TCONS_00047898-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00047898-protein
Unique NameTCONS_00047898-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length294

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00047898-protein ID=TCONS_00047898-protein|Name=TCONS_00047898-protein|organism=Clytia hemisphaerica|type=polypeptide|length=294bp
PVARSRLPSRIDMERYNIEGAQRRLYQISRQLNNSLHYYSETLHDINFDH
FANLPPTELEPERGYDFNLVNEGQNVSGLKCTICHLFLRETHSTPCHHAF
CRGCLMKWNQQQPSNARGLKRCPSCNEHYDPKKISFNGVVDRMVKNDIDV
KCPQHEKECQWQGKIIDYKDHEEKCDYEMIRCKNKGCQENVARLKMNYHE
GNCGYRRVECDFCCLEMSAREIENHHGECPFINVECPNDECQLEYLRQEI
PKHLAEECLYEKIACEYSDVGCNQKNLHHIYFWQVGSTQRHGGA
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_030480XLOC_030480Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00047898TCONS_00047898Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD
IPR001293Znf_TRAF
IPR017907Znf_RING_CS
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0008270zinc ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0008270 zinc ion binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 81..125
e-value: 1.7E-5
score: 34.3
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 80..126
e-value: 8.7E-7
score: 29.1
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 81..126
score: 11.87
IPR001841Zinc finger, RING-typeCDDcd00162RINGcoord: 80..128
e-value: 0.00128027
score: 34.7288
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 247..279
e-value: 3.6E-5
score: 23.4
coord: 189..218
e-value: 1.0E-6
score: 28.3
coord: 144..188
e-value: 7.2E-13
score: 48.0
coord: 219..246
e-value: 2.5E-6
score: 27.1
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 68..143
e-value: 3.9E-13
score: 48.2
IPR001293Zinc finger, TRAF-typePFAMPF02176zf-TRAFcoord: 225..275
e-value: 3.0E-11
score: 43.8
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 225..272
score: 13.491
IPR001293Zinc finger, TRAF-typePROSITEPS50145ZF_TRAFcoord: 171..223
score: 9.851
IPR017907Zinc finger, RING-type, conserved sitePROSITEPS00518ZF_RING_1coord: 96..105
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 207..275
IPR008974TRAF-likeSUPERFAMILY49599TRAF domain-likecoord: 148..208
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 70..132

Blast
[Close]
BLAST of TCONS_00047898-protein vs. Swiss-Prot (Human)
Match: TRAF6 (TNF receptor-associated factor 6 OS=Homo sapiens GN=TRAF6 PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 1.654e-20
Identity = 65/225 (28.89%), Postives = 106/225 (47.11%), Query Frame = 0 
Query:   52 ANLPPTELEPERGYDFNLVNEGQNVSGLKCTICHLFLRETHSTPCHHAFCRGCLMKWNQQQPSNARGLKRCPSCNEHYDPKKISFNGVVDRMVKNDIDVKCPQHEKECQWQGKIIDYKDHEEKCDYEMIRCKNKGCQENVARLKMNYH-EGNCGYRRVECDFCCLEMSAREIENHHGECPFINVECPNDECQLEYLRQEIPKHLAEECLYEKIACEYSDVGCNQK 275
             NL  + +E  +GYD     +    S  +C IC + LRE   TPC H FC+ C++K      S      +CP  NE     ++  +    R + + + VKCP   + C  + ++   +DH+  C++ ++ C    CQ    +  +N H   +C  R+V CD C   M+  + E H   CP  NV C  + C    +R+++P H   +C    I C +S  GC++K
Sbjct:   43 GNLSSSFMEEIQGYDVEF--DPPLESKYECPICLMALREAVQTPCGHRFCKACIIK------SIRDAGHKCPVDNEILLENQLFPDNFAKREILS-LMVKCPN--EGCLHKMELRHLEDHQAHCEFALMDCPQ--CQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFEDKEIHDQNCPLANVIC--EYCNTILIREQMPNHYDLDCPTAPIPCTFSTFGCHEK 252
The following BLAST results are available for this feature:
BLAST of TCONS_00047898-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF61.654e-2028.89TNF receptor-associated factor 6 OS=Homo sapiens G... [more]
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