TCONS_00048486 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048486
Unique NameTCONS_00048486
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length646

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048486 ID=TCONS_00048486|Name=TCONS_00048486|organism=Clytia hemisphaerica|type=transcript|length=646bp
CGCCTGAATGAATTGTGTATTTGATTCTTAAGAATACATTTTCTTCACAG
AATACATTTTCCTCACGTGGTTGTATTGTTGGGTCCAGTCTCTTTCACAG
AGAAAGTATTCATACTGAACGacctcaaattcataacacgcCCACATCCA
AATAATCTCAAAACACTTCTTCTCACAGATCCCAATCGAATACAGTATAA
AATAGGGTTCAAAACACATGTCATCATAGCAATATATTCAGCCCAGGTGT
CAAAATAAGTGTTAAATTCAGGTGTAATAGGTACTACCATGGTGTATACG
GACATTACGATATACGGGAGATAACATAGCCCGAATGAAATCAAAACAGA
AGTCGTCAGCCGTAAAGTTTTCTTTGTTATCTTATTGCACGAAAGTGTTG
TATTGCTTTTCGAACGTTCCCGGATATGACGGCTTTCCTTACAAATGAAA
TAATGtagaaataaaatcaaaatatagcaTAAGAAACCAAATCCACTGGC
CGATGTTCGAAATGTCGACCACCATGTAGGAATGACAAAAAGAGCTGTGA
TTGTGGATAACGCCCAAAACACATTGATGGACACTAAGATCGGTAATGTG
AATTTCTGGTTAAACTTCCTACTGTAGATGAACGGTTTAAGGATCG
Run BLAST on NCBI

protein sequence of TCONS_00048486-protein

>TCONS_00048486-protein ID=TCONS_00048486-protein|Name=TCONS_00048486-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
ILKPFIYSRKFNQKFTLPILVSINVFWALSTITALFVIPTWWSTFRTSAS
GFGFLCYILILFLHYFICKESRHIRERSKSNTTLSCNKITKKTLRLTTSV
LISFGLCYLPYIVMSVYTMVVPITPEFNTYFDTWAEYIAMMTCVLNPILY
CIRLGSVRRSVLRLFGCGRVMNLRSFSMNTFSVKETGPNNTTT
Run BLAST on NCBI

transcript from alignment at scaffold_142:919164..919809

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048486 ID=TCONS_00048486|Name=TCONS_00048486|organism=Clytia hemisphaerica|type=transcript|length=646bp|location=Sequence derived from alignment at scaffold_142:919164..919809 (Clytia hemisphaerica)
CGATCCTTAAACCGTTCATCTACAGTAGGAAGTTTAACCAGAAATTCACA
TTACCGATCTTAGTGTCCATCAATGTGTTTTGGGCGTTATCCACAATCAC
AGCTCTTTTTGTCATTCCTACATGGTGGTCGACATTTCGAACATCGGCCA
GTGGATTTGGTTTCTTAtgctatattttgattttatttctaCATTATTTC
ATTTGTAAGGAAAGCCGTCATATCCGGGAACGTTCGAAAAGCAATACAAC
ACTTTCGTGCAATAAGATAACAAAGAAAACTTTACGGCTGACGACTTCTG
TTTTGATTTCATTCGGGCTATGTTATCTCCCGTATATCGTAATGTCCGTA
TACACCATGGTAGTACCTATTACACCTGAATTTAACACTTATTTTGACAC
CTGGGCTGAATATATTGCTATGATGACATGTGTTTTGAACCCTATTTTAT
ACTGTATTCGATTGGGATCTGTGAGAAGAAGTGTTTTGAGATTATTTGGA
TGTGGgcgtgttatgaatttgaggtCGTTCAGTATGAATACTTTCTCTGT
GAAAGAGACTGGACCCAACAATACAACCACGTGAGGAAAATGTATTCTGT
GAAGAAAATGTATTCTTAAGAATCAAATACACAATTCATTCAGGCG

Coding sequence (CDS) from alignment at scaffold_142:919164..919809

>TCONS_00048486 ID=TCONS_00048486|Name=TCONS_00048486|organism=Clytia hemisphaerica|type=CDS|length=582bp|location=Sequence derived from alignment at scaffold_142:919164..919809 (Clytia hemisphaerica)
ATCCTTAAACCGTTCATCTACAGTAGGAAGTTTAACCAGAAATTCACATT
ACCGATCTTAGTGTCCATCAATGTGTTTTGGGCGTTATCCACAATCACAG
CTCTTTTTGTCATTCCTACATGGTGGTCGACATTTCGAACATCGGCCAGT
GGATTTGGTTTCTTAtgctatattttgattttatttctaCATTATTTCAT
TTGTAAGGAAAGCCGTCATATCCGGGAACGTTCGAAAAGCAATACAACAC
TTTCGTGCAATAAGATAACAAAGAAAACTTTACGGCTGACGACTTCTGTT
TTGATTTCATTCGGGCTATGTTATCTCCCGTATATCGTAATGTCCGTATA
CACCATGGTAGTACCTATTACACCTGAATTTAACACTTATTTTGACACCT
GGGCTGAATATATTGCTATGATGACATGTGTTTTGAACCCTATTTTATAC
TGTATTCGATTGGGATCTGTGAGAAGAAGTGTTTTGAGATTATTTGGATG
TGGgcgtgttatgaatttgaggtCGTTCAGTATGAATACTTTCTCTGTGA
AAGAGACTGGACCCAACAATACAACCACGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030840XLOC_030840Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048486-proteinTCONS_00048486-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048486-exon-scaffold_142-1491911889:919164..919809TCONS_00048486-exon-scaffold_142-1491911889:919164..919809Clytia hemisphaericaexon
TCONS_00048486-exon-scaffold_142-1510915933:919164..919809TCONS_00048486-exon-scaffold_142-1510915933:919164..919809Clytia hemisphaericaexon
TCONS_00048486-exon-scaffold_142-1575043694:919164..919809TCONS_00048486-exon-scaffold_142-1575043694:919164..919809Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:919164..919809 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0.104376	0.0977154	0	0	0	0.0540686	0.917888	0	0.184398	0.148415	0.0609451	0.0624668	3.27945	2.34801	0.863434	1.26346	0.0930849	0.507766	0.958809	2.0226	0	0	0.0901088	0.0918066
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048486 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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