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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047283 ID=TCONS_00047283|Name=TCONS_00047283|organism=Clytia hemisphaerica|type=transcript|length=2302bpRun BLAST on NCBI transcript from alignment at scaffold_124:75342..80173- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00047283 ID=TCONS_00047283|Name=TCONS_00047283|organism=Clytia hemisphaerica|type=transcript|length=4832bp|location=Sequence derived from alignment at scaffold_124:75342..80173- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00047283 vs. Swiss-Prot (Human)
Match: MFSD8 (Major facilitator superfamily domain-containing protein 8 OS=Homo sapiens GN=MFSD8 PE=1 SV=1) HSP 1 Score: 307.375 bits (786), Expect = 2.210e-94 Identity = 177/483 (36.65%), Postives = 265/483 (54.87%), Query Frame = 1
Query: 148 KERKRSIRVIYANAFIGSISFSIVMASLWPFLQKLDHEVSESFLGWVNAGYSFAQMVSGIFMGYWCEKRNAKEPIFVSIILLAGGSLLYSYAET-------------------FGVVAVSRAVGAQLSTLEERSGVMAQLALWQAIGFSIGPAFQAMAKPIGSNEYEIKAIKMYINVFTLPGFFMIILSIINFVLVALYFKENVHAKEKMKKESRRLRRQSTSFEP-------LDTTIVFTCLLLWFIALSIFALNETILSPVVMNEYAWTRKQTVFNTSILLSVAGVIAIICFLAIAPLEKKFGGKNVLAFGYFLMLVGFVIYLPWGPGYPKLTHEVL-NFQNGTQVVNEVV--------EGDG----GCPYHYDWCRNTPKLHFAQFLTAATLVGIGYPIAAVLLSTLYSKVIGPFPQGKYMGWLTGTGSLARVVGPIYVTAVYQKGGIRWTSVSICLLLTITMCIFAFFWKRLVPYNERF 1479
K R RSIR++Y F+ S+ FS+VM S+WP+LQK+D SFLGWV A YS QMV+ G W R KEP+ VSI++ + LY+Y G VAV R+ A ++L+ER+ MA +++ QA+GF +GP FQ +G IK+ IN++T P L I+N +L+ +E H + ++ + + + S + +D V +L+F+ L IFAL ETI++P+ M+ YAWT++Q V I+L+ GV A++ FL + L KK G + +L G ++ VGF I LPWG +PK+ E L N E++ E D GC WC TP +H AQFLT+A L+G+GYP+ ++ TLYSK++GP PQG YMGWLT +GS AR++GP++++ VY G RW +C ++ +T+ + +KRL+ + R+
Sbjct: 33 KSRWRSIRILYLTMFLSSVGFSVVMMSIWPYLQKIDPTADTSFLGWVIASYSLGQMVASPIFGLWSNYRPRKEPLIVSILISVAANCLYAYLHIPASHNKYYMLVARGLLGIGAGNVAVVRSYTAGATSLQERTSSMANISMCQALGFILGPVFQTCFTFLGEKGVTWDVIKLQINMYTTPVLLSAFLGILNIILILAILRE--HRVDDSGRQCKSINFEEASTDEAQVPQGNIDQVAVVAINVLFFVTLFIFALFETIITPLTMDMYAWTQEQAVLYNGIILAALGVEAVVIFLGVKLLSKKIGERAILLGGLIVVWVGFFILLPWGNQFPKIQWEDLHNNSIPNTTFGEIIIGLWKSPMEDDNERPTGCSIEQAWCLYTPVIHLAQFLTSAVLIGLGYPVCNLMSYTLYSKILGPKPQGVYMGWLTASGSGARILGPMFISQVYAHWGPRWAFSLVCGIIVLTITLLGVVYKRLIALSVRY 513 The following BLAST results are available for this feature:
BLAST of TCONS_00047283 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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