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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047677 ID=TCONS_00047677|Name=TCONS_00047677|organism=Clytia hemisphaerica|type=transcript|length=3187bpRun BLAST on NCBI protein sequence of TCONS_00047677-protein >TCONS_00047677-protein ID=TCONS_00047677-protein|Name=TCONS_00047677-protein|organism=Clytia hemisphaerica|type=polypeptide|length=700bp MSTRKVYSSQGKSSYHLGGAHKDISANAKPSDSVPHNGVSYDDLKKHCLKRun BLAST on NCBI transcript from alignment at scaffold_133:411086..430048- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047677 ID=TCONS_00047677|Name=TCONS_00047677|organism=Clytia hemisphaerica|type=transcript|length=18963bp|location=Sequence derived from alignment at scaffold_133:411086..430048- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_133:411086..430048- >TCONS_00047677 ID=TCONS_00047677|Name=TCONS_00047677|organism=Clytia hemisphaerica|type=CDS|length=27339bp|location=Sequence derived from alignment at scaffold_133:411086..430048- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00047677 vs. Swiss-Prot (Human)
Match: CAN9 (Calpain-9 OS=Homo sapiens GN=CAPN9 PE=1 SV=1) HSP 1 Score: 626.32 bits (1614), Expect = 0.000e+0 Identity = 317/672 (47.17%), Postives = 455/672 (67.71%), Query Frame = 2
Query: 461 ANAKPSDS-VPHN-GVSYDDLKKHCLKQGVLFEDPDFPAVDQSMFFSRKPPRPFVWKRPKELVSDPKMFVGGASRFDITQGMLGDCWLLAAVAALCQYEGLLYQVVPPDQSFSSSDYCGIVRFRFWQYGRWEEVVVDDRLPTYNNKLVFLHSAQNNEFWSALLEKAYAKLCGSYESLKGGQTSEAMEDFTGGVTETFNTAKPPAKFYSLLMKAQERQSLMCCSIEAK-PNEIEAKLNNGLIKGHAYTITSVQKAHVRGQEIELIRIRNPWGNEREWTGAWSDGSNEWKMLSDSEKKELGISYDDDGEFWMSFQDFCANYTKVEVCMLSPDSAGESDKKRWEMQINQGTWQQHVSAGGCRNFPDSFHLNPQYIVKLEDGDDDDDNCTIVIGLIQKGRRKQKRVGAQNLTIGFSVYKLDDDKDEYMQDDRLSKDFFLYHKSHARSHNFVNSREVTGRFSFEPGEYVIIPSTFKANEEGDFIMRMFSEKAHAGGSMDTKTQIEYKPKVLXXX--XXXXXXXXXXXXXXXVAGNDGEIDAFELQAVLNSAFK--KEMNGKSFSLEACRSMVAMVDRDRNGKLDYEEFRTMWTTVMRYKANFAQYDKDQSGDMSATELRDALAKLGFKLSTPVLSSLTLRYANKKGQVNIDDYLQICCRVKSSFESY--LSYQGKSF 2449
A+ P D+ + H+ G S++ +++ CL++G LFED DFPA + S+F+S +P PFVWKRP E+V +P+ +GGA+R DI QG LGDCWLLAA+A+L + L +V+P DQSF Y GI F+FWQ+ W +VV+DDRLPT+ ++LVFLHSA +NEFWSALLEKAYAKL GSYE+LKGG EAMEDFTGGV ETF T + P FY +L KA +R SL+ C I+ + E EA+ GLIKGHAY++T + + RGQ IELIRIRNPWG + EW G+WSD S EW+ + +E+K L + DDGEFWM+F+DF A++ KVE+C L+PD+ E +WE+ ++QG+W + +AGGCRNF D+F NPQ + L + D+ + C+ ++ L+QK RRK KR GA LTIG+++Y+ D +D+ L+KDFF YH S ARS F+N REV+ RF PGEY++IPSTF+ ++E DF +R+FSEK MD I+ ++ + +F+ FE+VAG D E+ A EL+ VLN+ + K++ K SL +C+++++++D NGKL+++EF+ W + ++ F ++D D+SG MS ELR AL GF+LS+ +L + LRYA+++ Q++ DD+L R++++ + LS + K F
Sbjct: 12 AHPVPKDARITHSSGQSFEQMRQECLQRGTLFEDADFPASNSSLFYSERPQIPFVWKRPGEIVKNPEFILGGATRTDICQGELGDCWLLAAIASLTLNQKALARVIPQDQSFGPG-YAGIFHFQFWQHSEWLDVVIDDRLPTFRDRLVFLHSADHNEFWSALLEKAYAKLNGSYEALKGGSAIEAMEDFTGGVAETFQTKEAPENFYEILEKALKRGSLLGCFIDTRSAAESEARTPFGLIKGHAYSVTGIDQVSFRGQRIELIRIRNPWG-QVEWNGSWSDSSPEWRSVGPAEQKRLCHTALDDGEFWMAFKDFKAHFDKVEICNLTPDALEEDAIHKWEVTVHQGSWVRGSTAGGCRNFLDTFWTNPQIKLSLTEKDEGQEECSFLVALMQKDRRKLKRFGANVLTIGYAIYECPD------KDEHLNKDFFRYHASRARSKTFINLREVSDRFKLPPGEYILIPSTFEPHQEADFCLRIFSEKKAITRDMDGNVDIDLPEPPKPTPPDQETEEEQRFRALFEQVAGEDMEVTAEELEYVLNAVLQKKKDIKFKKLSLISCKNIISLMDTSGNGKLEFDEFKVFWDKLKQWINLFLRFDADKSGTMSTYELRTALKAAGFQLSSHLLQLIVLRYADEELQLDFDDFLNCLVRLENASRVFQALSTKNKEF 675 The following BLAST results are available for this feature:
BLAST of TCONS_00047677 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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