGAAATATGTGTTTCAACATAATTTA
GAGGTATCAGAAATAACAACATTTGCACCGTCTTTAACAGGAAAATACCC
AATCAAAGCAGAGAAATTGGAGGCTTTAAAAACGGGAAAAGTCTTACTCA
CTTGTTATAGAGGTTTCAGAGGTTGCGAAATGGACCATTGTGTTTTATTT
GTTAACCCTCAAGATAAAGTTCCAAAGAACTTGTACATTGAGATGCTCAC
TCGTGCCATCAACTTCGTAGACATAATCGTTCTTCCTGAAAAGAAATCAA
GCAGGGTATCTCGTTTGATTGGAATTTTCGATAAATGGCTGCAAGCTGGT
CTCGTTTCTCCTACACACGCTAAACGTTCAAGTACAAACATTATTTTCTC
GTCTTTGGAAGAGCTAGATGTTATTGTACCACTTGATCAAACCTGCGATC
ATAATGTTGAAAGACAGATTCTTCAAGTCATCGAGGATAGCTCGTTATTC
AATCACTCCCACATCGACGCAGCAGTAACACATTTCGGATTCGAACTTCG
AGACACAGCAGAATCTGCAACAATTTAGGACTAGCTTGAAGAACTAGCTA
TTTTGAAATATGTGTTTCAACATAATTTAGAGGTATCAGAAATAACAACA
TTTGCACCGTCTTTAACAGGAAAATACCCAATCAAAGCAGAGAAATTGGA
GGCTTTAAAAACGGGAAAAGTCTTACTCACTTGTTATAGAGGTTTCAGAG
GTTGCGAAATGGACCATTGTGTTTTATTTGTTAACCCTCAAGATAAAGTT
CCAAAGAACTTGTACATTGAGATGCTCACTCGTGCCATCAACTTCGTAGA
CATAATCGTTCTTCCTGAAAAGAAATCAAGCAGGGTATCTCGTTTGATTG
GAATTTTCGATAAATGGCTGCAAGCTGGTCTCGTTTCTCCTACACACGCT
AAACGTTCAAGTACAAACATTATTTTCTCGTCTTTGGAAGAGCTAGATGT
TATTGTACCACTTGATCAAACCTGCGATCATAATGTTGAAAGACAGATTC
TTCAAGTCATCGAGGATAGCTCGTTATTCAATCACTCCCACATCGACGCA
GCAGTAACACATTTCGGATTCGAACTTCGAGACACAGCAGAATCTGCAAC
AATTTAGGACTAGCTTGAAGAACTAGCTATTTTGAAATATGTGTTTCAAC
ATAATTTAGAGGTATCAGAAATAACAACATTTGCACCGTCTTTAACAGGA
AAATACCCAATCAAAGCAGAGAAATTGGAGGCTTTAAAAACGGGAAAAGT
CTTACTCACTTGTTATAGAGGTTTCAGAGGTTGCGAAATGGACCATTGTG
TTTTATTTGTTAACCCTCAAGATAAAGTTCCAAAGAACTTGTACATTGAG
ATGCTCACTCGTGCCATCAACTTCGTAGACATAATCGTTCTTCCTGAAAA
GAAATCAAGCAGGGTATCTCGTTTGATTGGAATTTTCGATAAATGGCTGC
AAGCTGGTCTCGTTTCTCCTACACACGCTAAACGTTCAAGTACAAACATT
ATTTTCTCGTCTTTGGAAGAGCTAGATGTTATTGTACCACTTGATCAAAC
CTGCGATCATAATGTTGAAAGACAGATTCTTCAAGTCATCGAGGATAGCT
CGTTATTCAATCACTCCCACATCGACGCAGCAGTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049624-exon-scaffold_162-1575043694:99228..99751 | TCONS_00049624-exon-scaffold_162-1575043694:99228..99751 | Clytia hemisphaerica | exon |
| TCONS_00049624-exon-scaffold_162-1575043694:98474..98497 | TCONS_00049624-exon-scaffold_162-1575043694:98474..98497 | Clytia hemisphaerica | exon |
| TCONS_00049624-exon-scaffold_162-1575043694:97557..97588 | TCONS_00049624-exon-scaffold_162-1575043694:97557..97588 | Clytia hemisphaerica | exon |
| TCONS_00049624-exon-scaffold_162-1510915933:99228..99751 | TCONS_00049624-exon-scaffold_162-1510915933:99228..99751 | Clytia hemisphaerica | exon |
| TCONS_00049624-exon-scaffold_162-1510915933:98474..98497 | TCONS_00049624-exon-scaffold_162-1510915933:98474..98497 | Clytia hemisphaerica | exon |
| TCONS_00049624-exon-scaffold_162-1510915933:97557..97588 | TCONS_00049624-exon-scaffold_162-1510915933:97557..97588 | Clytia hemisphaerica | exon |
| TCONS_00049624-exon-scaffold_162-1491911889:99228..99751 | TCONS_00049624-exon-scaffold_162-1491911889:99228..99751 | Clytia hemisphaerica | exon |
| TCONS_00049624-exon-scaffold_162-1491911889:98474..98497 | TCONS_00049624-exon-scaffold_162-1491911889:98474..98497 | Clytia hemisphaerica | exon |
| TCONS_00049624-exon-scaffold_162-1491911889:97557..97588 | TCONS_00049624-exon-scaffold_162-1491911889:97557..97588 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_162 | supercontig | scaffold_162:97557..99751 - |
Blast
The following BLAST results are available for this feature:
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