TCONS_00048338 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048338
Unique NameTCONS_00048338
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2721

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048338 ID=TCONS_00048338|Name=TCONS_00048338|organism=Clytia hemisphaerica|type=transcript|length=2721bp
ttttaagGATAGTAACAGAAagtaaaataatataaaaacaaatgatGACA
TCGATTGCGGTGAGAAAGCAGTTCAAGTTTCCAGTCTATTTCACAACCGA
TGTATTTCACAAAGTTTTACCATTCCACATGGCTAAAGGGATGCAAGTGA
TGAGGGGAATGGTGAACAATTGTGATTGCGTCATCGAAGTTCGTGATGCT
CGTGTTCCATTATCCAGCTGCAACAAACAGTTCGAATATCTTTATGCGCA
CAAACCTCGAATTCTACTCATTAATAAAATCGATCTGGCTAATGAAAGTC
TCACAAAGgaagtttgtgagcaaaatttgtcTCAAGAAAACATAGTCCAA
ACGTTTTACACCAATTgcaaaacgaaagaaaaagaaatcttcaCAGAGGT
GATGAGATCTTTGAAACAAATTCTTCGccaaaagaatgaacaaaaatctA
TAGCCGGTGGGAAGCAAATGAAGTCTTTGGATGACAGCTCTTTTAAAGCA
CTTGTATGCGGAGTTCCAAATGTTGGCAAATCTTCGTTTATTAATGCCGC
AAGACAACGTTACTTGAGAAAAGGTGGTAAAGCAACACCAGTTGGGCGGA
AACCAGGCGTTACCAGATCTGTACTGACAAAAATTGTGatatCGCGAAAC
CCAAAGATTTCCATCCTTGACACACCAGgtaTCATTTCGCCATACTTAAA
AGACCCGATGACTGGAATCAAATTGGCTTTAACGGGAACTTTTTCTGATC
ACGTAATAGGAGAAGAAGTAATAGCCGACTACCTACTTTATGCGATGAAT
CAGCAAAAAGTTGAAACATACCTTGAATTATGTGGCCTCGATAGCCCGAC
GGACGATTTCGAAAACTTGATGCAATCAATTGctgaaaaatatgactttt
tgaGAGGTTCAGAGCCAGACTATCGAAAGTGTTCAATTAAATTGATCAAT
GCTTATCGACGAGGTCACCTCGGACCTCTTACTCTGGATTCGGTCACGTA
AAAAAAGGTTTCTCCCTCGGCAGGGCGATACCAATTGGTGATTGACATCA
TAATGTAAAGAGAGCCTAACGCTAGTGTAAACGCGAAGAAAGAATAATTG
TATTCCACACCTTTCTCTTCATCGTTGTAAGTCATTTCAAATCGATTCTC
AATTCTTTCCGTTCCCGAACTCGTCACCACTGGCCCGGTCTTTTTTCGCA
CTTTCCCGTATTGCGGTTGTTCAATTATACGGGTactaaaaatggttaaa
atgaAAAACGTGATGCATATTGTTGATATGATTTGTAAGTTTTGGATGGG
ATCAGCCGGGTAAAGGAAATCTTTTGTCGGGTTACAAACTTCATCTGGTT
CGTTCGTTAACGTCATCCATAACGTGTATGAGGAGTACGCACAAACGACA
GATGATTGGAGCATCCCGGATTTGGGCCGGGCAGCCTGTATTACGGGATG
AATGGAAATGAAAGTTGCTGACAAACACATGTAAACATGGAAAGTTATGA
AGAATAGATTCGATACACAATCTGATTGAGAACTGTACGATTTGTAAAAA
TTAACAAcgataaatattgaaaaagcgTACATGGTGATGGTTGGTAACCA
TAGCAACAGATACCAATAACGCGCCGAATCTCTATTTTCTATATCGTCGA
TCCAATTAATGACATTAGTATTTGTTGTATGTATTGCATCTAGAAGTAGA
ATGAATTGTAACACTATATATCCGAAAGCAGcgttcaaaccaaagaaatg
cCACACTTCACCCGTGTAGTATGACCTGGGTACGAATAAATAACCAATCA
CGATCGATGCTAAAAGTAACATTTTAGTGAACCAGAATTTATTATGTATG
ATGGCGCGGTTTGATTTACTGCTTTGTACATTAATGGTGAATATTCCCAA
GAGTAAGAAAAAGCAGAACGTTCCGAAGAATATCCGATACACTGGCGCTG
GCCCATGAATAAATTCACAATATTTGTATCCAATTTTCGGACAAACTGTC
CGAGATAAGATTCTCCAACAAAACGAAGATAGTAATATCATTGAAACAAT
TGTCACGACAAAAAGTGCTCCCACATAGCGCATGCGCGTGGCTATTGAGG
AACGGATTTTTGGTAGTGAAAGAGCATTCCATAGTAAAGGCAGTGGCCAG
GTGCAACAGTAGAATAATTCGTCAATTCTTGAAATTCTTAACAGTATGTT
TTCACCAGTGTTGGCCATGTCTTTAACAAGATTTGATCAACCACTAAGCT
CTAAAATTACTGATTGATGAATGTCAATCAATAATATCCATCAtccataa
aattcatttttgctTTCATTGCAAGTAGCTTGTAAGACTAACAAACCGTA
CAACTTTTCAAGTAATAGTTTAAGATCAATAGATCGCTTTATGAAGGCTC
AACACccttttcaagaactttttcaGTGTTGCTGAAGTTTGCAATGTTCA
GTTCTGTTAGTTTCCTAAACTCCACTGTTTCcctcaaatcttcattttcg
atATTCCATAGGATTTAGTTATGCTGAAATGAGCAACAGACTTTCTTGTT
TAATTGTTTCTAATTGTTTTTAATGGTTTAAACTTTTGTTGAGTATTTTT
Cagtatattttttattgttgttttgttttgttttgttttgcttgtttttg
tttgaatattgTTTTTTAGTTTGTAGTGTATGTCGTTTgtaattactctc
gggtacttaatagccgtcccc
Run BLAST on NCBI

transcript from alignment at scaffold_142:62935..72942-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048338 ID=TCONS_00048338|Name=TCONS_00048338|organism=Clytia hemisphaerica|type=transcript|length=10008bp|location=Sequence derived from alignment at scaffold_142:62935..72942- (Clytia hemisphaerica)
TTTTAAGGATAGTAACAGAAAGTAAAATAATATAAAAACAAATGATGACA
TCGATTGCGGTGAGAAAGCAGTTCAAGTTTCCAGTCTATTTCACAACCGA
TGTATTTCACAAAGTTTTACCATTCCACATGGCTAAAGGTACTGTGGATA
TATAATTGTTTGTATGATATTTACATTGAGGAGTTTTTGCATCATTACAT
TCTCCTTCTCAAAGCCGACGGCATAGATATTTAGATATATAGATAGTTGT
TACATTAACCGATGTTAATCATGAAAGAAAGCTATGTAAGTAAAGACAAA
GGAAGCTATACACCTTTTCGACCGTAGCCGCGCCAATTGCCGTGCGGGCA
ATTTTTATCTGTTTCACCACCCTAAAACCGCCCCAGTCTTTTTTCCGCAC
CTAAAGACAATAGAAAAAGTGTAAAAAGGGTTGGATCGAGTTTAGGGTGG
TGAATTAAATAATAAAGTAGCACGCGCCTGACCAGGCGGCTACGGTTGAA
AAAGTGTATTGGGGCATAACGTGGAGCACATTCACTTTCACTGGGGAGTA
GGCTACCTTTAGTTATTATTTATAATTTACTTTTTTCTTGGTTGCCAGGG
ATGCAAGTGATGAGGGGAATGGTGAACAATTGTGATTGCGTCATCGAAGT
TCGTGATGCTCGTGTAAGTAAATTACTGTAGCGAGTTTATGTATCTGTGT
TATCCCATTTGTCTATATCCTGATTAACTGAGGATGACGGTAAATCAGCA
CTTTTACCGTCCTCCATTTTTTGGGTCAAAACTGCGGGTTATTCCAAATC
GCTACAGATACGTCTTCAAAATCCGTCTTCAAAAATGCAAATATAAAAAC
CCGCCGCTTGTGTTTTACCAACACAGTATATTAAGATCATCATATGGTGC
TAATTTAGCATTAGAATTAAATGCGTTAATATATTATTAATATGTTCGTT
GTTAAGTCGCTGAAAGTGCTCCGTTTGGTGTAAAAGTATTTGAGATTTCG
AAGAGTTCTCCGGCGAAGCCTATTTTCCGAACACCATTTTAGTAGCAGTC
TGTTTTAGCGAGGAAAATTTAGCTTCCTTGTATTGCCCCTAGAAGGATCT
CAGATTCCTCATCTGCAAGCAGGTAAAAAAGCGTAGAGGGTGTTTGAAAA
TACTCAACAGCCTGTAGTAATGTCAAAATCTTAATCTTCGAAAAACACCA
GCAAATTCAAACGATTTCTATTTCTACATTCCCATTCATCAGTTTATAGG
ATTATACATGCATTTTTTCTTTCGTGTTTAGGTTCCATTATCCAGCTGCA
ACAAACAGTTCGAATATCTTTATGCGCACAAACCTCGAATTCTACTCATT
AATAAAATCGATCTGGCTAATGAAAGTCTCACAAAGGTTAATAAATATCA
TTTTAGAATGTCTGACAAGGGTTTTCGTCGTCGGTGCATGGGATTTTTAG
GATCGCCTGTCAAGTGTGAAAGTTATTGGGGGTGATTGAAGAATTTTCCC
TACGTAGGACCCGAGTATCAGGGGCCCAGAGGGAAACCTACAACATGGAG
CTAAGTGTAATCAAAAATGACTTTAAAACTTTAAATTTGAGCTGGGATGA
GGCTATGAATCTTGCTAGAGAGAAGAAAGAATGGAAACCATCATCAATCG
CCTATAACTGGCCTCTACCCTCTCCCCTACCTCCCTCTCCNTCAAAAGTA
CAAAGACTTTGCTCAAAAAAGATTTCTAAAACTTAAAAATCAAGTTTTTA
ACTAATAGTTATGTTCTTAACAATTTTAACGATAAATTAACTTGAAAACC
GGTTTGACAACTTTTATAAGATTTTAGTTTAAAATGATAGACAAAAGATT
TAATTGATGATTAATATTTAATTGATGATTACGGAGCCACTGAACTGTAG
CATTGCTTAAAACTTCGATTTTCCTTTATGTTTTGAGGCTTGTTTTGAAA
AGTTATACTTTTGGAAAGCCTGAAAAATGCTCCATCTCACTGTGGAAGAA
TTTTCAAAATTGANGACCCGAGTATCAGGGGCCCAGAGGGAAACCTACAA
CATGGAGCTAAGTGTAATCAAAAATGACTTTAAAACTTTAAATTTGAGCT
GGGATGAGGCTATGAATCTTGCTAGAGAGAAGAAAGAATGGAAACCATCA
TCAATCGCCTATAACTGGCCTCTACCCTCTCCCCTACCTCCCTCTCCCCT
CTTCTGTCCCACTGTCCCACAGTTACAAACGAAATGATCACAGTATTCCT
TTCTCTATGTCATCAGTAGGATTTTATTTTTTGAACCTACTGGAGGTCCT
ATAAATTAACCTGTTTTCGTTCGTCTGTTACCAACTTTTCTCAGGATTGA
ATCAGAATTTTTTGATTTTTGGTACAAAGGTGCAAAATAGTGGTGGCCAA
AATGCGACGGAGCCCGATTTTCGGAAAAAAAACTTTTAGTAAATTTCAGC
CAAAAAATGGCTAAAAATAGGGTTTTTGGACTTGTTTTGTTTTATTTTTT
TTCCTCAAGTACATGATTTTGCGAAATAATACCGGTGTAGCGGATTATTT
TAACTCCCCGCAAATGTTGACCCCCCCAGTTAATATAAACTAGGAAATAA
TGACTCCCCTAGAGTAGAAATTTCCTAGGAAATATTGACTCNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCC
TGTTTTTCAGATTTTAAACCTCTTGAGAATTGCTTTAAGATGCTAAATTT
TGCTAATTCGTTACTTTTCTCGTTCAAGGCTATGAAATAAGAATTTTTCG
CAGAGCTGATTTTCGTCGTTGACACCCACCTTTTGCCGAAATTCTTTCAT
TTTTCAAGGGACTTTAAGAATTTTCAAAATGTATGGTATTCCGCTGAACA
GATTTTTCACGTAATTGTCGGTAGACACGAAGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNTGAAGGAAATGCTTCCCTCAGATGGAGTAT
TTCTCTTACGGGGGTCTGTAGAGTTAGCCCTGGATAGCCAAATGAATTTT
TAAATAATTTTGTCATAGATGATAGAGGGGAGTCATTTTAAACCAAAGGG
GGTCAAGATTTCCTAGGAAATAGCAACTCTAGGGAGTCTTCATTTACTAG
TTTATTATGACCGGGGAGTCATTATTTAGGGGAGTTAATTTTTTTTGTCA
CACCGGTAATGTAATCGTTTTTTACGTTACGGGAAAACCAAATGAAATGA
ATTGGATGGACCTCATACTGTACTTTCATTTGTTTTCTAACGTTAGTGGT
CGGGGGGGGGGCACCTTAAGGTAAGTGACTCACCGCAGGTGCGCCTTCTA
GGGTACGGTATCAGGCTTCAAGTGCGTCAGGAGGTCAAAACCAAAATCCA
CAGAATCGAGTTCGACACTAATAAACTGTAACTTTTCTTTTACTGATGTT
TCTTTTCAGGAAGTTTGTGAGCAAAATTTGTCTCAAGAAAACATAGTCCA
AACGTTTTACACCAATTGCAAAACGAAAGAAAAAGAAATCTTCACAGAGG
TTTTTAAGTTGTCATTTTATGATTCCAGTCCATGAAAAATCGAAATGTAA
TAACCGCATTCTTTTTCGCCGTTCAACATATGAGTTCAGTCCATTTAATA
AGTGGGTCTTTCTCTATTTGTCTTCTCTACATCATGACATTGTTGATCGC
AGCACAATTGGTTGCACAGTCTACTGTGGTGCCAATGTAACATTTTATTT
GTAAAAATCTCAGCCCACCAGTGAACCACATTAAAGCTTATGATTCTTTG
TCAATTATGTCAACGATTAATTCATTTAGGTGATGAGATCTTTGAAACAA
ATTCTTCGCCAAAAGAATGAACAAAAATCTATAGCCGTAAGTTCGTTACG
TAAATTTTTTACGCAACAGCTTCGATATTCCGGTCACAAAATAATATTGA
AAATGAATTATTCCTTTTTGGTTATTTATGACTTTTTCCGTAACCTTTAG
ATACAGTAGAGTGTAACACAAAGATCTACGGAAAACACAAACTTGCTTGC
TTTATTGATAGTTCAAGTTATGGAAGCAAATGGTTCGTTAACTGGTGATC
GAGTAATCGAATTTCTGAAATATTTTCATTTTAACTTCATTTTTCAGGGT
GGAAAGCCAATGAAGGCGTTGGATGACAGTTCTTTTAAAGCACTTGTATG
CGGTNTCAGGGTGGGAAGCAAATGAAGTCTTTGGATGACAGCTCTTTTAA
AGCACTTGTATGCGGAGTTCCAAATGTTGGCAAATCTTCGTTTATTAATG
CCGCAAGACAACGTTACTTGAGAAAAGGTAAATTGAGAACAAACTTTACA
CGTTTTTTTTTTTAAGAAACACACTTTTAAGAAACATGAGGCTCAGAATG
CCTAAAAACTAAGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTA
TGTCAAAAAGTTTGGAAACATGTAAGAAACATTTAAGGCTCAAAAGGCCG
ATTTCTTAAGAAACATTGAGGCTGCTTGGTAAAACTAGTTTCTTAAAAAA
ACAATGTGTAATCCAAGGCAATTTCAATTTGTGCTACCTACATTCTGAAA
GGAATTCATGTAATGAATACTAATCTCTGTTGCTTTTTGAATTTCAAGGC
TTACAGTTTTTGACAAATCTCTCCTTCCATAAACTTTTCATAGGTGGTAA
AGCAACACCAGTTGGGCGGAAACCAGGCGTTACCAGATCTGTACTGACAA
AAATTGTGGTAAGTATTTCATCTTACGATATGTCTTTATGGTTTCTGTTT
TTGCTAGATAAATATTTTTTTATTCCAGGCATCAAGGACTTAAAAAGTTT
CATAAATCATTCTGGATACGGCAATTTTTAGTCCAATTTTCTTTTTCAGA
TATCGCGAAACCCAAAGATTTCCATCCTTGACACACCAGGTATTAAACTC
ATTCAATGAATGAATATCATTCCTTCAGATTCATTGAACGATGTTCAATA
TGGCACCACAATTCATTTAGCAATTAAATCGACGCCTTTACCAGGGTTGA
GAATCGCAATACTAATACGCTGCAGAGATTCTCGGACTGTTTATAAAAAT
ACTTATACATTGAGTATTGAAAAGTTATCTAAATTTACAAACTTCATCAT
TTTTATAATTTTTTTCAAGGTATCATTTCGCCATACTTAAAAGACCCGAT
GACTGGAATCAAATTGGCTTTAACGGGTATTTGAATTATTTGTGAAAGAA
ACTGTGGACAATATTCTTTTTATGTATTAGATGGTGTCTATTTCTCCATT
CGACAATAAGGCACTGAATATATTGTACAAATGACTTTAAATTTTACAAC
ACAGTGCTCAATACCGAGATTGACAGAGCGGACACTGGATATATATGACT
ACCTAATAATCTTACGAGGATTGTTTTTAATTCTCCTCGACTTTTTTAGG
AACTTTTCCTGATCACGTAATAGGAGAAGAANCTTACGAGGATTGTTTTT
AATTCTCCTCGACTTTTTTAGGAACTTTTTCTGATCACGTAATAGGAGAA
GAAGTAATAGCCGACTACCTACTTTATGCGATGAATCAGCAAAAAGTTGA
AACGTAAGTTAAATATTTTTAGTGTCAAACCAACGAAATGATGTAGACGA
AGCTTACAATTACATTCGTACAATCAAAATGCTCTACCATCTGAATATCT
GAAAAGTTCCGAGGCCCCTAATAACCCTTTTTGTCCAGGATACTTGTAGA
ATTTTCGTGTGGTCATTTTGACGGCTTTATCTTGCAAATCGCTTCCCATG
CAATTTTAGCTTTCATTTGTTTCATTTTTTTTTTCATGATGCATGTGTTG
TAAGGGCACCGTAGGTACCGTAACTTCGTGTAATGCCGACATAGCAACTA
TCTGGTCTTTAAATGTTAATGAATAAAACCTTCTGAATAAGCTGTTTGAA
AACAATCACTCTAACTACTCGTAACTACTTAACAGACCAGATAGTTGTTA
TGATAGAAGTTACGTTGGCCAGTATAATGTGCCTTTCTGTTTTGATGATC
TGATATATTTATCTATCTTTTTTCAGATACCTTGAATTATGTGGCCTCGA
TAGCCCGACGGACGATTTCGAAAACTTGATGCAATCAATTGCTGAAAAAT
ATGACTTTTTGAGAGGTTAGGTTAAACCCCCCAAACTTTTACAAAATTGA
ACATTCGCCAAATTAAATCCCCGCTAAAAATCGATTTAAATACAACAAAA
TTAATCAATCAGGTAGAATGGTTCTTGTTTACACGCTAGTCTTGTTTTCG
AAGCAAAAGAAGTTGATTCGTAAATCTTGAATTAATTTTGGTAGTGATAA
AAATATGGCGACTTTGGTGTATTTGAAAAAATTATGAACTCAAAATTTAA
CAAATCGCCCAAAATTAGCCACTAGGTAGAATGGCTTTCATTCGGGGGCT
TTCGGAAACTTTTGATGGTAATTTTTTAGTTTGGTTCCTCTCCTTTTAGG
TTCAGAGCCAGACTATCGAAAGTGTTCAATTAAATTGATCAATGCTTATC
GACGAGGTCACCTCGGACCTCTTACTCTGGATTCGGTCACGTAAAAAAAG
GTTTCTCCCTCGACAGGTAGCTTAATTTAATATTATTAACAAATATATAA
TAAGAGTACTTGTATTAGGCCACACGTCATCTTCAAAGGCTCTAGAAATC
AAAACGTCCGAGTACCTTTTATAATCACAAAGCGTTGTTCGGATTTTAAT
CTGAGATACTGCATTAATAATTCCATAAGTGTAATTATTTATTTGTTCAT
GAAAACGGAATCGTAAAAGCATAAATCTTTATAGGAATATGGAAAAATAA
CAGGTGCAACCATACTCCAGATGTACAAAAACACACAAAACATGCCACTA
CATAATTTAATCCACACAGCGCCCCATCCCGCCATAAGTTTAACAGTAAA
GTTCTCCTCTTCTTCAGGGCGATACCAATTGGTGATTGACATCATAATGT
AAAGAGAGCCTAACGCTAGTGTAAACGCGAAGAAAGAATAATTGTATTCC
ACACCTTTCTCTTCATCGTTGTAAGTCATTTCAAATCGATTCTCAATTCT
TTCCGTTCCCGAACTCGTCACCACTGGCCCGGTCTTTTTTCGCACTTTTC
CGTATTGCGGTTGTTCAACTATACGGGTACTAAAAATGGTTAAAATGAAA
AACGTGATGCATATTGTTGATATGATTTGTAAGTTTTGGATGGGATCAGC
CGGGTAAAGGAAATCTTTTGTCGGGTTACAAACTTCATCTGGTTCGTTCG
TTAACGTCATCCATAACGTGTATGAGGAGTACGCACAAACGACAGATGAT
TGGAGCATCCCGGATTTGGGCCGGGCAGCCTGTATTACGNTCCTTTTAGG
TTCAGAGCCAGACTATCGAAAGTGTTCAATTAAATTGATCAATGCTTATC
GACGAGGTCACCTCGGACCTCTTACTCTGGATTCGGTCACGTAAAAAAAG
GTTTCTCCCTCGGCAGGTAGCTTAATTTAATATTATTAACAAATGTAAGA
GTAATTGTATTAGGCCACGTCATCTTCAAAGGCTCTAGAAATCAAAACGT
CCGAGTACCTTTTATAATCACAAAGCGTTATTCGGATTTTAATCTGAGAT
ACTGCATTAATAATTCCATAAGTGTAATTATTTATTTGGTCATGAAAACG
GAATCGTAAAAGCATAAATCTTTATAGGAATATGGAAAAATAACAGGTGC
AACCATACTCCAGATGTACAAAAACACACAAAACATGCCACTACATAATT
TAATCCACACAGCGCCCCATCCCGCCATAAGTTTAACAGTAAAGTTCTCC
TCTTCTTCAGGGCGATACCAATTGGTGATTGACATCATAATGTAAAGAGA
GCCTAACGCTAGTGTAAACGCGAAGAAAGAATAATTGTATTCCACACCTT
TCTCTTCATCGTTGTAAGTCATTTCAAATCGATTCTCAATTCTTTCCGTT
CCCGAACTCGTCACCACTGGCCCGGTCTTTTTTCGCACTTTCCCGTATTG
CGGTTGTTCAATTATACGGGTACTAAAAATGGTTAAAATGAAAAACGTGA
TGCATATTGTTGATATGATTTGTAAGTTTTGGATGGGATCAGCCGGGTAA
AGGAAATCTTTTGTCGGGTTACAAACTTCATCTGGTTCGTTCGTTAACGT
CATCCATAACGTGTATGAGGAGTACGCACAAACGACAGATGATTGGAGCA
TCCCGGATTTGGGCCGGGCAGCCTGTATTACGGGATGAATGGAAATGAAA
GTTGCTGACAAACACATGTAAACATGGAAAGTTATGAAGAATAGATTCGA
TACACAATCTGATTGAGAACTGTACGATTTGTAAAAATTAACAACGATAA
ATATTGAAAAAGCGTACATGGTGATGGTTGGTAACCATAGCAACAGATAC
CAATAACGCGCCGAATCTCTATTTTCTATATCGTCGATCCAATTAATGAC
ATTAGTATTTGTTGTATGTATTGCATCTAGAAGTAGAATGAATTGTAACA
CTATATATCCGAAAGCAGCGTTCAAACCAAAGAAATGCCACACTTCACCC
GTGTAGTATGACCTGGGTACGAATAAATAACCAATCACGATCGATGCTAA
AAGTAACATTTTAGTGAACCAGAATTTATTATGTATGATGGCGCGGTTTG
ATTTACTGCTTTGTACATTAATGGTGAATATTCCCAAGAGTAAGAAAAAG
CAGAACGTTCCGAAGAATATCCGATACACTGGCGCTGGCCCATGAATAAA
TTCACAATATTTGTATCCAATTTTCGGACAAACTGTCCGAGATAAGATTC
TCCAACAAAACGAAGATAGTAATATCATTGAAACAATTGTCACGACAAAA
AGTGCTCCCACATAGCGCATGCGCGTGGCTATTGAGGAACGGATTTTTGG
TAGTGAAAGAGCATTCCATAGTAAAGGCAGTGGCCAGGTGCAACAGTAGA
ATAATTCGTCAATTCTTGAAATTCTTAACAGTATGTTTTCACCAGTGTTG
GCCATGTCTTTAACAAGATTTGATCAACCACTAAGCTCTAAAATTACTGA
TTGATGAATGTCAATCAATAATATCCATCATCCATAAAATTCATTTTTGC
TTTCATTGCAAGTAGCTTGTAAGACTAACAAACCGTACAACTTTTCAAGT
AATAGTTTAAGATCAATAGATCGCTTTATGAAGGCTCAACACCCTTTTCA
AGAACTTTTTCAGTGTTGCTGAAGTTTGCAATGTTCAGTTCTGTTAGTTT
CCTAAACTCCACTGTTTCCCTCAAATCTTCATTTTCGATATTCCATAGGA
TTTAGTTATGCTGAAATGAGCAACAGACTTTCTTGTTTAATTGTTTCTAA
TTGTTTTTAATGGTTTAAACTTTTGTTGAGTATTTTTCAGTATATTTTTT
ATTGTTGTTTTGTTTTGTTTTGTTTTGCTTGTTTTTGTTTGAATATTGTT
TTTTAGTTTGTAGTGTATGTCGTTTGTAATTACTCTCGGGTACTTAATAG
CCGTCCCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030761XLOC_030761Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048338-exon-scaffold_142-1575043694:72805..72942TCONS_00048338-exon-scaffold_142-1575043694:72805..72942Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1575043694:72280..72344TCONS_00048338-exon-scaffold_142-1575043694:72280..72344Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1575043694:71557..71661TCONS_00048338-exon-scaffold_142-1575043694:71557..71661Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1575043694:69144..69233TCONS_00048338-exon-scaffold_142-1575043694:69144..69233Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1575043694:68807..68863TCONS_00048338-exon-scaffold_142-1575043694:68807..68863Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1575043694:68366..68483TCONS_00048338-exon-scaffold_142-1575043694:68366..68483Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1575043694:67735..67799TCONS_00048338-exon-scaffold_142-1575043694:67735..67799Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1575043694:67554..67593TCONS_00048338-exon-scaffold_142-1575043694:67554..67593Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1575043694:67267..67323TCONS_00048338-exon-scaffold_142-1575043694:67267..67323Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1575043694:66890..66971TCONS_00048338-exon-scaffold_142-1575043694:66890..66971Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1575043694:66328..66416TCONS_00048338-exon-scaffold_142-1575043694:66328..66416Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1575043694:64977..65093TCONS_00048338-exon-scaffold_142-1575043694:64977..65093Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1575043694:62935..64632TCONS_00048338-exon-scaffold_142-1575043694:62935..64632Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1510915933:72805..72942TCONS_00048338-exon-scaffold_142-1510915933:72805..72942Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1510915933:72280..72344TCONS_00048338-exon-scaffold_142-1510915933:72280..72344Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1510915933:71557..71661TCONS_00048338-exon-scaffold_142-1510915933:71557..71661Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1510915933:69144..69233TCONS_00048338-exon-scaffold_142-1510915933:69144..69233Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1510915933:68807..68863TCONS_00048338-exon-scaffold_142-1510915933:68807..68863Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1510915933:68366..68483TCONS_00048338-exon-scaffold_142-1510915933:68366..68483Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1510915933:67735..67799TCONS_00048338-exon-scaffold_142-1510915933:67735..67799Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1510915933:67554..67593TCONS_00048338-exon-scaffold_142-1510915933:67554..67593Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1510915933:67267..67323TCONS_00048338-exon-scaffold_142-1510915933:67267..67323Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1510915933:66890..66971TCONS_00048338-exon-scaffold_142-1510915933:66890..66971Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1510915933:66328..66416TCONS_00048338-exon-scaffold_142-1510915933:66328..66416Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1510915933:64977..65093TCONS_00048338-exon-scaffold_142-1510915933:64977..65093Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1510915933:62935..64632TCONS_00048338-exon-scaffold_142-1510915933:62935..64632Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1491911889:72805..72942TCONS_00048338-exon-scaffold_142-1491911889:72805..72942Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1491911889:72280..72344TCONS_00048338-exon-scaffold_142-1491911889:72280..72344Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1491911889:71557..71661TCONS_00048338-exon-scaffold_142-1491911889:71557..71661Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1491911889:69144..69233TCONS_00048338-exon-scaffold_142-1491911889:69144..69233Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1491911889:68807..68863TCONS_00048338-exon-scaffold_142-1491911889:68807..68863Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1491911889:68366..68483TCONS_00048338-exon-scaffold_142-1491911889:68366..68483Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1491911889:67735..67799TCONS_00048338-exon-scaffold_142-1491911889:67735..67799Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1491911889:67554..67593TCONS_00048338-exon-scaffold_142-1491911889:67554..67593Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1491911889:67267..67323TCONS_00048338-exon-scaffold_142-1491911889:67267..67323Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1491911889:66890..66971TCONS_00048338-exon-scaffold_142-1491911889:66890..66971Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1491911889:66328..66416TCONS_00048338-exon-scaffold_142-1491911889:66328..66416Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1491911889:64977..65093TCONS_00048338-exon-scaffold_142-1491911889:64977..65093Clytia hemisphaericaexon
TCONS_00048338-exon-scaffold_142-1491911889:62935..64632TCONS_00048338-exon-scaffold_142-1491911889:62935..64632Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_142supercontigscaffold_142:62935..72942 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.11966	19.5847	1.4879	1.1543	5.91994	0.826015	0.90563	0.939424	0.505234	0.510362	0.609043	0.373442	0.641474	0.422255	0.694965	4.30218	1.21591	1.6472	0.371411	0.441234	7.04246	1.30926	7.97354	1.81682	0.867248	1.16476	0.426521	0.32597	5.66137	7.99265
Blast
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BLAST of TCONS_00048338 vs. Swiss-Prot (Human)
Match: MTG1 (Mitochondrial ribosome-associated GTPase 1 OS=Homo sapiens GN=MTG1 PE=1 SV=2)

HSP 1 Score: 208.764 bits (530), Expect = 7.174e-60
Identity = 117/305 (38.36%), Postives = 184/305 (60.33%), Query Frame = 3 
Query:  111 KVLPFHMAKGMQVMRGMVNNCDCVIEVRDARVPLSSCNKQFEYLYAHKPRILLINKIDLANESLTKEVCEQNLSQENIVQTFYTNCKTKEKEIFTEVMRSLKQILRQKNEQKSIAGGKQMKSLDDSSFKALVCGVPNVGKSSFINAARQRYLRKGGKATPVGRKPGVTRSVLTKIVISRNPKISILDTPGIISPYLKDPMTGIKLALTGTFSDHVIGEEVIADYLLYAMNQQKVETYLELCGLDSPTDDFENLMQSIA------EKYDFLRGS------EPDYRKCSIKLINAYRRGHLGPLTLD 989
            +  P HMAKG++ M+  +   DC+IEV DAR+PLS  N  F+     KP +L++NK+DLA+ +  +++  Q+L  E +    +TNC   E         ++KQI+    E   I    +    ++  +  +V GVPNVGKSS IN+ R+++LRKG KAT VG +PG+TR+V++KI +S  P + +LDTPG+++P ++   TG+KLAL GT  DH++GEE +ADYLLY +N+ +   Y++  GL S  D+ E +++S+A      +K   L G+      +P+Y   +   +  +RRG LG + LD
Sbjct:   29 RWFPGHMAKGLKKMQSSLKLVDCIIEVHDARIPLSGRNPLFQETLGLKPHLLVLNKMDLADLTEQQKIM-QHLEGEGLKNVIFTNCVKDE---------NVKQIIPMVTEL--IGRSHRYHRKENLEYCIMVIGVPNVGKSSLINSLRRQHLRKG-KATRVGGEPGITRAVMSKIQVSERPLMFLLDTPGVLAPRIESVETGLKLALCGTVLDHLVGEETMADYLLYTLNKHQRFGYVQHYGLGSACDNVERVLKSVAVKLGKTQKVKVLTGTGNVNIIQPNYPAAARDFLQTFRRGLLGSVMLD 320
The following BLAST results are available for this feature:
BLAST of TCONS_00048338 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MTG17.174e-6038.36Mitochondrial ribosome-associated GTPase 1 OS=Homo... [more]
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