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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047661 ID=TCONS_00047661|Name=TCONS_00047661|organism=Clytia hemisphaerica|type=transcript|length=2884bp TTGATTAGTAACATCTGGTACTAATTATAAACTTTCCCGGCAAAAGGTCT AGCAAAAGGTCTTCCTTCCTTCCATCACCCTTTTTTCCATCATCATCAct tttttagagataggaataaaaAGAAGGTCCTAATAATCAAGGACTgaaaa aagatgttgaaagctgagaaataaagtttcaaccggttggcaaacgatat catactccaggatgcaagtgaaatttttcaatctgcagacctagacgggg gttagGTTATTATCAGTAAGGGTTAGGGTCGGAGCTCGAAAGTCACAATA TATTATATAGGGGCATTCCTTCCCTGAAACTTAACTTAGGATCCTGTAGA GATCGTGGGGGCACTGATAGGGTTGGGAGCCTTGTTAAGGTCTATAAATT ACatgctataagtatttgtgaatgacagcatTTTGTTGTGTCTCGTTGAT GCAATCTGTTAGGCATtattgggtttgtaaaccaaggtagGAGGCCTATT TCACCAGTaagggcaaatttcagaaaaatacttaaaagcagttagaaaca cttgagaaagtcagaaaatcaggaaagtagaaaatagggggaaaataagc ggcaatgcatcctggagtatgatatcgtttgccaactgTTTCAATTAGTA ATTTGGGCCTTCCTTTATTCCCATCTCTAAAGATGGGTGGCCTAATGAGG GATGTTAAAACATCAAACCAACTTAACGCTAATTGTtagtaaaaaaagaa gtctgaaaaattttattcgtgcaaaactttttcataaatGTTTTTAGATT AGCCTTATCCACTGTAGTAAATTGGTCTACAGCCATTTTTTATGGCTATT AGCTTCAGGTTATAGGACACTGCCTTCTTAAAATCACTAAAAGAATTGTA AAAACACTAGAACGTATGATGCCTTTCCTACAGTGGGAAACCTATAAACA ACACTTAGTTCCCCATGAAGTTAGGGACCATTTACAGGCCTCTAAAAAAA TGGTATTGAGGTCCTGTAGAAAGGTGTTGAGGGACTTAAAGGTATTTAAA TTTATTCACAGGTTGTGGTCAAAAATACATCACCACTACAACTAGAGAGT TTGAGGAAACGTATATTGTTTGTTGTCATATTTTGCAACATTGTGTTCTT AACAACTGATATTGTCAGTTCATTCTATGGTCTGCATGCTTCTGGGAAGC AAACTTATACCATTATTCGTGTTGTGGTTGATTATCTCATGTTTATGTTT GCAGCACTAGTTCTATGTTATTGCATAATCAAGTTAACTAAGCTGCAAAC AGCCAAGCTGACCTTGGATGGACAGGGTGTTTCCTACTGTCAAGCAGTCA CAACATGTACTATCATTGCCCTGCTATACATCAGCAGAGCATTTTACAAC ATCTTAGCTGTTTCACCCATACATCTTCCAACTTTTGGTTATGGTTGGAT AAATGTCTCAGACCAGGGGGAAGAAGGACAAGATGGCTATGTGAAGGAAA CTACAGAGGATTATGCATTTATTTCTTTTGGATGTGTGTTATTTGTCTGG GAGCTTCTCCCAACATTTACTATCGTTTGGTTTTTCAGGGTCAGACAGCC TGAAGGCAGACTGACTTCAAGTGGGTCAAAATCGGATAGTTATCATGCAA AGATTTATTTCTTTGACAATCCTAATCGTTATGATTCAGATGATGATATG GCTGTGCCTTACACACCACCTTCACACACTGGGCTTCTCGGTGCGCACTC ATTTGGGGCTCGTGGAAGTTCACCTCAAAACTCTTATCCAAACCGGAAAA TTGTTTCCTCATATGGGTCAGTGCCACCATACACAGGAAGTTATAACCAA TCTGTTGAAAGTACGCAAAGTCCACTTATCCGTGGAACAACACCACCTCT TCTTTTTCCAAGGACATCTCTTGGGCACACGCAACAATCACCAACTTCAA TACTCAGACATCATCATACCAAAGACACTCAATCACCAGTACCTTAACTT TTTTTAGTATTTCTTCGAAGTTCTCGAAAGGGAAGAAACTTTTTGCTAAA CAACACTCAATAATGAAACATCAATAAAACTTAAGTATTAATTCACGTCC AGGAATGAACTTTACTCTATTCTCCTATGTGTAATTGATGAGTACTTTGC TGATGCAAAAAAGTCCAAACTATGAAATTAATCttaagttttctttttac aaCCTTCGGATTTTACAATTTGTAATTCCAAGAAAATTTCTGAACTTCCT TCTATTGTTATAGTTCTTTCCCTCATAACTCCTTCCCTTATGTATTTCAT ATTTAATAACACTTCACACTTCAATTTAagttattttggaaaaatttata aattatattattataaaaaatagatCTAAAAAGCTTGATTCCTTAGAAAA CTTTAGTAATGCTTTGCcttaaatttcatatttttggcatatcttgttta aaaaaatactctTCTTTATTGACGAAATAAGTATTATATTAGAGCTTAGA TTATATCATAGTAGTGATTCAGTTCACAATTTGATTGTAGCtgtataaca ttttttgataaAGATAAATTATATGAAGGtttattgataaaatatttaat atttttaatgatttaGTTTAGTTGATTTTATATCACAATTTGGAGACCAA TGTTAATTAATTAACTTAATTACATACAATCAAGCTTAATTGACATGCCC CATATTTTATTATtatgatcaaaatattttaatttcaacATGAATGATTt tatacatttatttttttattttaaggaattttgagaaaagtagtttttgt ttacttGGTTCAGCTATTTGAAACAAGTTTATTTTTGGCATTTATTAAAG AAACACTAATATAgattttattgttaaaaatcaC Run BLAST on NCBI transcript from alignment at scaffold_133:136701..141830- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047661 ID=TCONS_00047661|Name=TCONS_00047661|organism=Clytia hemisphaerica|type=transcript|length=5130bp|location=Sequence derived from alignment at scaffold_133:136701..141830- (Clytia hemisphaerica) TTGATTAGTAACATCTGGTACTAATTATAAACTTTCCCGGCAAAAGGTCT
AGCAAAAGGTCTTCCTTCCTTCCATCACCCTTTTTTCCATCATCATCACT
TTTTTAGAGATAGGAATAAAAAGAAGGTCCTAATAATCAAGGACTGAAAA
AAGATGTTGAAAGCTGAGAAATAAAGTTTCAACCGGTTGGCAAACGATAT
CATACTCCAGGATGCAAGTGAAATTTTTCAATCTGCAGACCTAGACGGGG
GTTAGGTTATTATCAGTAAGGGTTAGGGTCGGAGCTCGAAAGTCACAATA
TATTATATAGGGGCATTCCTTCCCTGAAACTTAACTTAGGATCCTGTAGA
GATCGTGGGGGCACTGATAGGGTTGGGAGCCTTGTTAAGGTCTATAAATT
ACATGCTATAAGTATTTGTGAATGACAGCATTTTGTTGTGTCTCGTTGAT
GCAATCTGTTAGGCATTATTGGGTTTGTAAACCAAGGTAGGAGGCCTATT
TCACCAGTAAGGGCAAATTTCAGAAAAATACTTAAAAGCAGTTAGAAACA
CTTGAGAAAGTCAGAAAATCAGGAAAGTAGAAAATAGGGGGAAAATAAGC
GGCAATGCATCCTGGAGTATGATATCGTTTGCCAACTGTTTCAATTAGTA
ATTTGGGCCTTCCTTTATTCCCATCTCTAAAGATGGGTGGCCTAATGAGG
GATGTTAAAACATCAAACCAACTTAACGCTAATTGTTAGTAAAAAAAGAA
GTCTGAAAAATTTTATTCGTGCAAAACTTTTTCATAAATGTTTTTAGATT
AGCCTTATCCACTGTAGTAAATTGGTCTACAGCCATTTTTTATGGCTATT
AGCTTCAGGTTATAGGACACTGCCTTCTTAAAATCACTAAAAGAATTGTA
AAAACACTAGAACGTATGATGCCTTTCCTACAGTGGGAAACCTATAAACA
ACACTTAGTTCCCCATGAAGTTAGGGACCATTTACAGGCCTCTAAAAAAA
TGGTATTGAGGTCCTGTAGAAAGGTGTTGAGGGACTTAAAGGTATTTAAA
TTTATTCACAGGTTGTGGTCAAAAATACATCACCACTACAACTAGAGAGT
TTGAGGTTTGTTTATTAATCTTATTACTTCTGGTTTTTTTTAATTGTATA
ATAATTTTTGAACGCATATTTACACATGTAAAGAAATAGAGGATTGTCAA
GTCATGGTGCTATGCAGATTTCAACTTTTTTCCAAGAGGTGAAAAGAACA
TGCAAGTGCAAGTGTCTTTTAGTGATATTAAGAGCTAGGAAGGGTCTTTG
CTCCAAATCCTGAATGTATTTAAAGTTACAGTATTCAAAATTACTCTAGA
CCTTTGATTTGTGAATATGATATATATTTAAATACGCTAGATCAGGCTAG
ATCAGCAGCTTTATACTTCAAAATCTTCAATGCTAATAGTATAAAGTAAC
TTAACTTTCATAAATCATAAATTAAAACTTTTCTCATATCTAGGAAACGT
ATATTGTTTGTTGTCATATTTTGCAACATTGTGTTCTTAACAACTGATAT
TGTCAGTTCATTCTATGGTCTGCATGCTTCTGGGAAGCAAACTTATACCA
TTATTCGTGTTGTGGTTGATTATCTCATGTTTATGTTTGCAGCACTAGTT
CTATGTTATTGCATAATCAAGGTATTTATAAATGATTCAAATTTTATAAT
TTATTCATTTTTTTGCTGGTACAGTCATTTTGGATTACTTTCCATAAAGT
GTAGCCTTACTTTCATAACATTTTCAACATTTTTTACTTCTTGTTTTATC
TACATGTCAGAAATTTACAACATTATTTATTTGCCTTCCATTCTTCCTTC
CAAGCTAGCATACTATAGCTTTTAGATAAGAACAGTGCTATTTGGACGCT
CTGAAAGTTACCTTTTGCTTATGATAATACTACTCCAATTTTGTTAAAAA
TAAACTTGAAATTTACAAAGAATTAAAAAGAGTAAGCAAGTAACGTTTCA
ATATTTTTTTGTTTAATTATAAGGTTAAGCTATGGGCTTATATAGTTCAA
TTAGAAATGTGACCCTGTTCTTATTTATTTTAGTTAACTAAGCTGCAAAC
AGCCAAGCTGACCTTGGATGGACAGGTTTGAGATTAACTTCAACTTTGTA
GAATTTTTCCGATATTTAGCTTTCAATTCCCTGCCGTGAAGTGATTGTCT
ATAAACATGTTCCTTTTTCGAAAGAACCCTTCCAATTTATTGAATGTTTA
GCTCCAAATTACTTTTCTGGTAGAAGTAAATCCTGCAATTGTTCTCTTTT
GAACTCAGGGTGTTTCCTACTGTCAAGCAGTCACAACATGTACTATCATT
GCCCTGCTATACATCAGCAGAGCATTTTACAACATCTTAGCTGTTTCACC
CATACATCTTCCAACTTTTGGTTATGGTTGGATAAATGTCTCAGACCAGG
TATCATTGTGATGATCTTTTCATTGTGATATTTTTATGAAATAAAAATAC
TCTAAAAAATATATATATAACGTGAACTTTTTAAGAATCTGTTATGATTT
GTGATGCTGAAATTATGTATTGCTTTATCTATGAAGACTCTGGTGCTCTG
TAAAATTTTCACCAGGTCTTATTTTAATATCAGCTTTAAAATACATTCAA
GATTTTTCGCTTAGACCCATCAGAGTTTGTTTTCTTTCTTAGGGGGAAGA
AGGACAAGATGGCTATGTGAAGGAAACTACAGAGGATTATGCATTTATTT
CTTTTGGATGTGTGTTATTTGTCTGGGAGCTTCTCCCAACATTTACTATC
GTTTGGTTTTTCAGGGTCAGACAGCCTGAAGGCAGACTGGTAAAAATATG
GATTTTGTTCTTATTACATTGATTTTATATACCAAATAATAGTAATATAT
TACTTGACTTTTAGAAGATTGATTTTCTGCAATAACAAATTACAGTCATA
TTAAATATGACCAGAAAAACAGTAGAAAATAAATATGTAGCATAATAAAA
GTTTTTTGGCTTTTTCTAAAAATGTGAAAAATGGCCTTAGACCTTTTTAA
ACCTCACCTCTTTTGGACTTAGGCCATTTTAAAATTAATTGGCTATGAGA
ACTTAGGCCTTTTTAAAATTAAGGTTGTGATTTGATACAACAGGGGGGTC
AGGGCCCAGGATACCAACCCAGGGCCCAAAAACCTGACTTTTCGAGATTT
GAAAGTAGTAGACACCACCACCCCCTCATTTTGGTATCGATACCAACTTG
ACTTTTTGAAATTTGAATAAAAAAAATTGACACCACCCCCCGGCCCTGGG
TTTGGTATCTGGATCCTGACCCCCCCTGGATACAATACTTTAGTCTCCTT
TCTGTATTTGACTCTTATTTTCTCATCCAATAGACTTCAAGTGGGTCAAA
ATCGGATAGTTATCATGCAAAGATTTATTTCTTTGACAATCCTAATCGTT
ATGATTCAGATGATGATATGGCTGTGCCTTACACACCACCTTCACACACT
GGGTATGTCACAACCTTAATTTGACAATCTTACAACCCTTCAACCAAAAG
CTATAATATAATCGGGCAGTTAAAAAGGGTTTTTAAAATGTGCAAAAGAA
GCAATGTCATTGAATGACTAAAGAAAAAGGCATTTGTTTTAGCCTGTTGA
AGTTTTGTCTTGCCCTTGCAGTGTGTCTATAGGTTACCTTATTACACTGA
TGATAAAAGTTTAGTTTAAATACATTTGTCATATCAATTTAGCACTAATG
ATGGCATAAGACCAAAAAGAGTTTTTCAAGTTCAAAAAAGTAATAACATG
ACTAGTTGAAATTGTAATAAGGTATCAATTTGCCTTCTTTTTACATTTAT
ACTAAGTGAATGAAATATAAAAGAATAAACTCAAAGGTTATTTCTCCATT
ATAATAAAAGTGCTCAAATGAGTCAGCGTTGTTTTTGTCTAAAATTTGTT
ATCAAAGTTTAATAAATTTACATTTTAGGCTTCTCGGTGCGCACTCATTT
GGGGCTCGTGGAAGTTCACCTCAAAACTCTTATCCAAACCGGAAAATTGT
TTCCTCATATGGGTCAGTGCCACCATACACAGGAAGTTATAACCAATCTG
TTGAAAGTACGCAAAGTCCACTTATCCGTGGAACAACACCACCTCTTCTT
TTTCCAAGGACATCTCTTGGGCACACGCAACAATCACCAACTTCAATACT
CAGACATCATCATACCAAAGACACTCAATCACCAGTACCTTAACTTTTTT
TAGTATTTCTTCGAAGTTCTCGAAAGGGAAGAAACTTTTTGCTAAACAAC
ACTCAATAATGAAACATCAATAAAACTTAAGTATTAATTCACGTCCAGGA
ATGAACTTTACTCTATTCTCCTATGTGTAATTGATGAGTACTTTGCTGAT
GCAAAAAAGTCCAAACTATGAAATTAATCTTAAGTTTTCTTTTTACAACC
TTCGGATTTTACAATTTGTAATTCCAAGAAAATTTCTGAACTTCCTTCTA
TTGTTATAGTTCTTTCCCTCATAACTCCTTCCCTTATGTATTTCATATTT
AATAACACTTCACACTTCAATTTAAGTTATTTTGGAAAAATTTATAAATT
ATATTATTATAAAAAATAGATCTAAAAAGCTTGATTCCTTAGAAAACTTT
AGTAATGCTTTGCCTTAAATTTCATATTTTTGGCATATCTTGTTTAAAAA
AATACTCTTCTTTATTGACGAAATAAGTATTATATTAGAGCTTAGATTAT
ATCATAGTAGTGATTCAGTTCACAATTTGATTGTAGCTGTATAACATTTT
TTGATAAAGATAAATTATATGAAGGTTTATTGATAAAATATTTAATATTT
TTAATGATTTAGTTTAGTTGATTTTATATCACAATTTGGAGACCAATGTT
AATTAATTAACTTAATTACATACAATCAAGCTTAATTGACATGCCCCATA
TTTTATTATTATGATCAAAATATTTTAATTTCAACATGAATGATTTTATA
CATTTATTTTTTTATTTTAAGGAATTTTGAGAAAAGTAGTTTTTGTTTAC
TTGGTTCAGCTATTTGAAACAAGTTTATTTTTGGCATTTATTAAAGAAAC
ACTAATATAGATTTTATTGTTAAAAATCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00047661-exon-scaffold_133-1575043694:140726..141830 | TCONS_00047661-exon-scaffold_133-1575043694:140726..141830 | Clytia hemisphaerica | exon |
TCONS_00047661-exon-scaffold_133-1575043694:140160..140337 | TCONS_00047661-exon-scaffold_133-1575043694:140160..140337 | Clytia hemisphaerica | exon |
TCONS_00047661-exon-scaffold_133-1575043694:139706..139747 | TCONS_00047661-exon-scaffold_133-1575043694:139706..139747 | Clytia hemisphaerica | exon |
TCONS_00047661-exon-scaffold_133-1575043694:139382..139522 | TCONS_00047661-exon-scaffold_133-1575043694:139382..139522 | Clytia hemisphaerica | exon |
TCONS_00047661-exon-scaffold_133-1575043694:138992..139138 | TCONS_00047661-exon-scaffold_133-1575043694:138992..139138 | Clytia hemisphaerica | exon |
TCONS_00047661-exon-scaffold_133-1575043694:138329..138447 | TCONS_00047661-exon-scaffold_133-1575043694:138329..138447 | Clytia hemisphaerica | exon |
TCONS_00047661-exon-scaffold_133-1575043694:136701..137852 | TCONS_00047661-exon-scaffold_133-1575043694:136701..137852 | Clytia hemisphaerica | exon |
TCONS_00047661-exon-scaffold_133-1510915933:140726..141830 | TCONS_00047661-exon-scaffold_133-1510915933:140726..141830 | Clytia hemisphaerica | exon |
TCONS_00047661-exon-scaffold_133-1510915933:140160..140337 | TCONS_00047661-exon-scaffold_133-1510915933:140160..140337 | Clytia hemisphaerica | exon |
TCONS_00047661-exon-scaffold_133-1510915933:139706..139747 | TCONS_00047661-exon-scaffold_133-1510915933:139706..139747 | Clytia hemisphaerica | exon |
TCONS_00047661-exon-scaffold_133-1510915933:139382..139522 | TCONS_00047661-exon-scaffold_133-1510915933:139382..139522 | Clytia hemisphaerica | exon |
TCONS_00047661-exon-scaffold_133-1510915933:138992..139138 | TCONS_00047661-exon-scaffold_133-1510915933:138992..139138 | Clytia hemisphaerica | exon |
TCONS_00047661-exon-scaffold_133-1510915933:138329..138447 | TCONS_00047661-exon-scaffold_133-1510915933:138329..138447 | Clytia hemisphaerica | exon |
TCONS_00047661-exon-scaffold_133-1510915933:136701..137852 | TCONS_00047661-exon-scaffold_133-1510915933:136701..137852 | Clytia hemisphaerica | exon |
TCONS_00047661-exon-scaffold_133-1491911889:140726..141830 | TCONS_00047661-exon-scaffold_133-1491911889:140726..141830 | Clytia hemisphaerica | exon |
TCONS_00047661-exon-scaffold_133-1491911889:140160..140337 | TCONS_00047661-exon-scaffold_133-1491911889:140160..140337 | Clytia hemisphaerica | exon |
TCONS_00047661-exon-scaffold_133-1491911889:139706..139747 | TCONS_00047661-exon-scaffold_133-1491911889:139706..139747 | Clytia hemisphaerica | exon |
TCONS_00047661-exon-scaffold_133-1491911889:139382..139522 | TCONS_00047661-exon-scaffold_133-1491911889:139382..139522 | Clytia hemisphaerica | exon |
TCONS_00047661-exon-scaffold_133-1491911889:138992..139138 | TCONS_00047661-exon-scaffold_133-1491911889:138992..139138 | Clytia hemisphaerica | exon |
TCONS_00047661-exon-scaffold_133-1491911889:138329..138447 | TCONS_00047661-exon-scaffold_133-1491911889:138329..138447 | Clytia hemisphaerica | exon |
TCONS_00047661-exon-scaffold_133-1491911889:136701..137852 | TCONS_00047661-exon-scaffold_133-1491911889:136701..137852 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_133 | supercontig | scaffold_133:136701..141830 - |
Blast
BLAST of TCONS_00047661 vs. Swiss-Prot (Human)
Match: G137B (Integral membrane protein GPR137B OS=Homo sapiens GN=GPR137B PE=2 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 2.740e-31 Identity = 85/236 (36.02%), Postives = 130/236 (55.08%), Query Frame = 3
Query: 1053 YSQVVVKNTSPLQLESLRKRI-LFVV-IFCNIVFLTTDIVSSFYGLHASGKQTYTI-IRVVVDYLMFMFAALVLCYCIIXXXXXXXXXXXXDGQGVSYCQAVTTCTIIALLYISRAFYNILAVS-----PIHLPTFGYGWINVSDQGEEGQDGYVKETTEDYAFISFGCVLFVWELLPTFTIVWFFRVRQPEGRLTSSGS-KSDSYHAKIYFFDNPNRYDSDDDMAVPYTPPSHTG 1733
++QV+ K S E L+ R+ L++ +F ++VFL ++ + + ++ + +RV ++ +F+ A+ L C+ K++K+ A + L+ +G S CQ + LLY SRA YN+ +S +H +F Y W NVSDQ + +K D ++ FG VLFVWELLPT +V+FFRVR P LT+ G S + + YFFDNP RYDSDDD+A P G
Sbjct: 136 FTQVIFKAKSKYSPELLKYRLPLYLASLFISLVFLLVNLTCAVLVKTGNWERKVIVSVRVAINDTLFVLCAVSLSICLYKISKMSLANIYLESKGSSVCQVTAIGVTVILLYTSRACYNLFILSFSQNKSVH--SFDYDWYNVSDQAD------LKNQLGDAGYVLFGVVLFVWELLPTTLVVYFFRVRNPTKDLTNPGMVPSHGFSPRSYFFDNPRRYDSDDDLAWNIAPQGLQG 363
The following BLAST results are available for this feature:
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