TCONS_00047346 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047346
Unique NameTCONS_00047346
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length405

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047346 ID=TCONS_00047346|Name=TCONS_00047346|organism=Clytia hemisphaerica|type=transcript|length=405bp
GCAAGTTGAACCCGACTATACACAACTGGAGTCGAACGATCAGGAACGCA
AAAAAGGCAAAAGCAGTCAGCAGTGTTTATCCAACAACTTTATCATGCAA
CTTATTGGTTTCACCAGGTCTTGTTTTGTTATCCTTGCTCGTTAGTATGT
ACTTACCTCTTTGTGGTTTTTGCCTTCACAGCTTAGGTGTAAGTTATTTG
ATAATGTTCACTccctgttttgttttttgaggGGGATCCtacctttttgt
tttgtgggacAATATACAATAGACCTAACTCTTGATACAAAAACTACGga
aaaacgcatatttggactttgtaccctatgcttcacacaagcacttaagc
caaagtctcGCAAAGGCgagacaaaaatcagttttttgaagtttgcaaaa
aaacg
Run BLAST on NCBI

transcript from alignment at scaffold_126:55772..56176-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047346 ID=TCONS_00047346|Name=TCONS_00047346|organism=Clytia hemisphaerica|type=transcript|length=405bp|location=Sequence derived from alignment at scaffold_126:55772..56176- (Clytia hemisphaerica)
GCAAGTTGAACCCGACTATACACAACTGGAGTCGAACGATCAGGAACGCA
AAAAAGGCAAAAGCAGTCAGCAGTGTTTATCCAACAACTTTATCATGCAA
CTTATTGGTTTCACCAGGTCTTGTTTTGTTATCCTTGCTCGTTAGTATGT
ACTTACCTCTTTGTGGTTTTTGCCTTCACAGCTTAGGTGTAAGTTATTTG
ATAATGTTCACTCCCTGTTTTGTTTTTTGAGGGGGATCCTACCTTTTTGT
TTTGTGGGACAATATACAATAGACCTAACTCTTGATACAAAAACTACGGA
AAAACGCATATTTGGACTTTGTACCCTATGCTTCACACAAGCACTTAAGC
CAAAGTCTCGCAAAGGCGAGACAAAAATCAGTTTTTTGAAGTTTGCAAAA
AAACG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030159XLOC_030159Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047346-exon-scaffold_126-1575043694:55772..56176TCONS_00047346-exon-scaffold_126-1575043694:55772..56176Clytia hemisphaericaexon
TCONS_00047346-exon-scaffold_126-1510915933:55772..56176TCONS_00047346-exon-scaffold_126-1510915933:55772..56176Clytia hemisphaericaexon
TCONS_00047346-exon-scaffold_126-1491911889:55772..56176TCONS_00047346-exon-scaffold_126-1491911889:55772..56176Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_126supercontigscaffold_126:55772..56176 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.367833	0.176512	0.616813	0.201139	0.732302	0.192892	0.465431	0.435731	0.740079	0	2.20797	1.20932	0.709934	2.07735	0.445713	0.574215	1.22951	0.211058	0.935644	0.20135	0.693633	0	0.207541	0	0	1.39247	0	0.270599	0.408827	0.373572
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00047346 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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