TCONS_00047283 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00047283
Unique Name	TCONS_00047283
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2302

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_124:75342..80173-

transcript sequence

>TCONS_00047283 ID=TCONS_00047283|Name=TCONS_00047283|organism=Clytia hemisphaerica|type=transcript|length=2302bp
CTTACAACTAGTAGAATAGACAAAAAAATGTCATCGGATGATGATGAAAA
AGATCCCTTGATTGCTGGCTCAGAGGGAATCAATTATGACAGCACAATAA
GTAAATACACCAGAACACCATCAGTAGAGTCCTATATTCTAACGGATAAG
GAACGTAAAAGATCAATAAGAGTGATATACGCGAATGCATTCATTGGAAG
TATCAGCTTTTCTATTGTAATGGCATCATTGTGGCCCTTTTTACAAAAAc
ttgacCACGAAGTGTCCGAATCATTTCTTGGTTGGGTCAATGCTGGATAC
AGTTTTGCGCAAATGGTGTCCGGCATTTTCATGGGCTATTGGTGCGAGAA
AAGGAATGCAAAAGAGCCAATCTTTGTGTCCATCATTTTGCTTGCTGGAG
GCAGTCTACTTTATTCTTATGCTGAGACGTTCGGTGTTGTAGCAGTTTCC
AGAGCTGTTGGAGCACAACTGTCAACGTTAGAAGAACGTTCAGGAGTTAT
GGCACAATTAGCTTTATGGCAAGCTATCGGTTTCTCAATAGGTCCAGCTT
TTCAAGCTATGGCCAAACCAATAGGATCAAACGAATATGAGATCAAAGCC
ATCAAGATGTACATCAACGTTTTCACGTTACCTGGTTTCTTCATGATAAT
TCTCAGCATCATCAACTTTGTACTTGTTGCTCTTTACTTTAAAGAAAATG
TCCATgctaaagagaaaatgaaaaaagaaagtcGCCGCTTAAGAAGACAA
TCGACTTCATTTGAGCCGCTTGACACAACGATTGTCTTTACTTGTCTTTT
GCTCTGGTTCATCGCTCTCTCCATATTCGCTCTCAATGAAACGATTTTAT
CACCAGTTGTGATGAACGAGTATGCATGGACACGCAAACAGACAGTCTTC
AACACATCCATACTTCTTTCTGTGGCTGGTGTCATTGCTATCATCTGTTT
CCTCGCCATCGCACCTCTCGAGAAAAAgTTTGGCGGGAAGAATGTTTTGG
CTTTTGGGTATTTCTTAATGTTGGTTGGTTTTGTTATCTATTTGCCCTGG
GGCCCAGGTTACCCAAAACTCACTCATGAAGTGTtgaatttccaaaatgg
tacccAAGTAGTGAACGAAGTGGTTGAAGGAGACGGAGGTTGCCCATATC
ACTACGACTGGTGTAGAAATACTCCCAAATTACATTTTGCACAGTTCCTC
ACTGCTGCTACACTCGTCGGGATTGGATACCCAATAGCTGCAGTTTTGCT
AAGTACACTTTACTCCAAAGTGATTGGCCCATTCCCACAGGGTAAATATA
TGGGATGGTTGACAGGGACAGGTAGTTTAGCCCGTGTAGTTGGTCCTATC
TACGTGACAGCTGTCTATCAGAAGGGTGGTATTCGTTGGACGTCTGTCAG
TATTTGCTTGCTCCTGACCATCACCATGTGTATTTTTGCATTCTTTTGGA
AGAGACTTGTTCCTTATAATGAAAGGTTCAGAACTAAATCACGTCTGTCA
AGCGTTACTGCTTAAACCTGAAGAATTTATTTGCTGTTTGGTAGCCTGGA
AGGAATGAAATCTTCTATTTATTCATTGGTAAACTAATTGGTGCACGTTT
TATGTGCAGGCTATTTGGTTTGACTTGAAATCAAAAACCTAAATTTGACC
CGAACCATGTTTAAATGAAGGGATGTGTTCCAAACAAAAGTCAGCAGCGA
ATGTTTCATTCTAAACAACACGAGACACTCGATATAAGGTGCAAATCAGT
TGGTTGACTCTTCCCCTGGTTTGAGTTCTAGTAAAATAAATCATGTCAGA
TGGTAGCTGACATGGACACCATTTGACCAATGTGTCAAGTAAACAATAAA
Tagataattttataaaaaatgatgtctgtaaattttatattataagaaat
ttgaatttaaactcCTTATTCACGATGATGTTGAggtcagaaaattattt
tgataaaattttatttaaattaatAATATGATTTTATACATGTTAAACAT
GTTAACATTTACCTTTTCATAATAGCTAGTATactttttcaacgtttatt
cGTTTATATCCATNAAAATTTTGGACAAGTAATTTACTTTTTTCATAATA
GCTAGTATACTTTTTACACGTTTATTCGTTTATATCCACATGGcctatca
atattttttaatgaattttaatttattttactttttgatatgtttgaATA
CACCTTTATAACaattacttttgattttgtaaCATCAGTGAGCTGAATTG
AACAACCATGGTTGTGCTCTACCGGGGGAGGAGGTttactcaggcaactt
tt

Run BLAST on NCBI

transcript from alignment at scaffold_124:75342..80173-

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00047283 ID=TCONS_00047283|Name=TCONS_00047283|organism=Clytia hemisphaerica|type=transcript|length=4832bp|location=Sequence derived from alignment at scaffold_124:75342..80173- (Clytia hemisphaerica)
CTTACAACTAGTAGAATAGACAAAAAAATGTCATCGGATGATGATGAAAA
AGATCCCTTGATTGCTGGCTCAGAGGGAATCAATTATGACAGCACAATAA
GGTTTGTCAATGTAATTTTTCTATTTAATTTCCAATATATTCAAATTCAA
TAACTTTATAGGTTAGCACCAAACCATAAAAATCGGAATATTTTCTTTAT
AGTAAATACACCAGAACACCATCAGTAGAGTCCTATATTCTAACGGATAA
GGAACGTAAAAGATCAATAAGAGTGATATACGCGAATGCATTCATTGGAA
GTATCAGTAAGGTTCATTTAGTGTTCGTCCAGATCTAGTCTTTGTTGACT
CTAACAAGTAGTAAATATGGGTTTTTATTTTATTTTCTCATTTTATGGCC
CTTTGAGCTTCAAAGCCTGTTTTGCCAAGCTGACAAAGCTTGGAAGAATC
TTTAGGGTATCAAATAGTTTTTTAATTAATCATTTTGGCTAAGAGAGCTT
ACAAAGTCAATTTTACTGTTTCTTATTTGTGAAAGCTGATTGTGCAGTCT
GATAGTGCTTAAAGAAGAGTAGAAAATGGGATGATTTGATAATTTAGTTT
GACTTTTAGTCCCCTAAAAATGCCTGATATGTCTTCAGAAATGCATTATT
TTAAGCTAAAATTTAAATAAAAAGTTTTTGGCTGTTTTCTATTGTAGATC
TTTCCCAGCTTGGCAAAAACTGCTTTTGAAATCCCATATAAACTATATAA
CCAGATATTACTACCTAAATATACTACTTGGAAAGGTGGAAGAAAAAAGC
AATTTTGCTGCTTTTCACTGCTGAGAAATTGATTCTTTGTTTCATAGCTC
ATTCTATAATGTAATCCCTTTGTAAACAGCTTGAAAAGCTATCTTCCTGC
ATCCAATATTTTCTCCAGAGACCTGGTAACACTATTTCTTCTGTTCTTAG
GCTTTTCTATTGTAATGGCATCATTGTGGCCCTTTTTACAAAAAGTAAGA
AAGTACTAGATTTTATTCTAATTATCATTTCACTGAACTTTATTCCAAAC
CAATTTATGCTGCCTTAAAAAGTGAAAGAAAAAAAGGTTTAATAAAATCC
TAAAAGATTTTGAGATAAAGAGGTCCCCAAAAAAACCTTTTCTCAATAAA
AATGGCTAGAATTTCTTATGGTTTTGACTAACTGATGTAATGGTGATCGC
TCACTTTTTGCAAACTACCTCTTGAGCCCTTGCCGAGTCCAGCTATATTG
TAGGCTGTCTAAAACAAAAGCCTTCGTCTACTTAAGTGCAAATTTATAAG
GAAAACGTTTTGTAAAAAGAATTATCTTCCCATTACAAAAGGTCTTTTTA
ATTTTTACTCTAGCACTTGGGTCACACAAAACCTCCAAGCCATGATTTAA
TTATAGCCAAAATTTGTTCGGGAAATGGGTGTTACCATATGAGAAGAGGT
ACATCACCTATAAATCTTTCTCTTTATAACATTTTTAAGCTTGACCACGA
AGTGTCCGAATCATTTCTTGGTTGGGTCAATGCTGGATACAGTTTTGCGC
AAATGGTGTCCGGCATTTTCATGGGCTATTGGTGCGAGAAAAGGAATGCA
AAAGAGCCAATCTTTGTGTCCATCATTTTGCTTGCTGGAGGCAGTCTACT
TTATTCTTATGCTGAGACGTTCGGTAAGAAGGGAATTTGGGTGGTCCTTG
GAGGTAGAGTGTTGCTTGGTACCAGTGCAGGTAAATTTAAACCTCTTTTC
CTTGCTTTATATTTTCTACTTCAAATGACATTCGAATCATACTGCTTTTG
ACAAGTTTTTTTCAAATGATCACTAACGACTATCCAAGGTTTTGGATCGT
CACCCTTGACCATTGTTTTATTACATTTTCAGGTGTTGTAGCAGTTTCCA
GAGCTGTTGGAGCACAACTGTCAACGTTAGAAGAACGTTCAGGAGTTATG
GCACAATTAGCTTTATGGCAAGCTATCGGTTTCTCAATAGGTCCAGGTAT
AGCTACTCAGAGTTAAGCTCTGTTGAAAGATTTTAATGTACTGTATTATA
ATTTATCCAATATTCATTCTTGAATGAGTTAAATATTTCTACTGTTTTAC
CGGATTGTGATGGACATAGAACATTTGCTGATGAAAGCCTATTAAAATTA
TAGTGGATGGACTATACAGCCATGTGAATCCAGATTGGAATATGAGGAAA
CTGAAAAATAAGACACCAGTACCTGGCGATTCAGTGCAAAAATACTTAAT
GTACTTGCACCACTTCCTTCCTTTTACCTTTCTGCTGTTCTTTCTTTCAG
CTTTTCAAGCTATGGCCAAACCAATAGGATCAAACGAATATGAGATCAAA
GCCATCAAGATGTACATCAACGTTTTCACGTTACCTGGTTTCTTCATGAT
AATTCTCAGCATCATCAACTTTGTACTTGTTGCTCTTTACTTTAAAGAAA
ATGTCCATGCTAAAGAGAAAATGAAAAAAGAAAGTCGCCGCTTAAGAAGA
CGTAAGCATGATTTTTGATCAGGGCTTCCAACCCTCTTTGACCATCTGAT
GTGAGAGCTTTTAAGCCTAAGGAAAGTTTTCTTCTTTTGAATTTGGTATA
TTGTTTCCTATTTTTAAGAACAGTTAATAGTATAAAGTAATAATGCCATG
GCAGCTTGTTTTATGAGCTGAAAAAACTTGTGTGAAAGCACACTTATTGA
CGCTATTATCACGGTCTATATCCCTTGTCATTTAGAATCGACTTCATTTG
AGCCGCTTGACACAACGATTGTCTTTACTTGTCTTTTGCTCTGGTTCATC
GCTCTCTCCATATTCGCTCTCAATGAAACGTAAGTCAAACTTATTGGTGG
AGTCACAGCAAATTTAAATGACTGCCTTCTACAGATATCATGTTCGCTTT
ATTCTTTTGTTTATATTCCCGTTGCATCAAATTAAGTAATGCTTTGTAGA
GTTTAAACTCTCAACTGATGTTCATTTATATCTTTCTTCAGGATTTTATC
ACCAGTTGTGATGAACGAGTATGCATGGACACGCAAACAGACAGTCTTCA
ACACATCCATACTTCTTTCTGTGGCTGGTGTCATTGCTATCATCTGTTTC
CTCGCCATCGCACCTCTCGAGAAAAAGTAAATACGATGAACATTATTCGC
TTGGTTTTATTGTGTGTGAGAGCCGGAGTTAAATAGCAATGATTTTATGT
CAATCAGCTTTCTCTTTCATAGGAAATGTTTCAATTTATTTCTTTTCAGG
TTTGGCGGGAAGAATGTTTTGGCTTTTGGGTATTTCTTAATGTTGGTTGG
TTTTGTTATCTATTTGCCCTGGGGCCCAGGTTACCCAAAACTCACTCATG
AAGGTAAAACTGTTAATTATTATTATCTCTAACTATAGTCATCTCCATCA
TAACTTCTTAACACCATTTTGTGTATTGATTCGTGATACATTGACATAAA
ATTCTGTTTGTTAGTAATAAACTACTAATCTTATTACTATTGGACAGTGT
TGAATTTCCAAAATGGTACCCAAGTAGTGAACGAAGTGGTTGAAGGAGAC
GGAGGTTGCCCATATCACTACGACTGGTGTAGAAATACTCCCAAATTACA
TTTTGCACAGTTCCTCACTGCTGCTACACTCGTCGGGATTGGATACCCAA
TAGCTGCAGTTTTGCTAAGTACACTTTACTCCAAAGTGATTGGCCCATTC
CCACAGGTATGCAGAATAGACTTTTAAACTTTTATCAAAATTCTCAATTT
CAAGCTCCTAGCCTTTGCTCCTGCTTTTGTTTGTATACAATCTCTGAAAT
ATATCCTATTTCTCTTTCAGGGTAAATATATGGGATGGTTGACAGGGACA
GGTAGTTTAGCCCGTGTAGTTGGTCCTATCTACGTGACAGCTGTCTATCA
GAAGGGTGGTATTCGTTGGACGTCTGTCAGTATTTGCTTGCTCCTGACCA
TCACCATGTGTATTTTTGCATTCTTTTGGAAGAGACTTGTTCCTTATAAT
GAAAGGTTCAGAACTAAATCACGTCTGTCAAGCGTTACTGCTTAAACCTG
AAGAATTTATTTGCTGTTTGGTAGCCTGGAAGGAATGAAATCTTCTATTT
ATTCATTGGTAAACTAATTGGTGCACGTTTTATGTGCAGGCTATTTGGTT
TGACTTGAAATCAAAAACCTAAATTTGACCCGAACCATGTTTAAATGAAG
GGATGTGTTCCAAACAAAAGTCAGCAGCGAATGTTTCATTCTAAACAACA
CGAGACACTCGATATAAGGTGCAAATCAGTTGGTTGACTCTTCCCCTGGT
TTGAGTTCTAGTAAAATAAATCATGTCAGATGGTAGCTGACATGGACACC
ATTTGACCAATGTGTCAAGTAAACAATAAATAGATAATTTTATAAAAAAT
GATGTCTGTAAATTTTATATTATAAGAAATTTGAATTTAAACTCCTTATT
CACGATGATGTTGAGGTCAGAAAATTATTTTGATAAAATTTTATTTAAAT
TAATAATATGATTTTATACATGTTAAACATGTTAACATTTACCTTTTCAT
AATAGCTAGTATACTTTTTCAACGTTTATTCGTTTATATCCATNAAAATT
TTGGACAAGTAATTTACTTTTTTCATAATAGCTAGTATACTTTTTACACG
TTTATTCGTTTATATCCACATGGCCTATCAATATTTTTTAATGAATTTTA
ATTTATTTTACTTTTTGATATGTTTGAATACACCTTTATAACAATTACTT
TTGATTTTGTAACATCAGTGAGCTGAATTGAACAACCATGGTTGTGCTCT
ACCGGGGGAGGAGGTTTACTCAGGCAACTTTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_030121	XLOC_030121	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_124	supercontig	scaffold_124:75342..80173 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.1872	12.9562	7.3617	5.66026	24.4469	20.4615	17.3174	19.6654	19.5355	20.1396	17.4221	14.6793	16.7348	15.368	16.5371	19.2272	22.2665	24.893	16.9131	21.6744	22.0409	20.1744	35.1494	33.7986	10.8642	10.8643	17.3459	13.2452	37.2039	33.7503

Blast

[Close]

BLAST of TCONS_00047283 vs. Swiss-Prot (Human)
Match: MFSD8 (Major facilitator superfamily domain-containing protein 8 OS=Homo sapiens GN=MFSD8 PE=1 SV=1)

HSP 1 Score: 307.375 bits (786), Expect = 2.210e-94
Identity = 177/483 (36.65%), Postives = 265/483 (54.87%), Query Frame = 1

Query:  148 KERKRSIRVIYANAFIGSISFSIVMASLWPFLQKLDHEVSESFLGWVNAGYSFAQMVSGIFMGYWCEKRNAKEPIFVSIILLAGGSLLYSYAET-------------------FGVVAVSRAVGAQLSTLEERSGVMAQLALWQAIGFSIGPAFQAMAKPIGSNEYEIKAIKMYINVFTLPGFFMIILSIINFVLVALYFKENVHAKEKMKKESRRLRRQSTSFEP-------LDTTIVFTCLLLWFIALSIFALNETILSPVVMNEYAWTRKQTVFNTSILLSVAGVIAIICFLAIAPLEKKFGGKNVLAFGYFLMLVGFVIYLPWGPGYPKLTHEVL-NFQNGTQVVNEVV--------EGDG----GCPYHYDWCRNTPKLHFAQFLTAATLVGIGYPIAAVLLSTLYSKVIGPFPQGKYMGWLTGTGSLARVVGPIYVTAVYQKGGIRWTSVSICLLLTITMCIFAFFWKRLVPYNERF 1479
            K R RSIR++Y   F+ S+ FS+VM S+WP+LQK+D     SFLGWV A YS  QMV+    G W   R  KEP+ VSI++    + LY+Y                       G VAV R+  A  ++L+ER+  MA +++ QA+GF +GP FQ     +G        IK+ IN++T P      L I+N +L+    +E  H  +   ++ + +  +  S +        +D   V    +L+F+ L IFAL ETI++P+ M+ YAWT++Q V    I+L+  GV A++ FL +  L KK G + +L  G  ++ VGF I LPWG  +PK+  E L N         E++        E D     GC     WC  TP +H AQFLT+A L+G+GYP+  ++  TLYSK++GP PQG YMGWLT +GS AR++GP++++ VY   G RW    +C ++ +T+ +    +KRL+  + R+
Sbjct:   33 KSRWRSIRILYLTMFLSSVGFSVVMMSIWPYLQKIDPTADTSFLGWVIASYSLGQMVASPIFGLWSNYRPRKEPLIVSILISVAANCLYAYLHIPASHNKYYMLVARGLLGIGAGNVAVVRSYTAGATSLQERTSSMANISMCQALGFILGPVFQTCFTFLGEKGVTWDVIKLQINMYTTPVLLSAFLGILNIILILAILRE--HRVDDSGRQCKSINFEEASTDEAQVPQGNIDQVAVVAINVLFFVTLFIFALFETIITPLTMDMYAWTQEQAVLYNGIILAALGVEAVVIFLGVKLLSKKIGERAILLGGLIVVWVGFFILLPWGNQFPKIQWEDLHNNSIPNTTFGEIIIGLWKSPMEDDNERPTGCSIEQAWCLYTPVIHLAQFLTSAVLIGLGYPVCNLMSYTLYSKILGPKPQGVYMGWLTASGSGARILGPMFISQVYAHWGPRWAFSLVCGIIVLTITLLGVVYKRLIALSVRY 513

The following BLAST results are available for this feature:

BLAST of TCONS_00047283 vs. Swiss-Prot (Human)

BLAST of TCONS_00047283 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
MFSD8	2.210e-94	36.65	Major facilitator superfamily domain-containing pr...	[more]

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TCONS_00047283 (transcript) - C. hemisphaerica