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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047898 ID=TCONS_00047898|Name=TCONS_00047898|organism=Clytia hemisphaerica|type=transcript|length=2239bpRun BLAST on NCBI protein sequence of TCONS_00047898-protein >TCONS_00047898-protein ID=TCONS_00047898-protein|Name=TCONS_00047898-protein|organism=Clytia hemisphaerica|type=polypeptide|length=294bp PVARSRLPSRIDMERYNIEGAQRRLYQISRQLNNSLHYYSETLHDINFDHRun BLAST on NCBI transcript from alignment at scaffold_139:640553..657317+ Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047898 ID=TCONS_00047898|Name=TCONS_00047898|organism=Clytia hemisphaerica|type=transcript|length=16765bp|location=Sequence derived from alignment at scaffold_139:640553..657317+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_139:640553..657317+ >TCONS_00047898 ID=TCONS_00047898|Name=TCONS_00047898|organism=Clytia hemisphaerica|type=CDS|length=7965bp|location=Sequence derived from alignment at scaffold_139:640553..657317+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047898 vs. Swiss-Prot (Human)
Match: TRAF6 (TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 7.296e-19 Identity = 65/225 (28.89%), Postives = 106/225 (47.11%), Query Frame = 1
Query: 154 ANLPPTELEPERGYDFNLVNEGQNVSGLKCTICHLFLRETHSTPCHHAFCRGCLMKWNQQQPSNARGLKRCPSCNEHYDPKKISFNGVVDRMVKNDIDVKCPQHEKECQWQGKIIDYKDHEEKCDYEMIRCKNKGCQENVARLKMNYH-EGNCGYRRVECDFCCLEMSAREIENHHGECPFINVECPNDECQLEYLRQEIPKHLAEECLYEKIACEYSDVGCNQK 825
NL + +E +GYD + S +C IC + LRE TPC H FC+ C++K S +CP NE ++ + R + + + VKCP + C + ++ +DH+ C++ ++ C CQ + +N H +C R+V CD C M+ + E H CP NV C + C +R+++P H +C I C +S GC++K
Sbjct: 43 GNLSSSFMEEIQGYDVEF--DPPLESKYECPICLMALREAVQTPCGHRFCKACIIK------SIRDAGHKCPVDNEILLENQLFPDNFAKREILS-LMVKCPN--EGCLHKMELRHLEDHQAHCEFALMDCPQ--CQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVIC--EYCNTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEK 252 The following BLAST results are available for this feature:
BLAST of TCONS_00047898 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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