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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048596 ID=TCONS_00048596|Name=TCONS_00048596|organism=Clytia hemisphaerica|type=transcript|length=1175bpRun BLAST on NCBI protein sequence of TCONS_00048596-protein >TCONS_00048596-protein ID=TCONS_00048596-protein|Name=TCONS_00048596-protein|organism=Clytia hemisphaerica|type=polypeptide|length=314bp MAGQVKYDILPFIDTSGKDSFEAGGNTSNGSQDVKTENKTATKSEDIESTRun BLAST on NCBI transcript from alignment at scaffold_144:3731..60796- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00048596 ID=TCONS_00048596|Name=TCONS_00048596|organism=Clytia hemisphaerica|type=transcript|length=57066bp|location=Sequence derived from alignment at scaffold_144:3731..60796- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_144:3731..60796- >TCONS_00048596 ID=TCONS_00048596|Name=TCONS_00048596|organism=Clytia hemisphaerica|type=CDS|length=13230bp|location=Sequence derived from alignment at scaffold_144:3731..60796- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00048596 vs. Swiss-Prot (Human)
Match: DCTN2 (Dynactin subunit 2 OS=Homo sapiens GN=DCTN2 PE=1 SV=4) HSP 1 Score: 155.992 bits (393), Expect = 1.173e-42 Identity = 109/317 (34.38%), Postives = 183/317 (57.73%), Query Frame = 3
Query: 153 KYDILPFIDTSGKDSFEAGGNTSNGSQDVKTENKTATKSEDIESTRIDHA-----KSFSKFQNKYLDTSRADFSDSISLNQKTGFDLRSIYEIVGERV-VKETPQQKYQRLQSELAELSTELEQIKE-LNETKTNEQ-NPVLLAEQVKKLQTELHNLHLEKVLGPATTGTNGVEP-GTWSKQISSHLKSFNDTKSSEEGVKE------SGIVYEMYYKPEHAKFSQTSKISELENKLKAIENYVGKDTGKMQTVISDPDTQSATLMDTAAAIHAKLTLFDVSHIEIIAARLQGLLHCINEISQKKETIENVERETKV 1058
KY LP I + D +E + D+ +++ +E++ ST ++H ++ KF++K + T DFSD I ++TG++ YE++GE + VKETPQQKYQRL E+ EL+TE+E+IK + E+ T E+ PVLLA+Q+ L+ +L HLEK+LGP N +P G +K++ L++ ++K G S + YE++ +PE KFSQ +K++ELE +L +E V D + + Q A LM+T + AK++ D++ ++ + ARLQ +L +NEI++ K ++E+ + ++KV
Sbjct: 5 KYADLPGIARNEPDVYE--------TSDLPEDDQAEFDAEELTSTSVEHIIVNPNAAYDKFKDKRVGTKGLDFSDRIGKTKRTGYE-SGEYEMLGEGLGVKETPQQKYQRLLHEVQELTTEVEKIKTTVKESATEEKLTPVLLAKQLAALKQQLVASHLEKLLGP-DAAINLTDPDGALAKRLLLQLEATKNSKGGSGGKTTGTPPDSSLVTYELHSRPEQDKFSQAAKVAELEKRLTELETAVRCDQDAQNPLSAG--LQGACLMETVELLQAKVSALDLAVLDQVEARLQSVLGKVNEIAKHKASVEDADTQSKV 309 The following BLAST results are available for this feature:
BLAST of TCONS_00048596 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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