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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048486 ID=TCONS_00048486|Name=TCONS_00048486|organism=Clytia hemisphaerica|type=transcript|length=646bp
CGCCTGAATGAATTGTGTATTTGATTCTTAAGAATACATTTTCTTCACAG
AATACATTTTCCTCACGTGGTTGTATTGTTGGGTCCAGTCTCTTTCACAG
AGAAAGTATTCATACTGAACGacctcaaattcataacacgcCCACATCCA
AATAATCTCAAAACACTTCTTCTCACAGATCCCAATCGAATACAGTATAA
AATAGGGTTCAAAACACATGTCATCATAGCAATATATTCAGCCCAGGTGT
CAAAATAAGTGTTAAATTCAGGTGTAATAGGTACTACCATGGTGTATACG
GACATTACGATATACGGGAGATAACATAGCCCGAATGAAATCAAAACAGA
AGTCGTCAGCCGTAAAGTTTTCTTTGTTATCTTATTGCACGAAAGTGTTG
TATTGCTTTTCGAACGTTCCCGGATATGACGGCTTTCCTTACAAATGAAA
TAATGtagaaataaaatcaaaatatagcaTAAGAAACCAAATCCACTGGC
CGATGTTCGAAATGTCGACCACCATGTAGGAATGACAAAAAGAGCTGTGA
TTGTGGATAACGCCCAAAACACATTGATGGACACTAAGATCGGTAATGTG
AATTTCTGGTTAAACTTCCTACTGTAGATGAACGGTTTAAGGATCG Run BLAST on NCBI protein sequence of TCONS_00048486-protein >TCONS_00048486-protein ID=TCONS_00048486-protein|Name=TCONS_00048486-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
ILKPFIYSRKFNQKFTLPILVSINVFWALSTITALFVIPTWWSTFRTSAS
GFGFLCYILILFLHYFICKESRHIRERSKSNTTLSCNKITKKTLRLTTSV
LISFGLCYLPYIVMSVYTMVVPITPEFNTYFDTWAEYIAMMTCVLNPILY
CIRLGSVRRSVLRLFGCGRVMNLRSFSMNTFSVKETGPNNTTT Run BLAST on NCBI transcript from alignment at scaffold_142:919164..919809 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048486 ID=TCONS_00048486|Name=TCONS_00048486|organism=Clytia hemisphaerica|type=transcript|length=646bp|location=Sequence derived from alignment at scaffold_142:919164..919809 (Clytia hemisphaerica)
CGATCCTTAAACCGTTCATCTACAGTAGGAAGTTTAACCAGAAATTCACA
TTACCGATCTTAGTGTCCATCAATGTGTTTTGGGCGTTATCCACAATCAC
AGCTCTTTTTGTCATTCCTACATGGTGGTCGACATTTCGAACATCGGCCA
GTGGATTTGGTTTCTTAtgctatattttgattttatttctaCATTATTTC
ATTTGTAAGGAAAGCCGTCATATCCGGGAACGTTCGAAAAGCAATACAAC
ACTTTCGTGCAATAAGATAACAAAGAAAACTTTACGGCTGACGACTTCTG
TTTTGATTTCATTCGGGCTATGTTATCTCCCGTATATCGTAATGTCCGTA
TACACCATGGTAGTACCTATTACACCTGAATTTAACACTTATTTTGACAC
CTGGGCTGAATATATTGCTATGATGACATGTGTTTTGAACCCTATTTTAT
ACTGTATTCGATTGGGATCTGTGAGAAGAAGTGTTTTGAGATTATTTGGA
TGTGGgcgtgttatgaatttgaggtCGTTCAGTATGAATACTTTCTCTGT
GAAAGAGACTGGACCCAACAATACAACCACGTGAGGAAAATGTATTCTGT
GAAGAAAATGTATTCTTAAGAATCAAATACACAATTCATTCAGGCG Coding sequence (CDS) from alignment at scaffold_142:919164..919809 >TCONS_00048486 ID=TCONS_00048486|Name=TCONS_00048486|organism=Clytia hemisphaerica|type=CDS|length=582bp|location=Sequence derived from alignment at scaffold_142:919164..919809 (Clytia hemisphaerica)
ATCCTTAAACCGTTCATCTACAGTAGGAAGTTTAACCAGAAATTCACATT
ACCGATCTTAGTGTCCATCAATGTGTTTTGGGCGTTATCCACAATCACAG
CTCTTTTTGTCATTCCTACATGGTGGTCGACATTTCGAACATCGGCCAGT
GGATTTGGTTTCTTAtgctatattttgattttatttctaCATTATTTCAT
TTGTAAGGAAAGCCGTCATATCCGGGAACGTTCGAAAAGCAATACAACAC
TTTCGTGCAATAAGATAACAAAGAAAACTTTACGGCTGACGACTTCTGTT
TTGATTTCATTCGGGCTATGTTATCTCCCGTATATCGTAATGTCCGTATA
CACCATGGTAGTACCTATTACACCTGAATTTAACACTTATTTTGACACCT
GGGCTGAATATATTGCTATGATGACATGTGTTTTGAACCCTATTTTATAC
TGTATTCGATTGGGATCTGTGAGAAGAAGTGTTTTGAGATTATTTGGATG
TGGgcgtgttatgaatttgaggtCGTTCAGTATGAATACTTTCTCTGTGA
AAGAGACTGGACCCAACAATACAACCACGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048486-exon-scaffold_142-1491911889:919164..919809 | TCONS_00048486-exon-scaffold_142-1491911889:919164..919809 | Clytia hemisphaerica | exon |
| TCONS_00048486-exon-scaffold_142-1510915933:919164..919809 | TCONS_00048486-exon-scaffold_142-1510915933:919164..919809 | Clytia hemisphaerica | exon |
| TCONS_00048486-exon-scaffold_142-1575043694:919164..919809 | TCONS_00048486-exon-scaffold_142-1575043694:919164..919809 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_142 | supercontig | scaffold_142:919164..919809 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0007186 | G-protein coupled receptor signaling pathway |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0004930 | G-protein coupled receptor activity |
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0016021 | integral component of membrane |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0007186 |
G-protein coupled receptor signaling pathway |
| cellular_component |
GO:0016021 |
integral component of membrane |
| molecular_function |
GO:0004930 |
G-protein coupled receptor activity |
Blast
The following BLAST results are available for this feature:
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