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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00047111 ID=TCONS_00047111|Name=TCONS_00047111|organism=Clytia hemisphaerica|type=transcript|length=1189bp
GGCACGTGTGCCCGAGGTCAATATTTTCCAGAGAGACAGGCTTACTGAGG
TTAATAATCCATTTATAGCCATgcaaaataaagtaataaaaataattaac
aagtgtattctattgttctacaTCGTAAAAATTAACATTCTAAAGATGTT
AATTTCATAACTGGTCACTATGGGGAAATATCAACCGGCCACGTGACATC
AATTATCCAAtcagttttctcaaaaatgattgacagttgtattgcagggc
tataacaggaattattcaatggctgtttttgcctacgggTATATaataaa
gtaaaatatttccattttgAATAACTTAAATTATCTTTCTTTAATGAACA
AAAATAATATTCATTAAAGGtgttctaaaataaaaaaaaatccaatttta
aaaaattcccgtTTTCTATACATAAACAGTGCCAATTAAATCCTCCAGCA
TTCAAAGTTAGTCTGTAGTTAACTCGACATTTTAATCCAAAGCTTTCATT
TTAATGACAACATTTGATGGACCAATCAGAATAAGCTAAAAGCATTAACA
TAACTTTCTTATCGGTGACCATAACCATATATCATTTTTCTCCACTGTGT
GTATTTTCTTTAAATGAACTCAAAATTTACTGTTGTTAAATCAGATATGT
CAGCCATTTTTAAAAGCCATTATTGACAAATCTGACGCGCCTGGTTCCTT
TTGTAACCAGATGATCAACCAGCCCAGTAGCGATTATCAACTCTTCCAAT
AGGGCCACGTTACTCCATCATAAATCATTCTGCAAACCCAGATTCAAAGA
TTAATCTTCAGTATTAATAATAATCTGGATTACAAAACCCTTAGAAATTT
TTGTATCTGCGATCGTCAACTTATCATAAAGTAATTTGCCAGCGAAGAAA
CAGCGTTGTTTACTAGGCGGAAAATTATGATCAGCCTGGACGCGTTTTTT
GATAGAGCTTATAGTTTCGCCAGTACGAACGTTCATTTTAATGTCTTTTT
GTTGTGTTGAAAGTCTTATTTTGATGAGCATGTCTTCACCAGAAGCTTGC
TCTGCTATGTTCTCTTTCGACCCATCTGACGTCACATTTTCGTCATCACT
GGCGATCAGATTGGTTGGAAGGCTTATACAATATACAGGGATGACGTAAT
GATTACCTAGCTCGTCATATGCGTCTGCTAGTGaccctg Run BLAST on NCBI transcript from alignment at scaffold_121:95137..96381- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00047111 ID=TCONS_00047111|Name=TCONS_00047111|organism=Clytia hemisphaerica|type=transcript|length=1245bp|location=Sequence derived from alignment at scaffold_121:95137..96381- (Clytia hemisphaerica)
GGCACGTGTGCCCGAGGTCAATATTTTCCAGAGAGACAGGCTTACTGAGG
TTAATAATCCATTTATAGCCATGCAAAATAAAGTAATAAAAATAATTAAC
AAGTGTATTCTATTGTTCTACATCGTAAAAATTAACATTCTAAAGATGTT
AATTTCATAACTGGTCACTATGGGGAAATATCAACCGGCCACGTGACATC
AATTATCCAATCAGTTTTCTCAAAAATGATTGACAGTTGTATTGCAGGGC
TATAACAGGAATTATTCAATGGCTGTTTTTGCCTACGGGTATATAATAAA
GTAAAATATTTCCATTTTGAATAACTTAAATTATCTTTCTTTAATGAACA
AAAATAATATTCATTAAAGGTGTTCTAAAATAAAAAAAAATCCAATTTTA
AAAAATTCCCGTTTTCTATACATAAACAGTGCCAATTAAATCCTCCAGCA
TTCAAAGTTAGTCTGTAGTTAACTCGACATTTTAATCCAAAGCTTTCATT
TTAATGACAACATTTGATGGACCAATCAGAATAAGCTAAAAGCATTAACA
TAACTTTCTTATCGGTGACCATAACCATATATCATTTTTCTCCACTGTGT
GTATTTTCTTTAAATGAACTCAAAATTTACTGTTGTTAAATCAGATATGT
CAGCCATTTTTAAAAGCCATTATTGACAAATCTGACGCGCCTGGTTCCTT
TTGTAACCAGATGATCAACCAGCCCAGTAGCGATTATCAACTCTTCCAAT
AGGGCCACGTTACTCCATCATAAATCATTCTGCAAACCCAGATTCAAAGA
TTAATCTTCAGTATTAATAATAATCTGGATTACAAAACCCTTAGAAATTT
TTGTATCTGCGATCGTCAACTTATCATAAAGTAATTTGCCAGCGAAGAAA
CAGCGTTGTTTACTAGGCGGAAAATTATGATCAGCCTGGACGCGTTTTTT
GATAGAGCTTATAGTTTCGCCAGTACGAACGTTCATTTTAATGTCTTTTT
GTTGTGTTGAAAGTCTTATTTTGATGAGCATGTCTTCACCAGAAGCTTGC
TCTGCTATGTTCTCTTTCGACCCATCTGACGTCACATTTTCGTCATCACT
GGCGATCAGATTGGTTGGNCTTTCGACCCATCTGACGTCACATTTTCGTC
ATCACTGGCGATCAGATTGGTTGGAAGGCTTATACAATATACAGGGATGA
CGTAATGATTACCTAGCTCGTCATATGCGTCTGCTAGTGACCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00047111-exon-scaffold_121-1575043694:95297..96381 | TCONS_00047111-exon-scaffold_121-1575043694:95297..96381 | Clytia hemisphaerica | exon |
| TCONS_00047111-exon-scaffold_121-1575043694:95137..95240 | TCONS_00047111-exon-scaffold_121-1575043694:95137..95240 | Clytia hemisphaerica | exon |
| TCONS_00047111-exon-scaffold_121-1510915933:95297..96381 | TCONS_00047111-exon-scaffold_121-1510915933:95297..96381 | Clytia hemisphaerica | exon |
| TCONS_00047111-exon-scaffold_121-1510915933:95137..95240 | TCONS_00047111-exon-scaffold_121-1510915933:95137..95240 | Clytia hemisphaerica | exon |
| TCONS_00047111-exon-scaffold_121-1491911889:95297..96381 | TCONS_00047111-exon-scaffold_121-1491911889:95297..96381 | Clytia hemisphaerica | exon |
| TCONS_00047111-exon-scaffold_121-1491911889:95137..95240 | TCONS_00047111-exon-scaffold_121-1491911889:95137..95240 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_121 | supercontig | scaffold_121:95137..96381 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
| GO:0043130 | ubiquitin binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
| molecular_function |
GO:0043130 |
ubiquitin binding |
Blast
BLAST of TCONS_00047111 vs. Swiss-Prot (Human)
Match: UBTD1 (Ubiquitin domain-containing protein 1 OS=Homo sapiens GN=UBTD1 PE=1 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 1.539e-24 Identity = 49/125 (39.20%), Postives = 77/125 (61.60%), Query Frame = -3
Query: 813 GSLADAYDELGNHYVIPVYCISLPTNLIASDDENVTSDGSKENIAEQASGEDMLIKIRLSTQQKDIKMNVRTGETISSIKKRVQADHNFPPSKQRCFFAGKLLYDKLTIADTKISKGFVIQIIIN 1187
G+L + YDELGN Y +P+YC+S P NL+ E+ + + + + +K+RLST KD++++ +T+ +K+++ A PS QR FF+GKLL D+ + +TKI K FVIQ+IIN
Sbjct: 100 GTLCECYDELGNRYQLPIYCLSPPVNLLL---EHTEEESLEPPEPPPSVRREFPLKVRLSTG-KDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLLTDRTRLQETKIQKDFVIQVIIN 220
The following BLAST results are available for this feature:
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