TCONS_00048876 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048876
Unique NameTCONS_00048876
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length782

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048876 ID=TCONS_00048876|Name=TCONS_00048876|organism=Clytia hemisphaerica|type=transcript|length=782bp
AATAGCGCTACATCACTAGTATTGTGTAAGCGAAATGAGCAAAATACCCA
GATTCCAAGCAGAAGGTACCATAGCAAGCACAGCATCTCCTTCTTCCCGG
AAATTACAAATCAGTCAACAAAAGCAGTTCAAAAAAATGGACTCTATTGA
CGTgtacttaaaaaagaaaaaaaatcgtatGAAATATCAAATGAATTATC
ATACAAAACTCAAGAAACAAGCTGAAGATAATCTGAAGCGAATGAAGTTG
TCACACAACACACCAAAGGCGGATACAGCTAATATTACTGCACGGaaatc
aaaaggCAGCACACCAGTGGCAACCAAAACTACCAAACGTGCATCGACAG
CTTCTTTCAAAGTAGACAAAGAAGTGACCTTCAATTTCACATCAAAGCTG
AAATCACCCAAACCTGTACTTAAAGAGTCTAATCTTAACAAGAGTGCAAT
CTCCTCCTCCTACATCAAACCCACAAGAAAATCCTTCAAAAATGTCTCCA
TTCTCGACACCAAATCACCTAATGTAAAAACAACTTGCTCGTCGTCTGCA
ACGAAGAAAACACCTGCGAAGTTTGATCTTCAAGCTTCTTTGAAGAAGAG
GCTGTCTTACAAGCCGCACTCTGGAAAACTGAAGGGTTCTTACTTTGCTG
ATAAGTCGTCAGCAGGAGCTAACACCACTTTCAACGCCAATTCTACTTTT
ACGCTTTCCCCAAGGAAAGATGTCAAGCAATTGAGTAAACCAAAAGCCAA
AGCCAAGagGGAGAATCGACGTAACGAAGCTN
Run BLAST on NCBI

transcript from alignment at scaffold_148:20080..24050+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048876 ID=TCONS_00048876|Name=TCONS_00048876|organism=Clytia hemisphaerica|type=transcript|length=3971bp|location=Sequence derived from alignment at scaffold_148:20080..24050+ (Clytia hemisphaerica)
AATAGCGCTACATCACTAGTATTGTGTAAGCGAAAGTAAGCGCTCTCGAT
TCAgttaccactttcaaaaaaactcagatcaaaatattttgcttggctgg
gatcgAGCTGTCTTAAGGGTCTATATATATATAAAGCTCAGCGAATACAG
ACCATAAATTTATAACGCTTTGGCGTTGAAAGTCTTGAAGGAAAATTAAA
GCGAATAGTTACCATTTTTGATGGTCCAATCAAATTATTTGAGTTGTTTC
TGCAAGATCAACAAGCAGCCTCATATATGTATATAGATTAGCCTTTAGAA
AAGCGAGACATTTGGCGTTGCGGTGCTCCTATTCTAGGTCAGGACCTACC
GGTACAGGACCGAAAAATATCGAGCTACCTCGTATATGCCAGTAGCACTT
AATTGGTTTTTACCAACTTTTACACGAAATTATTTATCCTGTTTTTAGTG
AGCAAAATACCCAGATTCCAAGCAGAAGGTACCATAGCAAGCACAGCATC
TCCTTGTAAGTTTTCATCTTCCATTTTTCTAAATGAATTTAAACTGATGA
ACTAAAAGTCTAAACTACTTGTATTTGGGCACTACTAACCAAAAAGAATA
GTTATTGTCAAGAATTACAATTACCATTTCTACTTCTCCCAACCAAAACT
AGGAATCAGAAAACGAATGGATAGGAGTGAAAGTTCGAGTTGGTTGTAAA
GCCGATACATACCTTAATCACAATTTCTAGTGGATTGAGTTTGTTAATCT
GTCCAACGACCAAACCTTAGTTTGGGCCCTTTAGACACAGAATTTCAAGC
CTTGTTGTGGACCTAATTGCTTTACGCCGTTTCGACACTAGTTCAACCCC
ATGCTGAGTCTCAAATTCCCGTTTTTATGGCGAATTTTTCGTCCAATTTT
GGCATAGaccttttgtaaaaaaaaatgtaaacgtTTGCATTTTTATACCT
TTAAAAAGTCACATGCTCGACCATCCCCGTTTGTTACTTTTTGATGCTAA
TAAGAGTTTGACCATATGAAAAATGGCTTTGTCAGCAATCAAAATTGTTA
ATTTAAGAATTACGctaagggaattaattttcgcgtgaagtaattttcct
aattttgtagatttttggcaaaaccgcgaaaatttgaacccgcgaaatac
aaatattttgccaattttatcgaaaaatcccaaggaaaatgaaagaaatt
tgtccaaaaaaggccAAAACGGCGAACATTTATTCCcgtgaaatgcaatt
tttcaatttttatattcAGCTTCCCGGAAATTACAAATCAGTCAACAAAA
GCAGTTCAAAAAGTAAGTTGATACCGTTTACTCTCCACTAAAGATATTTA
TcagttgaaatttgagaatatttttaaactCGTTGTTATTGTTAGAGTTT
CAAATGTGGGACACACAATTCTTTATCAATCCCTGCGGGTGCGCCACAAG
AAAGAAGTTCATTATATActattttaaaactttaagtTACTTTCGAATTA
ATTGCGCTATCTTGGTTCTCTATTCTATAGAATGGACTCTATTGACGTgt
acttaaaaaagaaaaaaaatcgtatGAAATATCAAATGAATTATCATACA
AAACTCAAGGTGATTGTTCTTTTTAaactgaaattattttgattgtaTCA
ATTTGTATACCATACAAATGCTCGCTTATTTTTGAGTGCGGATTAACTGT
CATTTGAACAAAATCTGAGGTCTGTTCTAAGAGTACCCAAAGCATGAGAG
GCAGTCATCGTTAGGTAAGACGGCCTCTCGCAAATCAGAAAAGTAGGACG
AAAACTACCCAAGCATTTTTAAAGGGTATTCAACTATTTCCCTTTTGCTG
TTATTTGATTAAATTGTTAATTGATCGTTAAAAGATTCAGTGGTAATAAT
TTTGCCCTTTAATCTCAAATTTACGCTATTTTTATATTGTGTTTTTCATA
ATCatatgattttattttcaaaaaagcctCCAAAAGTTATCATTAATTCA
GCCTGGTCAGAACCCCTTGTACAAAGATTGAACCTTAGGGATTTCTAATA
ATTTACGTTATAATAACCTTTCGAGTCAATACAAATATTCAAAGTTGTTT
CTGTACTGCATTTTGaggtataagaaaaaattatttttatacctTATTTA
TGCTcattgggtcaagggctatcgtttgtCATTAGATTACTTGGATTACT
TTACGTATATGAATGAGATAGTGGAAAAATTGGCTAATGTAAGTCCTCGA
GCCTTTAGCAGCCTTATGCTTTTAAATAATTTGACCTATTAAAAAAGGTA
TAGGTTTTACCTAAAAGGCCAGTACGCTAAACATTAGAACCTGAGGTCAA
AAATGAAACGAATAGAGTTTTTGCCTCTGAAGCcgttttttgacaaatat
tgtcaTGAATCAATTTCTAGAGAGTATTTAAACCAGGGAAGGAATTAAAT
CAAAgctgaaaatgtttttcctttttgttacaCAGAAACAAGCTGAAGAT
AATCTGAAGCGAATGAAGTTGTCACACAACACACCAAAGGCGGATACAGC
TAATATTACTGCACGGGTATAAATGCACCTTCATCATCATTTTAGTCCAA
GCGCTTCTCTTCGGTCAAAGGAGAGAAATTGGATGTAATAGAAAACCAAC
TGAGCTCTGGTTACGGAAAGTGTTTTAGCCTTGATTAGTTCGTTGAAAAG
TTCAAGAAAAGACGACTCGTCCTAAAAATTGACTGGCTCCTATATGTATA
TGCTATGATCATAAAAGTAGATTTACGTTTTTCGTTTTTGGCAAATTGCT
CTCTAAACTTTCGGTGTGAAGTGACTTTATATCAATAATGTTAAGttgtt
tcaataaaatttgGTAGAGCTTTGAGAAAAGcagattaaatttcttattt
tcttgcATTCAGGGTTTCATCTAATGATCGGTTATATCATTAGAATTGCT
AGGAAATTCTTAGCAAAAAAATATAGGTATCTTTTTGTCTGAGCTAGGTG
TTCTCAGAATATAAGCCCCTAAAATTTAGGTATAGATaattaaactgaaa
ataaaagaatttcgtCATATCACGCTAGCtatgcagatttttttgaagaa
atccattaaccaaaacattaattttaaattctgtttcttttccaaagaaa
tcaaaaggCAGCACACCAGTGGCAACCAAAACTACCAAACGTGCATCGAC
AGCTTCTTTCAAAGTAGACAAAGAAGTGACCTTCAATTTCACATCAAAGC
TGAAATCACCCAAACCTGTACTTAAAGAGTCTAATCTTAACAAGAGTGCA
ATCTCCTCCTCCTACATCAAACCCACAAGAAAATCCTTCAAAAATGTCTC
CATTCTCGACACCAAGTAAgactttttgttaattgtgaATTGTTTGCGAN
CTCCTACATCAAACCCACAAGAAAATCCTTCAAAAATGTCTCCATTCTCG
ACACCAAGTAAgactttttgttaattgtgaATTGTTTGCGAAGGTATTTG
CGAGGTATTCTATAACTTGTCTTCCTTGTATGTTAAAGTTTTGTTGGCCC
ATTTACGCCTTCTCACTTTCATCTCTTAGATCACCTAATGTAAAAACAAC
TTGCTCGTCGTCTGCAACGAAGAAAACACCTGCGAAGTTTGATCTTCAAG
CTTCTTTGAAGAAGAGGCTGTCTTACAAGCCGCACTCTGGAAAACTGAAG
GGTTCTTACTTTGCTGATAAGTCGTCAGCAGGAGCTAACACCACTTTCAA
CGCCAATTCTACTTTTACGCTTTCCCCAAGGAAAGATGTCAAGCAATTGA
GTAAACCAAAAGCCAAAGCCAAGaggtaatattttttttttctcttttac
agTGTCCAAAGATCTATACCGATATTGAGGTACCTTCCCCTCGTGTACAT
TATtgtatatttaaattttaaattattcattttttgttCTCTTTGCAGGG
AGAATCGACGTAACGAAGCTN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031063XLOC_031063Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048876-exon-scaffold_148-1491911889:20080..20114TCONS_00048876-exon-scaffold_148-1491911889:20080..20114Clytia hemisphaericaexon
TCONS_00048876-exon-scaffold_148-1510915933:20080..20114TCONS_00048876-exon-scaffold_148-1510915933:20080..20114Clytia hemisphaericaexon
TCONS_00048876-exon-scaffold_148-1575043694:20080..20114TCONS_00048876-exon-scaffold_148-1575043694:20080..20114Clytia hemisphaericaexon
TCONS_00048876-exon-scaffold_148-1491911889:20528..20584TCONS_00048876-exon-scaffold_148-1491911889:20528..20584Clytia hemisphaericaexon
TCONS_00048876-exon-scaffold_148-1510915933:20528..20584TCONS_00048876-exon-scaffold_148-1510915933:20528..20584Clytia hemisphaericaexon
TCONS_00048876-exon-scaffold_148-1575043694:20528..20584TCONS_00048876-exon-scaffold_148-1575043694:20528..20584Clytia hemisphaericaexon
TCONS_00048876-exon-scaffold_148-1491911889:21349..21391TCONS_00048876-exon-scaffold_148-1491911889:21349..21391Clytia hemisphaericaexon
TCONS_00048876-exon-scaffold_148-1510915933:21349..21391TCONS_00048876-exon-scaffold_148-1510915933:21349..21391Clytia hemisphaericaexon
TCONS_00048876-exon-scaffold_148-1575043694:21349..21391TCONS_00048876-exon-scaffold_148-1575043694:21349..21391Clytia hemisphaericaexon
TCONS_00048876-exon-scaffold_148-1491911889:21610..21688TCONS_00048876-exon-scaffold_148-1491911889:21610..21688Clytia hemisphaericaexon
TCONS_00048876-exon-scaffold_148-1510915933:21610..21688TCONS_00048876-exon-scaffold_148-1510915933:21610..21688Clytia hemisphaericaexon
TCONS_00048876-exon-scaffold_148-1575043694:21610..21688TCONS_00048876-exon-scaffold_148-1575043694:21610..21688Clytia hemisphaericaexon
TCONS_00048876-exon-scaffold_148-1491911889:22565..22645TCONS_00048876-exon-scaffold_148-1491911889:22565..22645Clytia hemisphaericaexon
TCONS_00048876-exon-scaffold_148-1510915933:22565..22645TCONS_00048876-exon-scaffold_148-1510915933:22565..22645Clytia hemisphaericaexon
TCONS_00048876-exon-scaffold_148-1575043694:22565..22645TCONS_00048876-exon-scaffold_148-1575043694:22565..22645Clytia hemisphaericaexon
TCONS_00048876-exon-scaffold_148-1491911889:23227..23444TCONS_00048876-exon-scaffold_148-1491911889:23227..23444Clytia hemisphaericaexon
TCONS_00048876-exon-scaffold_148-1510915933:23227..23444TCONS_00048876-exon-scaffold_148-1510915933:23227..23444Clytia hemisphaericaexon
TCONS_00048876-exon-scaffold_148-1575043694:23227..23444TCONS_00048876-exon-scaffold_148-1575043694:23227..23444Clytia hemisphaericaexon
TCONS_00048876-exon-scaffold_148-1491911889:23659..23904TCONS_00048876-exon-scaffold_148-1491911889:23659..23904Clytia hemisphaericaexon
TCONS_00048876-exon-scaffold_148-1510915933:23659..23904TCONS_00048876-exon-scaffold_148-1510915933:23659..23904Clytia hemisphaericaexon
TCONS_00048876-exon-scaffold_148-1575043694:23659..23904TCONS_00048876-exon-scaffold_148-1575043694:23659..23904Clytia hemisphaericaexon
TCONS_00048876-exon-scaffold_148-1491911889:24028..24050TCONS_00048876-exon-scaffold_148-1491911889:24028..24050Clytia hemisphaericaexon
TCONS_00048876-exon-scaffold_148-1510915933:24028..24050TCONS_00048876-exon-scaffold_148-1510915933:24028..24050Clytia hemisphaericaexon
TCONS_00048876-exon-scaffold_148-1575043694:24028..24050TCONS_00048876-exon-scaffold_148-1575043694:24028..24050Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_148supercontigscaffold_148:20080..24050 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.217852	1.49149	0	0.273952	72.4135	35.6452	1.12968	18.2505	21.7891	5.91479	3.02518	2.72963	7.64813	0.293364	18.034	11.4175	27.2135	18.417	3.7176	11.7106	3.9825	2.13565	0.691329	4.28229	27.0086	12.3103	4.39126	0	4.04549	4.8201
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048876 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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