TCONS_00047661 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047661
Unique NameTCONS_00047661
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2884

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047661 ID=TCONS_00047661|Name=TCONS_00047661|organism=Clytia hemisphaerica|type=transcript|length=2884bp
TTGATTAGTAACATCTGGTACTAATTATAAACTTTCCCGGCAAAAGGTCT
AGCAAAAGGTCTTCCTTCCTTCCATCACCCTTTTTTCCATCATCATCAct
tttttagagataggaataaaaAGAAGGTCCTAATAATCAAGGACTgaaaa
aagatgttgaaagctgagaaataaagtttcaaccggttggcaaacgatat
catactccaggatgcaagtgaaatttttcaatctgcagacctagacgggg
gttagGTTATTATCAGTAAGGGTTAGGGTCGGAGCTCGAAAGTCACAATA
TATTATATAGGGGCATTCCTTCCCTGAAACTTAACTTAGGATCCTGTAGA
GATCGTGGGGGCACTGATAGGGTTGGGAGCCTTGTTAAGGTCTATAAATT
ACatgctataagtatttgtgaatgacagcatTTTGTTGTGTCTCGTTGAT
GCAATCTGTTAGGCATtattgggtttgtaaaccaaggtagGAGGCCTATT
TCACCAGTaagggcaaatttcagaaaaatacttaaaagcagttagaaaca
cttgagaaagtcagaaaatcaggaaagtagaaaatagggggaaaataagc
ggcaatgcatcctggagtatgatatcgtttgccaactgTTTCAATTAGTA
ATTTGGGCCTTCCTTTATTCCCATCTCTAAAGATGGGTGGCCTAATGAGG
GATGTTAAAACATCAAACCAACTTAACGCTAATTGTtagtaaaaaaagaa
gtctgaaaaattttattcgtgcaaaactttttcataaatGTTTTTAGATT
AGCCTTATCCACTGTAGTAAATTGGTCTACAGCCATTTTTTATGGCTATT
AGCTTCAGGTTATAGGACACTGCCTTCTTAAAATCACTAAAAGAATTGTA
AAAACACTAGAACGTATGATGCCTTTCCTACAGTGGGAAACCTATAAACA
ACACTTAGTTCCCCATGAAGTTAGGGACCATTTACAGGCCTCTAAAAAAA
TGGTATTGAGGTCCTGTAGAAAGGTGTTGAGGGACTTAAAGGTATTTAAA
TTTATTCACAGGTTGTGGTCAAAAATACATCACCACTACAACTAGAGAGT
TTGAGGAAACGTATATTGTTTGTTGTCATATTTTGCAACATTGTGTTCTT
AACAACTGATATTGTCAGTTCATTCTATGGTCTGCATGCTTCTGGGAAGC
AAACTTATACCATTATTCGTGTTGTGGTTGATTATCTCATGTTTATGTTT
GCAGCACTAGTTCTATGTTATTGCATAATCAAGTTAACTAAGCTGCAAAC
AGCCAAGCTGACCTTGGATGGACAGGGTGTTTCCTACTGTCAAGCAGTCA
CAACATGTACTATCATTGCCCTGCTATACATCAGCAGAGCATTTTACAAC
ATCTTAGCTGTTTCACCCATACATCTTCCAACTTTTGGTTATGGTTGGAT
AAATGTCTCAGACCAGGGGGAAGAAGGACAAGATGGCTATGTGAAGGAAA
CTACAGAGGATTATGCATTTATTTCTTTTGGATGTGTGTTATTTGTCTGG
GAGCTTCTCCCAACATTTACTATCGTTTGGTTTTTCAGGGTCAGACAGCC
TGAAGGCAGACTGACTTCAAGTGGGTCAAAATCGGATAGTTATCATGCAA
AGATTTATTTCTTTGACAATCCTAATCGTTATGATTCAGATGATGATATG
GCTGTGCCTTACACACCACCTTCACACACTGGGCTTCTCGGTGCGCACTC
ATTTGGGGCTCGTGGAAGTTCACCTCAAAACTCTTATCCAAACCGGAAAA
TTGTTTCCTCATATGGGTCAGTGCCACCATACACAGGAAGTTATAACCAA
TCTGTTGAAAGTACGCAAAGTCCACTTATCCGTGGAACAACACCACCTCT
TCTTTTTCCAAGGACATCTCTTGGGCACACGCAACAATCACCAACTTCAA
TACTCAGACATCATCATACCAAAGACACTCAATCACCAGTACCTTAACTT
TTTTTAGTATTTCTTCGAAGTTCTCGAAAGGGAAGAAACTTTTTGCTAAA
CAACACTCAATAATGAAACATCAATAAAACTTAAGTATTAATTCACGTCC
AGGAATGAACTTTACTCTATTCTCCTATGTGTAATTGATGAGTACTTTGC
TGATGCAAAAAAGTCCAAACTATGAAATTAATCttaagttttctttttac
aaCCTTCGGATTTTACAATTTGTAATTCCAAGAAAATTTCTGAACTTCCT
TCTATTGTTATAGTTCTTTCCCTCATAACTCCTTCCCTTATGTATTTCAT
ATTTAATAACACTTCACACTTCAATTTAagttattttggaaaaatttata
aattatattattataaaaaatagatCTAAAAAGCTTGATTCCTTAGAAAA
CTTTAGTAATGCTTTGCcttaaatttcatatttttggcatatcttgttta
aaaaaatactctTCTTTATTGACGAAATAAGTATTATATTAGAGCTTAGA
TTATATCATAGTAGTGATTCAGTTCACAATTTGATTGTAGCtgtataaca
ttttttgataaAGATAAATTATATGAAGGtttattgataaaatatttaat
atttttaatgatttaGTTTAGTTGATTTTATATCACAATTTGGAGACCAA
TGTTAATTAATTAACTTAATTACATACAATCAAGCTTAATTGACATGCCC
CATATTTTATTATtatgatcaaaatattttaatttcaacATGAATGATTt
tatacatttatttttttattttaaggaattttgagaaaagtagtttttgt
ttacttGGTTCAGCTATTTGAAACAAGTTTATTTTTGGCATTTATTAAAG
AAACACTAATATAgattttattgttaaaaatcaC
Run BLAST on NCBI

transcript from alignment at scaffold_133:136701..141830-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047661 ID=TCONS_00047661|Name=TCONS_00047661|organism=Clytia hemisphaerica|type=transcript|length=5130bp|location=Sequence derived from alignment at scaffold_133:136701..141830- (Clytia hemisphaerica)
TTGATTAGTAACATCTGGTACTAATTATAAACTTTCCCGGCAAAAGGTCT AGCAAAAGGTCTTCCTTCCTTCCATCACCCTTTTTTCCATCATCATCACT TTTTTAGAGATAGGAATAAAAAGAAGGTCCTAATAATCAAGGACTGAAAA AAGATGTTGAAAGCTGAGAAATAAAGTTTCAACCGGTTGGCAAACGATAT CATACTCCAGGATGCAAGTGAAATTTTTCAATCTGCAGACCTAGACGGGG GTTAGGTTATTATCAGTAAGGGTTAGGGTCGGAGCTCGAAAGTCACAATA TATTATATAGGGGCATTCCTTCCCTGAAACTTAACTTAGGATCCTGTAGA GATCGTGGGGGCACTGATAGGGTTGGGAGCCTTGTTAAGGTCTATAAATT ACATGCTATAAGTATTTGTGAATGACAGCATTTTGTTGTGTCTCGTTGAT GCAATCTGTTAGGCATTATTGGGTTTGTAAACCAAGGTAGGAGGCCTATT TCACCAGTAAGGGCAAATTTCAGAAAAATACTTAAAAGCAGTTAGAAACA CTTGAGAAAGTCAGAAAATCAGGAAAGTAGAAAATAGGGGGAAAATAAGC GGCAATGCATCCTGGAGTATGATATCGTTTGCCAACTGTTTCAATTAGTA ATTTGGGCCTTCCTTTATTCCCATCTCTAAAGATGGGTGGCCTAATGAGG GATGTTAAAACATCAAACCAACTTAACGCTAATTGTTAGTAAAAAAAGAA GTCTGAAAAATTTTATTCGTGCAAAACTTTTTCATAAATGTTTTTAGATT AGCCTTATCCACTGTAGTAAATTGGTCTACAGCCATTTTTTATGGCTATT AGCTTCAGGTTATAGGACACTGCCTTCTTAAAATCACTAAAAGAATTGTA AAAACACTAGAACGTATGATGCCTTTCCTACAGTGGGAAACCTATAAACA ACACTTAGTTCCCCATGAAGTTAGGGACCATTTACAGGCCTCTAAAAAAA TGGTATTGAGGTCCTGTAGAAAGGTGTTGAGGGACTTAAAGGTATTTAAA TTTATTCACAGGTTGTGGTCAAAAATACATCACCACTACAACTAGAGAGT TTGAGGTTTGTTTATTAATCTTATTACTTCTGGTTTTTTTTAATTGTATA ATAATTTTTGAACGCATATTTACACATGTAAAGAAATAGAGGATTGTCAA GTCATGGTGCTATGCAGATTTCAACTTTTTTCCAAGAGGTGAAAAGAACA TGCAAGTGCAAGTGTCTTTTAGTGATATTAAGAGCTAGGAAGGGTCTTTG CTCCAAATCCTGAATGTATTTAAAGTTACAGTATTCAAAATTACTCTAGA CCTTTGATTTGTGAATATGATATATATTTAAATACGCTAGATCAGGCTAG ATCAGCAGCTTTATACTTCAAAATCTTCAATGCTAATAGTATAAAGTAAC TTAACTTTCATAAATCATAAATTAAAACTTTTCTCATATCTAGGAAACGT ATATTGTTTGTTGTCATATTTTGCAACATTGTGTTCTTAACAACTGATAT TGTCAGTTCATTCTATGGTCTGCATGCTTCTGGGAAGCAAACTTATACCA TTATTCGTGTTGTGGTTGATTATCTCATGTTTATGTTTGCAGCACTAGTT CTATGTTATTGCATAATCAAGGTATTTATAAATGATTCAAATTTTATAAT TTATTCATTTTTTTGCTGGTACAGTCATTTTGGATTACTTTCCATAAAGT GTAGCCTTACTTTCATAACATTTTCAACATTTTTTACTTCTTGTTTTATC TACATGTCAGAAATTTACAACATTATTTATTTGCCTTCCATTCTTCCTTC CAAGCTAGCATACTATAGCTTTTAGATAAGAACAGTGCTATTTGGACGCT CTGAAAGTTACCTTTTGCTTATGATAATACTACTCCAATTTTGTTAAAAA TAAACTTGAAATTTACAAAGAATTAAAAAGAGTAAGCAAGTAACGTTTCA ATATTTTTTTGTTTAATTATAAGGTTAAGCTATGGGCTTATATAGTTCAA TTAGAAATGTGACCCTGTTCTTATTTATTTTAGTTAACTAAGCTGCAAAC AGCCAAGCTGACCTTGGATGGACAGGTTTGAGATTAACTTCAACTTTGTA GAATTTTTCCGATATTTAGCTTTCAATTCCCTGCCGTGAAGTGATTGTCT ATAAACATGTTCCTTTTTCGAAAGAACCCTTCCAATTTATTGAATGTTTA GCTCCAAATTACTTTTCTGGTAGAAGTAAATCCTGCAATTGTTCTCTTTT GAACTCAGGGTGTTTCCTACTGTCAAGCAGTCACAACATGTACTATCATT GCCCTGCTATACATCAGCAGAGCATTTTACAACATCTTAGCTGTTTCACC CATACATCTTCCAACTTTTGGTTATGGTTGGATAAATGTCTCAGACCAGG TATCATTGTGATGATCTTTTCATTGTGATATTTTTATGAAATAAAAATAC TCTAAAAAATATATATATAACGTGAACTTTTTAAGAATCTGTTATGATTT GTGATGCTGAAATTATGTATTGCTTTATCTATGAAGACTCTGGTGCTCTG TAAAATTTTCACCAGGTCTTATTTTAATATCAGCTTTAAAATACATTCAA GATTTTTCGCTTAGACCCATCAGAGTTTGTTTTCTTTCTTAGGGGGAAGA AGGACAAGATGGCTATGTGAAGGAAACTACAGAGGATTATGCATTTATTT CTTTTGGATGTGTGTTATTTGTCTGGGAGCTTCTCCCAACATTTACTATC GTTTGGTTTTTCAGGGTCAGACAGCCTGAAGGCAGACTGGTAAAAATATG GATTTTGTTCTTATTACATTGATTTTATATACCAAATAATAGTAATATAT TACTTGACTTTTAGAAGATTGATTTTCTGCAATAACAAATTACAGTCATA TTAAATATGACCAGAAAAACAGTAGAAAATAAATATGTAGCATAATAAAA GTTTTTTGGCTTTTTCTAAAAATGTGAAAAATGGCCTTAGACCTTTTTAA ACCTCACCTCTTTTGGACTTAGGCCATTTTAAAATTAATTGGCTATGAGA ACTTAGGCCTTTTTAAAATTAAGGTTGTGATTTGATACAACAGGGGGGTC AGGGCCCAGGATACCAACCCAGGGCCCAAAAACCTGACTTTTCGAGATTT GAAAGTAGTAGACACCACCACCCCCTCATTTTGGTATCGATACCAACTTG ACTTTTTGAAATTTGAATAAAAAAAATTGACACCACCCCCCGGCCCTGGG TTTGGTATCTGGATCCTGACCCCCCCTGGATACAATACTTTAGTCTCCTT TCTGTATTTGACTCTTATTTTCTCATCCAATAGACTTCAAGTGGGTCAAA ATCGGATAGTTATCATGCAAAGATTTATTTCTTTGACAATCCTAATCGTT ATGATTCAGATGATGATATGGCTGTGCCTTACACACCACCTTCACACACT GGGTATGTCACAACCTTAATTTGACAATCTTACAACCCTTCAACCAAAAG CTATAATATAATCGGGCAGTTAAAAAGGGTTTTTAAAATGTGCAAAAGAA GCAATGTCATTGAATGACTAAAGAAAAAGGCATTTGTTTTAGCCTGTTGA AGTTTTGTCTTGCCCTTGCAGTGTGTCTATAGGTTACCTTATTACACTGA TGATAAAAGTTTAGTTTAAATACATTTGTCATATCAATTTAGCACTAATG ATGGCATAAGACCAAAAAGAGTTTTTCAAGTTCAAAAAAGTAATAACATG ACTAGTTGAAATTGTAATAAGGTATCAATTTGCCTTCTTTTTACATTTAT ACTAAGTGAATGAAATATAAAAGAATAAACTCAAAGGTTATTTCTCCATT ATAATAAAAGTGCTCAAATGAGTCAGCGTTGTTTTTGTCTAAAATTTGTT ATCAAAGTTTAATAAATTTACATTTTAGGCTTCTCGGTGCGCACTCATTT GGGGCTCGTGGAAGTTCACCTCAAAACTCTTATCCAAACCGGAAAATTGT TTCCTCATATGGGTCAGTGCCACCATACACAGGAAGTTATAACCAATCTG TTGAAAGTACGCAAAGTCCACTTATCCGTGGAACAACACCACCTCTTCTT TTTCCAAGGACATCTCTTGGGCACACGCAACAATCACCAACTTCAATACT CAGACATCATCATACCAAAGACACTCAATCACCAGTACCTTAACTTTTTT TAGTATTTCTTCGAAGTTCTCGAAAGGGAAGAAACTTTTTGCTAAACAAC ACTCAATAATGAAACATCAATAAAACTTAAGTATTAATTCACGTCCAGGA ATGAACTTTACTCTATTCTCCTATGTGTAATTGATGAGTACTTTGCTGAT GCAAAAAAGTCCAAACTATGAAATTAATCTTAAGTTTTCTTTTTACAACC TTCGGATTTTACAATTTGTAATTCCAAGAAAATTTCTGAACTTCCTTCTA TTGTTATAGTTCTTTCCCTCATAACTCCTTCCCTTATGTATTTCATATTT AATAACACTTCACACTTCAATTTAAGTTATTTTGGAAAAATTTATAAATT ATATTATTATAAAAAATAGATCTAAAAAGCTTGATTCCTTAGAAAACTTT AGTAATGCTTTGCCTTAAATTTCATATTTTTGGCATATCTTGTTTAAAAA AATACTCTTCTTTATTGACGAAATAAGTATTATATTAGAGCTTAGATTAT ATCATAGTAGTGATTCAGTTCACAATTTGATTGTAGCTGTATAACATTTT TTGATAAAGATAAATTATATGAAGGTTTATTGATAAAATATTTAATATTT TTAATGATTTAGTTTAGTTGATTTTATATCACAATTTGGAGACCAATGTT AATTAATTAACTTAATTACATACAATCAAGCTTAATTGACATGCCCCATA TTTTATTATTATGATCAAAATATTTTAATTTCAACATGAATGATTTTATA CATTTATTTTTTTATTTTAAGGAATTTTGAGAAAAGTAGTTTTTGTTTAC TTGGTTCAGCTATTTGAAACAAGTTTATTTTTGGCATTTATTAAAGAAAC ACTAATATAGATTTTATTGTTAAAAATCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030351XLOC_030351Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047661-exon-scaffold_133-1575043694:140726..141830TCONS_00047661-exon-scaffold_133-1575043694:140726..141830Clytia hemisphaericaexon
TCONS_00047661-exon-scaffold_133-1575043694:140160..140337TCONS_00047661-exon-scaffold_133-1575043694:140160..140337Clytia hemisphaericaexon
TCONS_00047661-exon-scaffold_133-1575043694:139706..139747TCONS_00047661-exon-scaffold_133-1575043694:139706..139747Clytia hemisphaericaexon
TCONS_00047661-exon-scaffold_133-1575043694:139382..139522TCONS_00047661-exon-scaffold_133-1575043694:139382..139522Clytia hemisphaericaexon
TCONS_00047661-exon-scaffold_133-1575043694:138992..139138TCONS_00047661-exon-scaffold_133-1575043694:138992..139138Clytia hemisphaericaexon
TCONS_00047661-exon-scaffold_133-1575043694:138329..138447TCONS_00047661-exon-scaffold_133-1575043694:138329..138447Clytia hemisphaericaexon
TCONS_00047661-exon-scaffold_133-1575043694:136701..137852TCONS_00047661-exon-scaffold_133-1575043694:136701..137852Clytia hemisphaericaexon
TCONS_00047661-exon-scaffold_133-1510915933:140726..141830TCONS_00047661-exon-scaffold_133-1510915933:140726..141830Clytia hemisphaericaexon
TCONS_00047661-exon-scaffold_133-1510915933:140160..140337TCONS_00047661-exon-scaffold_133-1510915933:140160..140337Clytia hemisphaericaexon
TCONS_00047661-exon-scaffold_133-1510915933:139706..139747TCONS_00047661-exon-scaffold_133-1510915933:139706..139747Clytia hemisphaericaexon
TCONS_00047661-exon-scaffold_133-1510915933:139382..139522TCONS_00047661-exon-scaffold_133-1510915933:139382..139522Clytia hemisphaericaexon
TCONS_00047661-exon-scaffold_133-1510915933:138992..139138TCONS_00047661-exon-scaffold_133-1510915933:138992..139138Clytia hemisphaericaexon
TCONS_00047661-exon-scaffold_133-1510915933:138329..138447TCONS_00047661-exon-scaffold_133-1510915933:138329..138447Clytia hemisphaericaexon
TCONS_00047661-exon-scaffold_133-1510915933:136701..137852TCONS_00047661-exon-scaffold_133-1510915933:136701..137852Clytia hemisphaericaexon
TCONS_00047661-exon-scaffold_133-1491911889:140726..141830TCONS_00047661-exon-scaffold_133-1491911889:140726..141830Clytia hemisphaericaexon
TCONS_00047661-exon-scaffold_133-1491911889:140160..140337TCONS_00047661-exon-scaffold_133-1491911889:140160..140337Clytia hemisphaericaexon
TCONS_00047661-exon-scaffold_133-1491911889:139706..139747TCONS_00047661-exon-scaffold_133-1491911889:139706..139747Clytia hemisphaericaexon
TCONS_00047661-exon-scaffold_133-1491911889:139382..139522TCONS_00047661-exon-scaffold_133-1491911889:139382..139522Clytia hemisphaericaexon
TCONS_00047661-exon-scaffold_133-1491911889:138992..139138TCONS_00047661-exon-scaffold_133-1491911889:138992..139138Clytia hemisphaericaexon
TCONS_00047661-exon-scaffold_133-1491911889:138329..138447TCONS_00047661-exon-scaffold_133-1491911889:138329..138447Clytia hemisphaericaexon
TCONS_00047661-exon-scaffold_133-1491911889:136701..137852TCONS_00047661-exon-scaffold_133-1491911889:136701..137852Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_133supercontigscaffold_133:136701..141830 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.05964 1.4605 1.53779 1.94299 1.34122 0.934699 1.60674 1.6689 1.13092 1.57468 1.81846 1.74887 1.08605 1.25176 0.992184 1.23426 0.482842 0.959614 1.18675 1.1831 1.28793 1.67758 0.68529 0.847194 1.81387 1.66222 1.05833 1.73512 1.36172 0.754409
Blast
BLAST of TCONS_00047661 vs. Swiss-Prot (Human)
Match: G137B (Integral membrane protein GPR137B OS=Homo sapiens GN=GPR137B PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 2.740e-31
Identity = 85/236 (36.02%), Postives = 130/236 (55.08%), Query Frame = 3
Query: 1053 YSQVVVKNTSPLQLESLRKRI-LFVV-IFCNIVFLTTDIVSSFYGLHASGKQTYTI-IRVVVDYLMFMFAALVLCYCIIXXXXXXXXXXXXDGQGVSYCQAVTTCTIIALLYISRAFYNILAVS-----PIHLPTFGYGWINVSDQGEEGQDGYVKETTEDYAFISFGCVLFVWELLPTFTIVWFFRVRQPEGRLTSSGS-KSDSYHAKIYFFDNPNRYDSDDDMAVPYTPPSHTG 1733
            ++QV+ K  S    E L+ R+ L++  +F ++VFL  ++  +      + ++   + +RV ++  +F+  A+ L  C+ K++K+  A + L+ +G S CQ       + LLY SRA YN+  +S      +H  +F Y W NVSDQ +      +K    D  ++ FG VLFVWELLPT  +V+FFRVR P   LT+ G   S  +  + YFFDNP RYDSDDD+A    P    G
Sbjct:  136 FTQVIFKAKSKYSPELLKYRLPLYLASLFISLVFLLVNLTCAVLVKTGNWERKVIVSVRVAINDTLFVLCAVSLSICLYKISKMSLANIYLESKGSSVCQVTAIGVTVILLYTSRACYNLFILSFSQNKSVH--SFDYDWYNVSDQAD------LKNQLGDAGYVLFGVVLFVWELLPTTLVVYFFRVRNPTKDLTNPGMVPSHGFSPRSYFFDNPRRYDSDDDLAWNIAPQGLQG 363          
The following BLAST results are available for this feature:
BLAST of TCONS_00047661 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
G137B2.740e-3136.02Integral membrane protein GPR137B OS=Homo sapiens ... [more]
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