TCONS_00048343 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048343
Unique NameTCONS_00048343
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2181

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048343 ID=TCONS_00048343|Name=TCONS_00048343|organism=Clytia hemisphaerica|type=transcript|length=2181bp
tagcaatattttgaaacgaggtaagcgtttctcgtgacgtaatttatgaa
aaagtgtaCAAGTACAAGTGTATATTTAAAAAGTGTATATCAGCATAATT
CATCAAAGggtaattattttttcatttcatttctcacAATTTGTTTCTCC
CAGACCTCCTGTGATGCAGCTCATTATCAAAATTAACTTCCTGTTCAACA
CAGCCACCTATACATCTTTAGAAGTAGCTAACCTTGTAATACGTCTGACG
TAGTGTGACATCACTTTTAGACGTCCCTTTTCTTCCCACGCAAACATACA
AAAATTATTGTAGTCTGATTACAGTTTTATTATACTTTACAGTCTAACTC
TTAATCTCGATAGATAAAACAGTATAAGTAATGAAACCTTTTATGGTTTA
AAACTAAATTCGATGTAAGCGTGTCGTCATCACTAAACCTTGGATTGACC
TTTGTCGTAGCAACACCGAAACATCTCCGACGGAGTGCTTTTCAAAGCTT
CTCCCCACTGTTGATAACAGAAAtcgaatttttttctcattcattGAGAA
ACCATACCTTTTGTGTATGTCCCATAATATGAAGTTATATTCAAAGAGGG
ATTACCATAAACAAAATAAAGGCATTAGTTTTGATGCCACTACAATACCA
TGATCAACACAGCATGAGGTGGATACTCTCAGGGTGTTTATACTTTCTCA
TAAACACAACATTTCATTATTTATCATTTATTCGGATCTTTGTCTGATTG
TTCTTTTTTGTTATGCGAAGGAGGGAGTCCACTCACCCTTAGATATCGAT
TGGCTAACACATCATTAACGAGTCATTTTGTATCACGTCTCTTGTACACT
CTCTTTTGGTTGACGATTCAAAGGTTTTATCGAGTGTGTCATCACACTAA
ACCTTTTCATAAAGCAGTATATATAGTACACTGATCAAGAAAGGATAGAC
AAATTACTTTGATTTTCATTGCCTCAAAGTCTACAACGAATCATCGGAGA
GAAAGCTTTGAGATTTAATATTCTATTCAAACAACATTATGGCGAATCGA
CCAAAAGGATACGGTTTAAGTGCACAAATACAAAGACAGCGCACAGCCCG
CTACGATTTAGATGACGAACAAGATGCGCTGGCTTGGATGGAAGCGGTTA
TTGACGAGGGTGAAGTCTTTATAAACGTGGAAGGAATGAAAGAAACTACT
GAAGCTTTGAGAGATGGAGTTTACTTATGTAAATTAATGGCTGCACTGAA
CCCTAAACTTATCAAACGCATCAATAAACCAAACACGCCTTTTCGGTGCA
TGGAAAATATCGGAAATTTCTTAAACGCTTGCCGAGAATACGGACTCATT
TCTGAAGATTTGTTCATGACAAGTGACTTGTATGATGGCATCAATATTAC
AGCTGTTATTAATACCATTCATGCTTTGGGGCGTAAAGCACAAGACTGGG
ATTATGACGGACCTATACTTGGACCCAGAGAGTCGACCCGAAATCCACGT
GAGTTTACTGCGGACCAAATAAAAGAAGGGAAAAGTTTGATCGGCTTACA
AATGGGCTCCAATAAAGGGGCCACTCAAGCCGGACTTAATTTTGGGAAAA
CAAGGTCCATTTTGGACTGAAAATATATAGAGAGATTTCCAGTTTTGTAA
ATTGTTTGGATTTTAAATGTAAAGTTTGTGTTCACTTTCGCTTCACTTTT
AGTCCCAAGAATTATTTTTagtcttttgttttttaaaagttatacAAGTT
TTGATAATAATGATGatatttatgtattttttttctatttttatggtTAC
TATTGTATTGTtactaaaataataaaaaaaggaTACAATTTTTTAAAGCA
GTGTGAACGGTGTTTGTAGCTTGGTTGGTATCTTCTTGCTAGGCGCCTAA
GCAGCATGAATGTTTAGGGGAAAGCTTACTtatgagaaaaattaaaaaat
ctttcagtttacACTTTGAAAGTATTACCGCCAAAAGATAAGAATTACGa
tatatatttttaagttttatcaCAGTATTCGGATATAAAGATGTGGCTAT
GTCTTAAATTACAAAAGAAACACGGTATTTTAATTTGTTAACCAATTACT
GTAAACCACTATAGCTATGTTGAGCATCTGATAAATGTTTCTGCTCCCAT
TTTTATCACATtcttgtacacgtttttttat
Run BLAST on NCBI

protein sequence of TCONS_00048343-protein

>TCONS_00048343-protein ID=TCONS_00048343-protein|Name=TCONS_00048343-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
MANRPKGYGLSAQIQRQRTARYDLDDEQDALAWMEAVIDEGEVFINVEGM
KETTEALRDGVYLCKLMAALNPKLIKRINKPNTPFRCMENIGNFLNACRE
YGLISEDLFMTSDLYDGINITAVINTIHALGRKAQDWDYDGPILGPREST
RNPREFTADQIKEGKSLIGLQMGSNKGATQAGLNFGKTRSILD
Run BLAST on NCBI

transcript from alignment at scaffold_142:73987..76260-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048343 ID=TCONS_00048343|Name=TCONS_00048343|organism=Clytia hemisphaerica|type=transcript|length=2274bp|location=Sequence derived from alignment at scaffold_142:73987..76260- (Clytia hemisphaerica)
TAGCAATATTTTGAAACGAGGTAAGCGTTTCTCGTGACGTAATTTATGAA
AAAGTGTACAAGTACAAGTGTATATTTAAAAAGTGTATATCAGCATAATT
CATCAAAGGGTAATTATTTTTTCATTTCATTTCTCACAATTTGTTTCTCC
CAGACCTCCTGTGATGCAGCTCATTATCAAAATTAACTTCCTGTTCAACA
CAGCCACCTATACATCTTTAGAAGTAGCTAACCTTGTAATACGTCTGACG
TAGTGTGACATCACTTTTAGACGTCCCTTTTCTTCCCACGCAAACATACA
AAAATTATTGTAGTCTGATTACAGTTTTATTATACTTTACAGTCTAACTC
TTAATCTCGATAGATAAAACAGTATAAGTAATGAAACCTTTTATGGTTTA
AAACTAAATTCGATGTAAGCGTGTCGTCATCACTAAACCTTGGATTGACC
TTTGTCGTAGCAACACCGAAACATCTCCGACGGAGTGCTTTTCAAAGCTT
CTCCCCACTGTTGATAACAGAAATCGAATTTTTTTCTCATTCATTGAGAA
ACCATACCTTTTGTGTATGTCCCATAATATGAAGTTATATTCAAAGAGGG
ATTACCATAAACAAAATAAAGGCATTAGTTTTGATGCCACTACAATACCA
TGATCAACACAGCATGAGGTGGATACTCTCAGGGTGTTTATACTTTCTCA
TAAACACAACATTTCATTATTTATCATTTATTCGGATCTTTGTCTGATTG
TTCTTTTTTGTTATGCGAAGGAGGGAGTCCACTCACCCTTAGATATCGAT
TGGCTAACACATCATTAACGAGTCATTTTGTATCACGTCTCTTGTACACT
CTCTTTTGGTTGACGATTCAAAGGTTTTATCGAGTGTGTCATCACACTAA
ACCTTTTCATAAAGCAGTATATATAGTACACTGATCAAGAAAGGATAGAC
AAATTACTTTGATTTTCATTGCCTCAAAGTCTACAACGAATCATCGGAGA
GAAAGCTTTGAGATTTAATATTCTATTCAAACAACATTATGGCGAATCGA
CCAAAAGGATACGGATTAAGTGCACAAATACAAAGACAGCGCGCAGCCCG
TNGAGATTTAATATTCTATTGAAACAACATTATGGCGAATCGACCAAAAG
GATACGGTTTAAGTGCACAAATACAAAGACAGCGCACAGCCCGCTACGAT
TTAGATGACGAACAAGATGCGCTGGCTTGGATGGAAGCGGTTATTGACGA
GGGTGAAGTCTTTATAAACGTGGAAGGAATGAAAGAAACTACTGAAGCTT
TGAGAGATGGAGTTTACTTATGTAAATTAATGGCTGCACTGAACCCTAAA
CTTATCAAACGCATCAATAAACCAAACACGCCTTTTCGGTGCATGGAAAA
TATCGGAAATTTCTTAAACGCTTGCCGAGAATACGGACTCATTTCTGAAG
ATTTGTTCATGACAAGTGACTTGTATGATGGCATCAATATTACAGCTGTT
ATTAATACCATTCATGCTTTGGGGCGTAAAGCACAAGACTGGGATTATGA
CGGACCTATACTTGGACCCAGAGAGTCGACCCGAAATCCACGTGAGTTTA
CTGCGGACCAAATAAAAGAAGGGAAAAGTTTGATCGGCTTACAAATGGGC
TCCAATAAAGGGGCCACTCAAGCCGGACTTAATTTTGGGAAAACAAGGTC
CATTTTGGACTGAAAATATATAGAGAGATTTCCAGTTTTGTAAATTGTTT
GGATTTTAAATGTAAAGTTTGTGTTCACTTTCGCTTCACTTTTAGTCCCA
AGAATTATTTTTAGTCTTTTGTTTTTTAAAAGTTATACAAGTTTTGATAA
TAATGATGATATTTATGTATTTTTTTTCTATTTTTATGGTTACTATTGTA
TTGTTACTAAAATAATAAAAAAAGGATACAATTTTTTAAAGCAGTGTGAA
CGGTGTTTGTAGCTTGGTTGGTATCTTCTTGCTAGGCGCCTAAGCAGCAT
GAATGTTTAGGGGAAAGCTTACTTATGAGAAAAATTAAAAAATCTTTCAG
TTTACACTTTGAAAGTATTACCGCCAAAAGATAAGAATTACGATATATAT
TTTTAAGTTTTATCACAGTATTCGGATATAAAGATGTGGCTATGTCTTAA
ATTACAAAAGAAACACGGTATTTTAATTTGTTAACCAATTACTGTAAACC
ACTATAGCTATGTTGAGCATCTGATAAATGTTTCTGCTCCCATTTTTATC
ACATTCTTGTACACGTTTTTTTAT

Coding sequence (CDS) from alignment at scaffold_142:73987..76260-

>TCONS_00048343 ID=TCONS_00048343|Name=TCONS_00048343|organism=Clytia hemisphaerica|type=CDS|length=582bp|location=Sequence derived from alignment at scaffold_142:73987..76260- (Clytia hemisphaerica)
ATGGCGAATCGACCAAAAGGATACGGTTTAAGTGCACAAATACAAAGACA
GCGCACAGCCCGCTACGATTTAGATGACGAACAAGATGCGCTGGCTTGGA
TGGAAGCGGTTATTGACGAGGGTGAAGTCTTTATAAACGTGGAAGGAATG
AAAGAAACTACTGAAGCTTTGAGAGATGGAGTTTACTTATGTAAATTAAT
GGCTGCACTGAACCCTAAACTTATCAAACGCATCAATAAACCAAACACGC
CTTTTCGGTGCATGGAAAATATCGGAAATTTCTTAAACGCTTGCCGAGAA
TACGGACTCATTTCTGAAGATTTGTTCATGACAAGTGACTTGTATGATGG
CATCAATATTACAGCTGTTATTAATACCATTCATGCTTTGGGGCGTAAAG
CACAAGACTGGGATTATGACGGACCTATACTTGGACCCAGAGAGTCGACC
CGAAATCCACGTGAGTTTACTGCGGACCAAATAAAAGAAGGGAAAAGTTT
GATCGGCTTACAAATGGGCTCCAATAAAGGGGCCACTCAAGCCGGACTTA
ATTTTGGGAAAACAAGGTCCATTTTGGACTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030762XLOC_030762Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048343-proteinTCONS_00048343-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048343-exon-scaffold_142-1575043694:75226..76260TCONS_00048343-exon-scaffold_142-1575043694:75226..76260Clytia hemisphaericaexon
TCONS_00048343-exon-scaffold_142-1575043694:73987..75132TCONS_00048343-exon-scaffold_142-1575043694:73987..75132Clytia hemisphaericaexon
TCONS_00048343-exon-scaffold_142-1510915933:75226..76260TCONS_00048343-exon-scaffold_142-1510915933:75226..76260Clytia hemisphaericaexon
TCONS_00048343-exon-scaffold_142-1510915933:73987..75132TCONS_00048343-exon-scaffold_142-1510915933:73987..75132Clytia hemisphaericaexon
TCONS_00048343-exon-scaffold_142-1491911889:75226..76260TCONS_00048343-exon-scaffold_142-1491911889:75226..76260Clytia hemisphaericaexon
TCONS_00048343-exon-scaffold_142-1491911889:73987..75132TCONS_00048343-exon-scaffold_142-1491911889:73987..75132Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:73987..76260 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.61917	1.77192	1.71108	2.37154	3.34809	2.2431	2.9375	3.16148	1.89506	2.30978	1.43994	2.74382	7.90892	5.98926	1.2361	1.44712	9.50793	15.8638	20.0234	30.2789	12.6806	12.0903	6.91032	7.27643	5.17665	5.77505	25.8036	26.9328	31.9094	30.5372
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003096SM22_calponin
IPR001715CH-domain
IPR000557Calponin_repeat
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00048343 vs. Swiss-Prot (Human)
Match: TAGL2 (Transgelin-2 OS=Homo sapiens GN=TAGLN2 PE=1 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 1.812e-33
Identity = 79/201 (39.30%), Postives = 116/201 (57.71%), Query Frame = 1 
Query: 1039 MANRPKGYGLSAQIQRQRTARYDLDDEQDALAWMEAVIDEGEVFINVEGMKETTEALRDGVYLCKLMAALNPK---LIKRINKPNTPFRCMENIGNFLNACREYGLISEDLFMTSDLYDGINITAVINTIHALGRKAQDWDYDG-----PILGPRESTRNPREFTADQIKEGKSLIGLQMGSNKGATQAGLN-FGKTRSIL 1614
            MANR   YGLS ++Q++   +YD D EQ  + W+     + +V     G +     L+DG  LC+L+ AL P+    +K+I      F+ ME I  FL A   YG+ + D+F T DL++G N+  V  T+  LG  A   D DG     P   P++S  NPR F+ +Q++EGK++IGLQMG+N+GA+QAG+  +G  R IL
Sbjct:    1 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRK-DVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAVARD-DGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPRQIL 199
The following BLAST results are available for this feature:
BLAST of TCONS_00048343 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TAGL21.812e-3339.30Transgelin-2 OS=Homo sapiens GN=TAGLN2 PE=1 SV=3[more]
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