TCONS_00048343-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00048343-protein
Unique NameTCONS_00048343-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length193

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00048343-protein ID=TCONS_00048343-protein|Name=TCONS_00048343-protein|organism=Clytia hemisphaerica|type=polypeptide|length=193bp
MANRPKGYGLSAQIQRQRTARYDLDDEQDALAWMEAVIDEGEVFINVEGM
KETTEALRDGVYLCKLMAALNPKLIKRINKPNTPFRCMENIGNFLNACRE
YGLISEDLFMTSDLYDGINITAVINTIHALGRKAQDWDYDGPILGPREST
RNPREFTADQIKEGKSLIGLQMGSNKGATQAGLNFGKTRSILD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030762XLOC_030762Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00048343TCONS_00048343Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR003096SM22_calponin
IPR001715CH-domain
IPR000557Calponin_repeat
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR003096Smooth muscle protein/calponinPRINTSPR00888SM22CALPONINcoord: 22..35
score: 37.82
coord: 86..102
score: 48.1
coord: 123..137
score: 35.29
coord: 3..17
score: 41.18
coord: 53..68
score: 38.6
coord: 156..169
score: 42.44
coord: 169..184
score: 68.75
coord: 102..117
score: 38.6
IPR001715Calponin homology domainSMARTSM00033ch_5coord: 26..130
e-value: 6.0E-22
score: 88.9
IPR001715Calponin homology domainGENE3D1.10.418.10coord: 15..179
e-value: 9.7E-31
score: 106.0
IPR001715Calponin homology domainPFAMPF00307CHcoord: 27..135
e-value: 1.5E-19
score: 70.1
IPR001715Calponin homology domainPROSITEPS50021CHcoord: 24..134
score: 15.323
IPR001715Calponin homology domainCDDcd00014CHcoord: 25..135
e-value: 3.49456E-20
score: 80.8179
IPR001715Calponin homology domainSUPERFAMILY47576Calponin-homology domain, CH-domaincoord: 16..178
IPR000557Calponin repeatPFAMPF00402Calponincoord: 168..191
e-value: 2.5E-10
score: 39.7
IPR000557Calponin repeatPROSITEPS01052CALPONIN_1coord: 168..186
IPR000557Calponin repeatPROSITEPS51122CALPONIN_2coord: 168..192
score: 11.243

Blast
[Close]
BLAST of TCONS_00048343-protein vs. Swiss-Prot (Human)
Match: TAGL2 (Transgelin-2 OS=Homo sapiens GN=TAGLN2 PE=1 SV=3)

HSP 1 Score: 129.028 bits (323), Expect = 8.604e-38
Identity = 79/201 (39.30%), Postives = 116/201 (57.71%), Query Frame = 0 
Query:    1 MANRPKGYGLSAQIQRQRTARYDLDDEQDALAWMEAVIDEGEVFINVEGMKETTEALRDGVYLCKLMAALNPK---LIKRINKPNTPFRCMENIGNFLNACREYGLISEDLFMTSDLYDGINITAVINTIHALGRKAQDWDYDG-----PILGPRESTRNPREFTADQIKEGKSLIGLQMGSNKGATQAGLN-FGKTRSIL 192
            MANR   YGLS ++Q++   +YD D EQ  + W+     + +V     G +     L+DG  LC+L+ AL P+    +K+I      F+ ME I  FL A   YG+ + D+F T DL++G N+  V  T+  LG  A   D DG     P   P++S  NPR F+ +Q++EGK++IGLQMG+N+GA+QAG+  +G  R IL
Sbjct:    1 MANRGPAYGLSREVQQKIEKQYDADLEQILIQWITTQCRK-DVGRPQPGRENFQNWLKDGTVLCELINALYPEGQAPVKKIQASTMAFKQMEQISQFLQAAERYGINTTDIFQTVDLWEGKNMACVQRTLMNLGGLAVARD-DGLFSGDPNWFPKKSKENPRNFSDNQLQEGKNVIGLQMGTNRGASQAGMTGYGMPRQIL 199
The following BLAST results are available for this feature:
BLAST of TCONS_00048343-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TAGL28.604e-3839.30Transgelin-2 OS=Homo sapiens GN=TAGLN2 PE=1 SV=3[more]
back to top