TCONS_00048534 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048534
Unique NameTCONS_00048534
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1657

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048534 ID=TCONS_00048534|Name=TCONS_00048534|organism=Clytia hemisphaerica|type=transcript|length=1657bp
tagcaaaataaaaaatgtcatcaCTTTCAAGAACCACAAATTCAGATTCA
AGAATCTATGTTGGTAATTTACCACAATTTGTGCGACAAAGAGACTTGGA
GGATCATTTTGATCGATATGGTAAGGTGAGGGGTATTGATATACACAGCA
GATTTGATCCCGCTTTCGCCTTCATTGAATTTGAAGATTCTCGGGATGCT
GATGATGCAGTATATGGAGAAGATGGCAAAAGGTTTGACGGAAACAGAAT
AAAAGTTCAATTTCCAAGAGGAACTCCAAGAGATTCATCTGGCAGAGGAA
GAGGTAGTTCCCGTGGAGGTCGAGGTCCACCTGGAGGAAGCCGTGGAGGT
CGGGGTGGTAGAGGTCCACCCTCTAGAACTGATCATCGTATCATTGTATC
TGGATTACCAAAATCAGGCAGTTGGCAAGATTTAAAAGATCACATGCGAG
AAGCTGGTGAAGTTGTTTATGCTGATGTTTATAAGGATGGCACTGCGGTC
TGTGAATTCAAAAGTTCTAGTGATATGAAATGGGCTCTCAAGAATTTAGA
CGACACAAAATTTAAATCACATGAGCTGGGAACCTCTCTCAGTTACACAA
CCACATCCATCTCATTGATGTTGGGATAATAAAACATAAACCAGACAGGA
TACAAAGGAGAAAATTTCCACAGGATCATTCCCTAAGACCTACAAGGAGC
AAGCCAAATAAACAAACCACAACCCAGATGGTCATAAAAGGAAAACCCCT
TGTCCCTCCATGAGCAAATCTGTAAAAGGCACACACCATGTGAAAagcca
gaaaaaaggaaaaccttAATGCTAGATGTGAGGTCAACTATCAATCCAAG
GAAATCCCAGAAGGCAAAAAAGAAAACCCTTAATCAAAAAGGAGCAAATA
CTTCCAAAAACCGAAAGGATTTAGCTGTAAATAAGGAAGACCTATTCCAA
AAACATCAGGAGTTGGATACTGTACATAAATAAATAGGATTAGTTTAAGA
TAAATCCACAGGAGGATAAAGCCATATTTCATTTCTTGaacGAAACTTCA
TACATTCGCATAAAACAAGACAAATCACGATCTTCAAAATCTCGAACTAG
AAGCAGATCTCCAAGAAGAAGCCGCTCACCAAGGAGAAGATCTAGATCAC
GCTCAAGATCAAAGTCACCGAAGAAAAGTAGCAGAAGCCCAAGCCGTAGC
AAAAGCCGTAGCAAGAGCAGAAGTAGAAGTCGATCACCACAAAAAAGCAA
AAGCAGAAGTCTTAGTGTAAGCCGTAGCCGTAGCAGGAGTCGCAGTCGCA
GCAGAAGTAAAAGCCAATGAGAATTGTCTTGTGAGGCACTAACGATTTTA
AAACATGCAAATAGCTGTCTATcatatgtttaaaaaaagcgAAACTTCAT
ATTTCTAGGATTTTTTTATCaggaaactttttttaaaccaaATTGTAAAG
CACTTACATgaactttttttttgcatttacttgtaacaaaaatttactgc
tttttatttaagttttcatttttatcattgtaatattttgctttttactg
tggtaattttttttatattatgctACTATAGCTAGTAGTTTTTAAGATTA
CTTTGTGACTAGATGGAATTAGACTTTGGCAtatgtataaaaatttgaaa
tacaaaC
Run BLAST on NCBI

transcript from alignment at scaffold_143:84471..89233-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048534 ID=TCONS_00048534|Name=TCONS_00048534|organism=Clytia hemisphaerica|type=transcript|length=4763bp|location=Sequence derived from alignment at scaffold_143:84471..89233- (Clytia hemisphaerica)
TAGCAAAATAAAAAATGTCATCACTTTCAAGAACCACAAATTCAGATTCA
AGAATCTATGTTGGTAATTTACCACAATTTGTGCGACAAAGAGACTTGGA
GGATCATTTTGATCGATATGGTAAGGTGAGGGGTATTGATATACACAGCA
GATTTGATCCCGCTTTCGCCTTCATTGAATTTGAAGATTCTCGGTAAGTA
TATTGCTCTCTCAAGGCTTACAAGAAATACTTGCATTATTTCATTTACCT
CAATGTGCATTTTTTCCATGAGCTTTCGCTTTGGTTTGTGCAATCTGTTT
TTTAAACTACTTTCATGCAATACATTGGGCTAATTATTACATGGATATAC
TGGGATATAGGCTTACATAGCATCAAGCTGCCTGTCATTAAAGAAGATTA
ATTGTGACATAAAGAAGCTCTATTTGCATAGAAAATCTAGGGGATTAAAT
AATATTGGCTGGGTAGTTCAACTCAATGAGGACACTATACTTTGTTGAAG
ATGTTACCCTTTTCGAAGGAATATAACAACCTTATTGCAAAGCTCAAAAA
CTGATCATCTTTTATTTCAAAATTGAGATGCTCTTTTTCTTAGAAAACAT
TTGGAATTTATCCTTTTTTGCTAAATTTATTTATTCTGAATATTTTTTAT
TCAGGGATGCTGATGATGCAGTATATGGAGAAGATGGCAAAAGGTTTGAC
GGAAACAGAATAAAAGTTCAATTTCCAAGAGGAACTCCAAGAGATTCATC
TGGCAGAGGAAGAGGTAGTTCCCGTGGAGGTCGAGGTCCACCTGGAGGAA
GCCGTGGAGGTCGGGGTGGTAGAGGTCCACCCTCTAGAACTGATCATCGT
ATCATTGTATCTGGATTACCAAAATCAGGCAGTTGGCAAGATTTAAAAGA
TCACATGCGAGAAGCTGGTGAAGTTGTTTATGCTGATGTTTATAAGGATG
GCACTGCGGTCTGTGAATTCAAAAGTTCTAGTGATATGAAATGGGCTCTC
AAGAATTTAGACGACACAAAATTTAAATCACATGAGGTATTTACACATTG
ATTGTATCAGCTCATTTTCTTTTAGGTTCTTACATTAGTTTCCATTCCAT
TCTCATAAAAGAAGTATTTACTACCTAGGCTTTAAATTCCTCCTCATTTA
ATTTACTTACCTTTTANCTAGGGGCTAAAAAATCTGAAAATTTTCTGACC
CTCGGCCCCAACCATGGTGGGGCCTACAGGTGTCACTGTATACCAAATTA
CTTTAGGTGTACAAACTTTCGCGAGCAGAAACTTTCGCAATTTTCGCGAA
TTTTGGCCCTTTTCGCGAAAGTAAATGTATTCAAAAATTCTAGGAAGGAC
CATTCGCGAAAGTTTATGCTCGCGAAAAATTCTTGACAAAATAGATAATT
TGTAAATCTTCAAACTTTGACTATAAGACTAATAAGTCAAAGGACAAATG
TTTTAAGCCAATCCAAGAAGTATTTGTCCCTCTAAGCCATTTTTGCATGT
GAAAATTCTCTATTCTACGTCTTGATTCGCGAAAGTTTATGCTCGCGAAA
TATATTTTCATTCAATTCGCGAAAGTAAATGTCGTGAATTTCGCGATTTT
TCGTCCTCGCGAAAGTTTCTGCTCGCGAAAGTCGAATCTTATGCAGAACG
ACAGTACAACATAAAGCAAAAAGTGGAAACTGATGGCTCACGTATTCAAA
ATTGAATGTCTTTTGTGTTGTGATGCTTTTAAAGTGTGCTGATTATCTCA
TTGTTCAAATTGTTATCTTAGCAAAATAAAAAATGTCGTCACTTTCAAGA
ACCACAAATTCAGATTCAAGAATCTATGTTGGTAATTTACCACAATTTGT
GCGTCAAAGAGACTTGGAGGACCATTTTGATCGATATGGTAAGGTGAGGG
GTATTGATATACACAGCAGATTTGATCCCGCTTTCGCCTTCATTGAATTT
GAAGATTCTCGGTAAGTATATTGCTCTCTCAAGGCTTACAAGAAATACTT
GCATTATTTCATTTACCTCAATGTGCATTTTTTCCATGAGCTTTCGCTTT
GGTTTTTGCAATCTGTTTTTTAAACTACTTTCATGCAATACATTGGGCTA
ATTATTACATGGATATACTGGGATATAGGCTTACATAGCATCAAGCTGCC
TGTCATTAAAGAAGATTAATTGTGACATAAAGAAGCTCTATTTGCATAGA
AAATCTAGGGGATTAAATAATATTGGCTGGGTAGTTCAACTCAATGAGGA
CACTATACTTTGTTGAAGATGTTACCCTTTTCGAAGGAATATAACAACCT
TATTGCAAAGCTCAAAAACTGATCATCTTTTATTTCAAAATTGAGATGCT
CTTTTTCTTAGAAAACATTTGGAATTTATCCTTTTTTGCTAAATTTATTT
ATTCTGAATATTTTTTATTCAGGGATGCTGATGATGCAGTATATGGAGAA
GATGGCAAAAGGTTTGACGGAAACAGAATAAAAGTTCAATTTCCAAGAGG
AACTCCAAGAGATTCATCTGGCAGAGGAAGAGGTAGTTCCCGTGGAGGTC
GAGGTCCACCTGGAGGAAGCCGTGGAGGTCGGGGTGGTAGAGGTCCACCC
TCTAGAACTGATCATCGTATCATTGTATCTGGATTACCAAAATCAGGCAG
TTGGCAAGATTTAAAAGATCACATGCGAGAAGCTGGTGAAGTTGTTTATG
CTGATGTTTATAAGGATGGCACTGCGGTCTGTGAATTCAAAAGTTCTAGC
GATATGAAATGGGCTCTCAAGAACTTAGACGACACAAAATTTAAATCACA
TGAGGTATTTACACATTGATTGTATCAGCTCATTTTCTTTTTGGTTCTTA
CATTAGTTTCCATTCCATTCTCATAAAAGAAGTATTTACTACCTAGGCTT
TAAATTCCTCCTCATTTAATTTACTTACCTTTTATAAACACTTTAGAAAA
TCCATTATAGTAAATTCATGTTTATCAAACCAAACCATGTGAAGATGATG
AACAATATAAATTAGGCTGACATATTCTGTAATAGATGATACAATCAAGC
TAGACTATTATTATTTTCCAAATTAAAACAGAAAACTTTTTTATTTTGTT
ACTAGCTGGGAACCTCTCTCAGTTACACAACCACATCCATCTCATTGATG
TTGGGATAATAAAACATAAACCAGACAGGATACAAAGGAGAAAATTTCCA
CAGGATCATTCCCTAAGACCTACAAGGAGCAAGCCAAATAAACAAACCAC
AACCCAGATGGTCATAAAAGGAAAACCCCTTGTCCCTCCATGAGCAAATC
TGTAAAAGGCACACACCATGTGAAAAGCCAGAAAAAAGGAAAACCTTAAT
GCTAGATGTGAGGTCAACTATCAATCCAAGGAAATCCCAGAAGGCAAAAA
AGAAAACCCTTAATCAAAAAGGAGCAAATACTTCCAAAAACCGAAAGGAT
TTAGCTGTAAATAAGGAAGACCTATTCCAAAAACATCAGGAGTTGGATAC
TGTACATAAATAAATAGGATTAGTTTAAGATAAATCCACAGGAGGATAAA
GCCATATTTCATTTCTTGGTAAAACTGTTTTATATATTTTTAACATTGAT
TTTTTAAATTTAGAAAATATGATCTTCTTAAGTCTTAAGATTCTATATTG
ATTAAACTCAAATTAAAATCTTCTTTTTTTTAAAACACATAGTTGCTATA
CTACCTTTTTTTAAATCAATGATTTTGAAATTAAAATTCTGTAGTTAATT
TACTATGAAGAATTTGTAGCCTTTAGGAACTTTTAGCAATTTAACGTTGT
TTATTTCATTTTCAGAACGAAACTTCATACATTCGCATAAAACAAGACAA
ATCACGATCTTCAAAATCTCGAACTAGAAGCAGATCTCCAAGAAGGTAAA
AATAATTTAGTAATATAGTGTTTTCAAAGTTTTCAAAGTTGTTTTCTTCT
CATAGACAGCCAAAAAAGGCAAATTCATTTATCGAAAGTCTCACGCTCAG
TCAGCTAATAATAAAATGTCTACATCATTGAAGCTTACAATATAAATTTG
AAAATATTCCTTTTTCTATAAATAGGTTGGGAAATAATTAGTTTATCTAG
CAAGGTCAGTGAAAACTTGTTGGTGTTGACACAATGTCGGTGTTAAAGTA
TTAATTAAAAAAGTAAGTAACTTTAAAAAGTTAATCTCTTTTGAAAATGT
AATAAAGATGATTATTCTTTTTAGAAGCCGCTCACCAAGGAGAAGATCTA
GATCACGCTCAAGATCAAAGTCACCGAAGAAAAGTAGCAGAAGCCCAAGC
CGTAGCAAAAGCCGTAGCAAGAGCAGAAGTAGAAGTCGATCACCACAAAA
AAGCAAAAGCAGAAGTCTTAGTGTAAGCCGTAGCCGTAGCAGGAGTCGCA
GTCGCAGCAGAAGTAAAAGCCAATGAGAATTGTCTTGTGAGGCACTAACG
ATTTTAAAACATGCAAATAGCTGTCTATCATATGTTTAAAAAAAGCGAAA
CTTCATATTTCTAGGATTTTTTTATCAGGAAACTTTTTTTAAACCAAATT
GTAAAGCACTTACATGAACTTTTTTTTTGCATTTACTTGTAACAAAAATT
TACTGCTTTTTATTTAAGTTTTCATTTTTATCATTGTAATATTTTGCTTT
TTACTGTGGTAATTTTTTTTATATTATGCTACTATAGCTAGTAGTTTTTA
AGATTACTTTGTGACTAGATGGAATTAGACTTTGGCATATGTATAAAAAT
TTGAAATACAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030861XLOC_030861Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048534-exon-scaffold_143-1575043694:89041..89233TCONS_00048534-exon-scaffold_143-1575043694:89041..89233Clytia hemisphaericaexon
TCONS_00048534-exon-scaffold_143-1575043694:88198..88579TCONS_00048534-exon-scaffold_143-1575043694:88198..88579Clytia hemisphaericaexon
TCONS_00048534-exon-scaffold_143-1575043694:85666..86128TCONS_00048534-exon-scaffold_143-1575043694:85666..86128Clytia hemisphaericaexon
TCONS_00048534-exon-scaffold_143-1575043694:85339..85418TCONS_00048534-exon-scaffold_143-1575043694:85339..85418Clytia hemisphaericaexon
TCONS_00048534-exon-scaffold_143-1575043694:84471..85009TCONS_00048534-exon-scaffold_143-1575043694:84471..85009Clytia hemisphaericaexon
TCONS_00048534-exon-scaffold_143-1510915933:89041..89233TCONS_00048534-exon-scaffold_143-1510915933:89041..89233Clytia hemisphaericaexon
TCONS_00048534-exon-scaffold_143-1510915933:88198..88579TCONS_00048534-exon-scaffold_143-1510915933:88198..88579Clytia hemisphaericaexon
TCONS_00048534-exon-scaffold_143-1510915933:85666..86128TCONS_00048534-exon-scaffold_143-1510915933:85666..86128Clytia hemisphaericaexon
TCONS_00048534-exon-scaffold_143-1510915933:85339..85418TCONS_00048534-exon-scaffold_143-1510915933:85339..85418Clytia hemisphaericaexon
TCONS_00048534-exon-scaffold_143-1510915933:84471..85009TCONS_00048534-exon-scaffold_143-1510915933:84471..85009Clytia hemisphaericaexon
TCONS_00048534-exon-scaffold_143-1491911889:89041..89233TCONS_00048534-exon-scaffold_143-1491911889:89041..89233Clytia hemisphaericaexon
TCONS_00048534-exon-scaffold_143-1491911889:88198..88579TCONS_00048534-exon-scaffold_143-1491911889:88198..88579Clytia hemisphaericaexon
TCONS_00048534-exon-scaffold_143-1491911889:85666..86128TCONS_00048534-exon-scaffold_143-1491911889:85666..86128Clytia hemisphaericaexon
TCONS_00048534-exon-scaffold_143-1491911889:85339..85418TCONS_00048534-exon-scaffold_143-1491911889:85339..85418Clytia hemisphaericaexon
TCONS_00048534-exon-scaffold_143-1491911889:84471..85009TCONS_00048534-exon-scaffold_143-1491911889:84471..85009Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_143supercontigscaffold_143:84471..89233 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
10.705	12.9859	3.47181	3.60523	1.22425	0.92258	0.931547	4.74922	2.13815	3.54454	12.0164	6.1707	8.09911	9.89885	10.2696	8.60652	10.9759	16.2558	4.71078	6.18435	7.28346	7.72809	17.9812	17.7592	13.8819	16.0799	4.23302	3.22731	13.1334	14.2372
Blast
[Close]
BLAST of TCONS_00048534 vs. Swiss-Prot (Human)
Match: SRSF1 (Serine/arginine-rich splicing factor 1 OS=Homo sapiens GN=SRSF1 PE=1 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 1.550e-47
Identity = 96/180 (53.33%), Postives = 120/180 (66.67%), Query Frame = 3 
Query:   39 NSDSRIYVGNLPQFVRQRDLEDHFDRYGKVRGIDIHSR-FDPAFAFIEFEDSRDADDAVYGEDGKRFDGNRIKVQFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHRIIVSGLPKSGSWQDLKDHMREAGEVVYADVYKDGTAVCEFKSSSDMKWALKNLDDTKFKSHE 575
            N+D RIYVGNLP  +R +D+ED F +YG +R ID+ +R   P FAF+EFED RDA+DAVYG DG  +DG R++V+FPR       G G G   G      G    R          +R++VSGLP SGSWQDLKDHMREAG+V YADVY+DGT V EF    DM +A++ LD+TKF+SHE
Sbjct:   13 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGRGTGRGGGGGGGGGAPRGRYGPPSRRSE--------NRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFRSHE 184
The following BLAST results are available for this feature:
BLAST of TCONS_00048534 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SRSF11.550e-4753.33Serine/arginine-rich splicing factor 1 OS=Homo sap... [more]
back to top