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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047727 ID=TCONS_00047727|Name=TCONS_00047727|organism=Clytia hemisphaerica|type=transcript|length=544bp
CCCATGCACAAATCTTAGTAGATTCGAAATTCTTAATTTCATTATTGTTT
TTCTCAGACAAAAAGACATAAAATATGACTGAAGAAGCTTTGGCTTGCAA
CTGTACTGGTATTCGATCATGTCTTTTGTGTAACAAATATTCATCGTCAT
CAACAAATCACAATACTCAAATACAATATTATTGGTTTTGTCCTTCATGT
GGTAAAATGTTTAATGGCTCCATTCAAATACCACCAAGCGACGCAATCGA
ACATTCGAATGCTTTCTATAATTGGTGTCAGTTACATGAGGATAACACTC
CTTCACAGTTGCAAATAGAAGGAATACATATCACTCAAGCCTTTGTAACC
TCTGAGGAAGAGAGAGCATTGGTGACAGGGATTGATGAAGGAGAATGGAA
ACTATCACAGTCTGGTCGGCGGAAACAGGATTTTGGACCAAAAGCGAATT
TTAAAAAACGAAAAGTCAAGCTGGGATCATTCAACGGATTCCCGTCTTAT
ACTGAAAAACTGATTGGAAAGTTACCTACAAATGAACGATTAAN Run BLAST on NCBI protein sequence of TCONS_00047727-protein >TCONS_00047727-protein ID=TCONS_00047727-protein|Name=TCONS_00047727-protein|organism=Clytia hemisphaerica|type=polypeptide|length=156bp
MTEEALACNCTGIRSCLLCNKYSSSSTNHNTQIQYYWFCPSCGKMFNGSI
QIPPSDAIEHSNAFYNWCQLHEDNTPSQLQIEGIHITQAFVTSEEERALV
TGIDEGEWKLSQSGRRKQDFGPKANFKKRKVKLGSFNGFPSYTEKLIGKL
PTNERL Run BLAST on NCBI transcript from alignment at scaffold_135:64625..67389- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047727 ID=TCONS_00047727|Name=TCONS_00047727|organism=Clytia hemisphaerica|type=transcript|length=2765bp|location=Sequence derived from alignment at scaffold_135:64625..67389- (Clytia hemisphaerica)
CCCATGCACAAATCTTAGTAGATTCGAAATTCTTAATTTCATTATTGTTT
TTCTCAGACAAAAAGACATAAAATATGACTGAAGAAGCTTTGGCTTGCAA
CTGTACTGGTATTCGATCATGTCTTTTGTGTAACAAATATTCATCGTCAT
CAACAAATCACAATACTCAAATACAATATTATTGGTTTTGTCCTTCATGT
GGTAAAATGTTTAATGGCTCCATTCAAATACCACCAAGCGACGCAATCGA
ACATTCGAATGCTTTCTATAATTGGTGTCAGTTACATGAGGATAACACTC
CTTCACAGTTGCAAATAGAAGGAATACATATCACTCAAGCCTTTGTAACC
TCTGAGGAAGAGAGAGCATTGGTGACAGGGATTGATGAAGGAGAATGGAA
ACTATCACAGTCTGGTCGGCGGAAACAGGTAAATTTTGACAGTTTATACA
CAATTTTAGCGATAAATTTAGATTTGCAGATGGTCTTTTTGACCAAAATA
TGCAATAAAGAAAAATTGTCTGTCCCATGAAATGTTCACCTTCGAGCTTT
ATTCGGGTTTGACTTTGCCAGTCGGTACCACTACTACATGAAAAGGCAGG
TACCTTATCGGGGAAAATTTTTGTCGGTGAAAATTTTCGTCGGGGAAAAA
TTCGTCACTTGCTAGTAGTTGGTAAACGCATTAAGGCCGGGGAAAACTTT
CGTCACTTGTCCAAAATTTGGTCACTTTTCCCCGACGAAGTTTTTCCCAA
TAAGGTATTGCTTTAACGGGAAATATTTCCCGAACGGGAATAAGGTGAAA
ATAACCCGAAAAGGAAACTGTTTCCAGATTGAAAATTTCATTANAATAAG
GTGAAAATAACCCGAAAAGGAAACTGTTTCCAGATTGAAAATTTCATTAC
TTTTCGGTTTCCCGTTTTGATCAAGAACTTTTCATCGTCCGTTTTCAACG
GGAAATACCGGGTGACCCACGAAAAAGTTCAGACGTTTCCCGACATCTTG
AGGCCGAAAAAATGTCCCAAGGTGCTTGGAGTTTTGATATTTAGAAAGTA
CATATCCTAACTTAAAATTTGAGCTATCTCTTTTTAAATTTGACCAAGTT
GTTCTCTACTAATGAGCTTTTAAAGTCAAAATTCACTTTTCGGAAAGTGT
AAAAAACACGTAAAAAAGAGGTATTGAATTTATGCAATCAATTAGAAAAT
CACTTACAAATTGACTTATTTAACGAGTTTTATGACAAATAAAAACACCT
TTAAAAGTAATTTTTGCTTAAAACAAGACTAGTTTTTATAAAAATTGGCG
CTTTTGTAGATTTTTCAGATTTTTTTCAAAAACTGTATATCAAAAGCGTC
TAAAAATACCAAATTTGATACCCCTTTTTTACATGTTTTTTACACTTTTC
GAAAAGTGAATTTTGACTTTAAAAGCTTATAAGTAGAGAACAAATTGGTC
AAATTTAAAAAGTGATAGCTCAAATTTTAAGTTAGGATATCTACTTTCTA
AATATCTAAATTCCAAGCACTTTGGGACATTTGTTCGGCCTCAAGACGTC
GAGAAACGTCTGAACTTTTTCGTGGGTCACCCGGTAGAATTTTTGTAAAC
AAAGCAGATTTTTGTTTCCCTATCGAGAAAAAGTTTCCAAATACCTTATT
GGTATATATTTTCGCGTGTTACAAATTTTTTCGAAAAAACGTGTTTCGCG
TGCATTAAATTTCGCGATTCCTGACTTCTGGAAAATTTTCGCATGTATTA
AATTTCGCGATTCACTAGGTATTTTCAGAAAGTGGGAATATAAAGCAAGA
AAAAGACTGATTTTACTTGAAACACAACGTTTTTGATGTAAAAATACTAA
CAAAAATTTTTTGCGTGTATTTAATTTGGCGATTTTGTAATTTTGAAAAA
TTTAAACAGTATTAAATTTCGCGAAAATTGACCAAAAAACTCGCGAAATT
AAGTACCCGCGAAAATTTGNGACTAGTTTTTATAAAAATTGGCGCTTTTG
TAGATTTTTCAGATTTTTTTCAAAAACTGTATATCAAAAGCGTCTAAAAA
TACCAAATTTGGTACCCCTTTTTTACGTGTTTTTTACACTTTCCGAAAAG
TGAATTTTGACTTTAAAAGCTCGTAAGTAGAGAACAAATCGGTCAAATTT
AAAAAGTGATAGCTCAAATTTCAAGTTAGGATATCTACTTTCTAAATATC
TAAATTCCAAGCACTTTGGGACATTTGTTCGGCCTCAAGACGTCGAGAAA
CGTCTGAACTTTTTCTTGGGTCACCCGGTAGAATATTTGTAAACAAAGCA
GATGTTTCCCTATCGAGAAAAAGTTTCCAAATAGGGANTTGGGTCACCCG
GTAGAATATTTGTAAACAAAGCAGATGTTTCCCTATCGAGAAAAAGTTTC
CAAATAGGGAAGTTTTTGATTGGGAATGGGGAAAGTATAACTAAGAAGTT
TTATGCCTTTAATGTCAGTATTATATATCTATATTATATATCTACTGAAG
AAAGACGCACATTATTTGAATTATATTTTCATGCATAAAGCGATTTAATT
CTTTGAAATTTCATGAACTGATAGACTATTCATGATTTTAGCATTATTGT
AATAAAGAACTTGCTGGTCTTTTAAGTATCATTTGCTCAATATTTACAGG
ATTTTGGACCAAAAGCGAATTTTAAAAAACGAAAAGTCAAGCTGGGATCA
TTCAACGGATTCCCGTCTTATACTGAAAAACTGATTGGAAAGTTACCTAC
AAATGAACGATTAAN Coding sequence (CDS) from alignment at scaffold_135:64625..67389- >TCONS_00047727 ID=TCONS_00047727|Name=TCONS_00047727|organism=Clytia hemisphaerica|type=CDS|length=936bp|location=Sequence derived from alignment at scaffold_135:64625..67389- (Clytia hemisphaerica)
GATTTTGGACCAAAAGCGAATTTTAAAAAACGAAAAGTCAAGCTGGGATC
ATTCAACGGATTCCCGTCTTATACTGAAAAACTGATTGGAAAGTTACCTA
CAAATGAACGATTAATGACTGAAGAAGCTTTGGCTTGCAACTGTACTGGT
ATTCGATCATGTCTTTTGTGTAACAAATATTCATCGTCATCAACAAATCA
CAATACTCAAATACAATATTATTGGTTTTGTCCTTCATGTGGTAAAATGT
TTAATGGCTCCATTCAAATACCACCAAGCGACGCAATCGAACATTCGAAT
GCTTTCTATAATTGGTGTCAGTTACATGAGGATAACACTCCTTCACAGTT
GCAAATAGAAGGAATACATATCACTCAAGCCTTTGTAACCTCTGAGGAAG
AGAGAGCATTGGTGACAGGGATTGATGAAGGAGAATGGAAACTATCACAG
TCTGGTCGGCGGAAACAGGATTTTGGACCAAAAGCGAATTTTAAAAAACG
AAAAGTCAAGCTGGGATCATTCAACGGATTCCCGTCTTATACTGAAAAAC
TGATTGGAAAGTTACCTACAAATGAACGATTAATGACTGAAGAAGCTTTG
GCTTGCAACTGTACTGGTATTCGATCATGTCTTTTGTGTAACAAATATTC
ATCGTCATCAACAAATCACAATACTCAAATACAATATTATTGGTTTTGTC
CTTCATGTGGTAAAATGTTTAATGGCTCCATTCAAATACCACCAAGCGAC
GCAATCGAACATTCGAATGCTTTCTATAATTGGTGTCAGTTACATGAGGA
TAACACTCCTTCACAGTTGCAAATAGAAGGAATACATATCACTCAAGCCT
TTGTAACCTCTGAGGAAGAGAGAGCATTGGTGACAGGGATTGATGAAGGA
GAATGGAAACTATCACAGTCTGGTCGGCGGAAACAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047727-exon-scaffold_135-1575043694:66962..67389 | TCONS_00047727-exon-scaffold_135-1575043694:66962..67389 | Clytia hemisphaerica | exon |
| TCONS_00047727-exon-scaffold_135-1575043694:64625..64740 | TCONS_00047727-exon-scaffold_135-1575043694:64625..64740 | Clytia hemisphaerica | exon |
| TCONS_00047727-exon-scaffold_135-1510915933:66962..67389 | TCONS_00047727-exon-scaffold_135-1510915933:66962..67389 | Clytia hemisphaerica | exon |
| TCONS_00047727-exon-scaffold_135-1510915933:64625..64740 | TCONS_00047727-exon-scaffold_135-1510915933:64625..64740 | Clytia hemisphaerica | exon |
| TCONS_00047727-exon-scaffold_135-1491911889:66962..67389 | TCONS_00047727-exon-scaffold_135-1491911889:66962..67389 | Clytia hemisphaerica | exon |
| TCONS_00047727-exon-scaffold_135-1491911889:64625..64740 | TCONS_00047727-exon-scaffold_135-1491911889:64625..64740 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_135 | supercontig | scaffold_135:64625..67389 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
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| IPR027450 | AlkB-like |
Blast
BLAST of TCONS_00047727 vs. Swiss-Prot (Human)
Match: ALKB4 (Alpha-ketoglutarate-dependent dioxygenase alkB homolog 4 OS=Homo sapiens GN=ALKBH4 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 2.235e-20 Identity = 49/146 (33.56%), Postives = 71/146 (48.63%), Query Frame = 3
Query: 96 CNCTGIRSCLLCNKYSSSSTNHN---TQIQYYWFCPSCGKMFNGSIQIPPSDAIEHSNAFYNWCQLHEDNTPSQLQIEGIHITQAFVTSEEERALVTGIDEGEWKLSQSGRRKQDFGPKANFKKRKVKLGSFNGFPSYTEKLIGKL 524
C C GIR+CL+C + S + + +C G E S+ F W G+ + + FVT EEE LV +D WKLSQSGRRKQD+GPK NF+K+K+K F G PS++ +++ ++
Sbjct: 15 CGCKGIRTCLICERQRGSDPPWELPPAKTYRFIYCSDTGWAVG----------TEESD-FEGW----------AFPFPGVMLIEDFVTREEEAELVRLMDRDPWKLSQSGRRKQDYGPKVNFRKQKLKTEGFCGLPSFSREVVRRM 139
The following BLAST results are available for this feature:
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