TCONS_00048342 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00048342
Unique Name	TCONS_00048342
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	831

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_142:67010..72942-

transcript sequence

>TCONS_00048342 ID=TCONS_00048342|Name=TCONS_00048342|organism=Clytia hemisphaerica|type=transcript|length=831bp
ttttaagGATAGTAACAGAAagtaaaataatataaaaacaaatgatGACA
TCGATTGCGGTGAGAAAGCAGTTCAAGTTTCCAGTCTATTTCACAACCGA
TGTATTTCACAAAGTTTTACCATTCCACATGGCTAAAGGGATGCAAGTGA
TGAGGGGAATGGTGAACAATTGTGATTGCGTCATCGAAGTTCGTGATGCT
CGTGTTCCATTATCCAGCTGCAACAAACAGTTCGAATATCTTTATGCGCA
CAAACCTCGAATTCTACTCATTAATAAAATCGATCTGGCTAATGAAAGTC
TCACAAAGgaagtttgtgagcaaaatttgtcTCAAGAAAACATAGTCCAA
ACGTTTTACACCAATTgcaaaacgaaagaaaaagaaatcttcaCAGAGGT
GATGAGATCTTTGAAACAAATTCTTCGccaaaagaatgaacaaaaatctA
TAGCCGGTGGAAAGCCAATGAAGGCGTTGGATGACAGTTCTTTTAAAGCA
CTTGTATGCGGTNTCAGGGTGGGAAGCAAATGAAGTCTTTGGATGACAGC
TCTTTTAAAGCACTTGTATGCGGAGTTCCAAATGTTGGCAAATCTTCGTT
TATTAATGCCGCAAGACAACGTTACTTGAGAAAAGGTGGTAAAGCAACAC
CAGTTGGGCGGAAACCAGGCGTTACCAGATCTGTACTGACAAAAATTGTG
atatCGCGAAACCCAAAGATTTCCATCCTTGACACACCAGgtaTCATTTC
GCCATACTTAAAAGACCCGATGACTGGAATCAAATTGGCTTTAACGGGAA
CTTTTCCTGATCACGTAATAGGAGAAGAANC

Run BLAST on NCBI

transcript from alignment at scaffold_142:67010..72942-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00048342 ID=TCONS_00048342|Name=TCONS_00048342|organism=Clytia hemisphaerica|type=transcript|length=5933bp|location=Sequence derived from alignment at scaffold_142:67010..72942- (Clytia hemisphaerica)
TTTTAAGGATAGTAACAGAAAGTAAAATAATATAAAAACAAATGATGACA
TCGATTGCGGTGAGAAAGCAGTTCAAGTTTCCAGTCTATTTCACAACCGA
TGTATTTCACAAAGTTTTACCATTCCACATGGCTAAAGGTACTGTGGATA
TATAATTGTTTGTATGATATTTACATTGAGGAGTTTTTGCATCATTACAT
TCTCCTTCTCAAAGCCGACGGCATAGATATTTAGATATATAGATAGTTGT
TACATTAACCGATGTTAATCATGAAAGAAAGCTATGTAAGTAAAGACAAA
GGAAGCTATACACCTTTTCGACCGTAGCCGCGCCAATTGCCGTGCGGGCA
ATTTTTATCTGTTTCACCACCCTAAAACCGCCCCAGTCTTTTTTCCGCAC
CTAAAGACAATAGAAAAAGTGTAAAAAGGGTTGGATCGAGTTTAGGGTGG
TGAATTAAATAATAAAGTAGCACGCGCCTGACCAGGCGGCTACGGTTGAA
AAAGTGTATTGGGGCATAACGTGGAGCACATTCACTTTCACTGGGGAGTA
GGCTACCTTTAGTTATTATTTATAATTTACTTTTTTCTTGGTTGCCAGGG
ATGCAAGTGATGAGGGGAATGGTGAACAATTGTGATTGCGTCATCGAAGT
TCGTGATGCTCGTGTAAGTAAATTACTGTAGCGAGTTTATGTATCTGTGT
TATCCCATTTGTCTATATCCTGATTAACTGAGGATGACGGTAAATCAGCA
CTTTTACCGTCCTCCATTTTTTGGGTCAAAACTGCGGGTTATTCCAAATC
GCTACAGATACGTCTTCAAAATCCGTCTTCAAAAATGCAAATATAAAAAC
CCGCCGCTTGTGTTTTACCAACACAGTATATTAAGATCATCATATGGTGC
TAATTTAGCATTAGAATTAAATGCGTTAATATATTATTAATATGTTCGTT
GTTAAGTCGCTGAAAGTGCTCCGTTTGGTGTAAAAGTATTTGAGATTTCG
AAGAGTTCTCCGGCGAAGCCTATTTTCCGAACACCATTTTAGTAGCAGTC
TGTTTTAGCGAGGAAAATTTAGCTTCCTTGTATTGCCCCTAGAAGGATCT
CAGATTCCTCATCTGCAAGCAGGTAAAAAAGCGTAGAGGGTGTTTGAAAA
TACTCAACAGCCTGTAGTAATGTCAAAATCTTAATCTTCGAAAAACACCA
GCAAATTCAAACGATTTCTATTTCTACATTCCCATTCATCAGTTTATAGG
ATTATACATGCATTTTTTCTTTCGTGTTTAGGTTCCATTATCCAGCTGCA
ACAAACAGTTCGAATATCTTTATGCGCACAAACCTCGAATTCTACTCATT
AATAAAATCGATCTGGCTAATGAAAGTCTCACAAAGGTTAATAAATATCA
TTTTAGAATGTCTGACAAGGGTTTTCGTCGTCGGTGCATGGGATTTTTAG
GATCGCCTGTCAAGTGTGAAAGTTATTGGGGGTGATTGAAGAATTTTCCC
TACGTAGGACCCGAGTATCAGGGGCCCAGAGGGAAACCTACAACATGGAG
CTAAGTGTAATCAAAAATGACTTTAAAACTTTAAATTTGAGCTGGGATGA
GGCTATGAATCTTGCTAGAGAGAAGAAAGAATGGAAACCATCATCAATCG
CCTATAACTGGCCTCTACCCTCTCCCCTACCTCCCTCTCCNTCAAAAGTA
CAAAGACTTTGCTCAAAAAAGATTTCTAAAACTTAAAAATCAAGTTTTTA
ACTAATAGTTATGTTCTTAACAATTTTAACGATAAATTAACTTGAAAACC
GGTTTGACAACTTTTATAAGATTTTAGTTTAAAATGATAGACAAAAGATT
TAATTGATGATTAATATTTAATTGATGATTACGGAGCCACTGAACTGTAG
CATTGCTTAAAACTTCGATTTTCCTTTATGTTTTGAGGCTTGTTTTGAAA
AGTTATACTTTTGGAAAGCCTGAAAAATGCTCCATCTCACTGTGGAAGAA
TTTTCAAAATTGANGACCCGAGTATCAGGGGCCCAGAGGGAAACCTACAA
CATGGAGCTAAGTGTAATCAAAAATGACTTTAAAACTTTAAATTTGAGCT
GGGATGAGGCTATGAATCTTGCTAGAGAGAAGAAAGAATGGAAACCATCA
TCAATCGCCTATAACTGGCCTCTACCCTCTCCCCTACCTCCCTCTCCCCT
CTTCTGTCCCACTGTCCCACAGTTACAAACGAAATGATCACAGTATTCCT
TTCTCTATGTCATCAGTAGGATTTTATTTTTTGAACCTACTGGAGGTCCT
ATAAATTAACCTGTTTTCGTTCGTCTGTTACCAACTTTTCTCAGGATTGA
ATCAGAATTTTTTGATTTTTGGTACAAAGGTGCAAAATAGTGGTGGCCAA
AATGCGACGGAGCCCGATTTTCGGAAAAAAAACTTTTAGTAAATTTCAGC
CAAAAAATGGCTAAAAATAGGGTTTTTGGACTTGTTTTGTTTTATTTTTT
TTCCTCAAGTACATGATTTTGCGAAATAATACCGGTGTAGCGGATTATTT
TAACTCCCCGCAAATGTTGACCCCCCCAGTTAATATAAACTAGGAAATAA
TGACTCCCCTAGAGTAGAAATTTCCTAGGAAATATTGACTCNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCC
TGTTTTTCAGATTTTAAACCTCTTGAGAATTGCTTTAAGATGCTAAATTT
TGCTAATTCGTTACTTTTCTCGTTCAAGGCTATGAAATAAGAATTTTTCG
CAGAGCTGATTTTCGTCGTTGACACCCACCTTTTGCCGAAATTCTTTCAT
TTTTCAAGGGACTTTAAGAATTTTCAAAATGTATGGTATTCCGCTGAACA
GATTTTTCACGTAATTGTCGGTAGACACGAAGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTGAAGGAAATGCTTCCCTCAGATGGAGTAT
TTCTCTTACGGGGGTCTGTAGAGTTAGCCCTGGATAGCCAAATGAATTTT
TAAATAATTTTGTCATAGATGATAGAGGGGAGTCATTTTAAACCAAAGGG
GGTCAAGATTTCCTAGGAAATAGCAACTCTAGGGAGTCTTCATTTACTAG
TTTATTATGACCGGGGAGTCATTATTTAGGGGAGTTAATTTTTTTTGTCA
CACCGGTAATGTAATCGTTTTTTACGTTACGGGAAAACCAAATGAAATGA
ATTGGATGGACCTCATACTGTACTTTCATTTGTTTTCTAACGTTAGTGGT
CGGGGGGGGGGCACCTTAAGGTAAGTGACTCACCGCAGGTGCGCCTTCTA
GGGTACGGTATCAGGCTTCAAGTGCGTCAGGAGGTCAAAACCAAAATCCA
CAGAATCGAGTTCGACACTAATAAACTGTAACTTTTCTTTTACTGATGTT
TCTTTTCAGGAAGTTTGTGAGCAAAATTTGTCTCAAGAAAACATAGTCCA
AACGTTTTACACCAATTGCAAAACGAAAGAAAAAGAAATCTTCACAGAGG
TTTTTAAGTTGTCATTTTATGATTCCAGTCCATGAAAAATCGAAATGTAA
TAACCGCATTCTTTTTCGCCGTTCAACATATGAGTTCAGTCCATTTAATA
AGTGGGTCTTTCTCTATTTGTCTTCTCTACATCATGACATTGTTGATCGC
AGCACAATTGGTTGCACAGTCTACTGTGGTGCCAATGTAACATTTTATTT
GTAAAAATCTCAGCCCACCAGTGAACCACATTAAAGCTTATGATTCTTTG
TCAATTATGTCAACGATTAATTCATTTAGGTGATGAGATCTTTGAAACAA
ATTCTTCGCCAAAAGAATGAACAAAAATCTATAGCCGTAAGTTCGTTACG
TAAATTTTTTACGCAACAGCTTCGATATTCCGGTCACAAAATAATATTGA
AAATGAATTATTCCTTTTTGGTTATTTATGACTTTTTCCGTAACCTTTAG
ATACAGTAGAGTGTAACACAAAGATCTACGGAAAACACAAACTTGCTTGC
TTTATTGATAGTTCAAGTTATGGAAGCAAATGGTTCGTTAACTGGTGATC
GAGTAATCGAATTTCTGAAATATTTTCATTTTAACTTCATTTTTCAGGGT
GGAAAGCCAATGAAGGCGTTGGATGACAGTTCTTTTAAAGCACTTGTATG
CGGTNTCAGGGTGGGAAGCAAATGAAGTCTTTGGATGACAGCTCTTTTAA
AGCACTTGTATGCGGAGTTCCAAATGTTGGCAAATCTTCGTTTATTAATG
CCGCAAGACAACGTTACTTGAGAAAAGGTAAATTGAGAACAAACTTTACA
CGTTTTTTTTTTTAAGAAACACACTTTTAAGAAACATGAGGCTCAGAATG
CCTAAAAACTAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTA
TGTCAAAAAGTTTGGAAACATGTAAGAAACATTTAAGGCTCAAAAGGCCG
ATTTCTTAAGAAACATTGAGGCTGCTTGGTAAAACTAGTTTCTTAAAAAA
ACAATGTGTAATCCAAGGCAATTTCAATTTGTGCTACCTACATTCTGAAA
GGAATTCATGTAATGAATACTAATCTCTGTTGCTTTTTGAATTTCAAGGC
TTACAGTTTTTGACAAATCTCTCCTTCCATAAACTTTTCATAGGTGGTAA
AGCAACACCAGTTGGGCGGAAACCAGGCGTTACCAGATCTGTACTGACAA
AAATTGTGGTAAGTATTTCATCTTACGATATGTCTTTATGGTTTCTGTTT
TTGCTAGATAAATATTTTTTTATTCCAGGCATCAAGGACTTAAAAAGTTT
CATAAATCATTCTGGATACGGCAATTTTTAGTCCAATTTTCTTTTTCAGA
TATCGCGAAACCCAAAGATTTCCATCCTTGACACACCAGGTATTAAACTC
ATTCAATGAATGAATATCATTCCTTCAGATTCATTGAACGATGTTCAATA
TGGCACCACAATTCATTTAGCAATTAAATCGACGCCTTTACCAGGGTTGA
GAATCGCAATACTAATACGCTGCAGAGATTCTCGGACTGTTTATAAAAAT
ACTTATACATTGAGTATTGAAAAGTTATCTAAATTTACAAACTTCATCAT
TTTTATAATTTTTTTCAAGGTATCATTTCGCCATACTTAAAAGACCCGAT
GACTGGAATCAAATTGGCTTTAACGGGTATTTGAATTATTTGTGAAAGAA
ACTGTGGACAATATTCTTTTTATGTATTAGATGGTGTCTATTTCTCCATT
CGACAATAAGGCACTGAATATATTGTACAAATGACTTTAAATTTTACAAC
ACAGTGCTCAATACCGAGATTGACAGAGCGGACACTGGATATATATGACT
ACCTAATAATCTTACGAGGATTGTTTTTAATTCTCCTCGACTTTTTTAGG
AACTTTTCCTGATCACGTAATAGGAGAAGAANC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_030761	XLOC_030761	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_142	supercontig	scaffold_142:67010..72942 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.56346	7.55255	3.29948	2.3952	0.324214	1.01868	0.458573	0	0.335803	0.047633	1.08008	0	0.206279	0	0.0380118	0	1.6739	1.20441	0.221843	0.16441	1.15806	0.455184	5.01512	2.58393	0	2.90039	0	0	1.58481	2.58362

Blast

[Close]

BLAST of TCONS_00048342 vs. Swiss-Prot (Human)
Match: MTG1 (Mitochondrial ribosome-associated GTPase 1 OS=Homo sapiens GN=MTG1 PE=1 SV=2)

HSP 1 Score: 105.145 bits (261), Expect = 6.696e-26
Identity = 50/96 (52.08%), Postives = 74/96 (77.08%), Query Frame = 2

Query:  542 DDSSFKALVCGVPNVGKSSFINAARQRYLRKGGKATPVGRKPGVTRSVLTKIVISRNPKISILDTPGIISPYLKDPMTGIKLALTGTFPDHVIGEE 829
            ++  +  +V GVPNVGKSS IN+ R+++LRKG KAT VG +PG+TR+V++KI +S  P + +LDTPG+++P ++   TG+KLAL GT  DH++GEE
Sbjct:  140 ENLEYCIMVIGVPNVGKSSLINSLRRQHLRKG-KATRVGGEPGITRAVMSKIQVSERPLMFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEE 234

The following BLAST results are available for this feature:

BLAST of TCONS_00048342 vs. Swiss-Prot (Human)

BLAST of TCONS_00048342 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MTG1	6.696e-26	52.08	Mitochondrial ribosome-associated GTPase 1 OS=Homo...	[more]

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TCONS_00048342 (transcript) - C. hemisphaerica