TCONS_00047111 (transcript) - C. hemisphaerica

Overview
NameTCONS_00047111
Unique NameTCONS_00047111
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1189

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00047111 ID=TCONS_00047111|Name=TCONS_00047111|organism=Clytia hemisphaerica|type=transcript|length=1189bp
GGCACGTGTGCCCGAGGTCAATATTTTCCAGAGAGACAGGCTTACTGAGG
TTAATAATCCATTTATAGCCATgcaaaataaagtaataaaaataattaac
aagtgtattctattgttctacaTCGTAAAAATTAACATTCTAAAGATGTT
AATTTCATAACTGGTCACTATGGGGAAATATCAACCGGCCACGTGACATC
AATTATCCAAtcagttttctcaaaaatgattgacagttgtattgcagggc
tataacaggaattattcaatggctgtttttgcctacgggTATATaataaa
gtaaaatatttccattttgAATAACTTAAATTATCTTTCTTTAATGAACA
AAAATAATATTCATTAAAGGtgttctaaaataaaaaaaaatccaatttta
aaaaattcccgtTTTCTATACATAAACAGTGCCAATTAAATCCTCCAGCA
TTCAAAGTTAGTCTGTAGTTAACTCGACATTTTAATCCAAAGCTTTCATT
TTAATGACAACATTTGATGGACCAATCAGAATAAGCTAAAAGCATTAACA
TAACTTTCTTATCGGTGACCATAACCATATATCATTTTTCTCCACTGTGT
GTATTTTCTTTAAATGAACTCAAAATTTACTGTTGTTAAATCAGATATGT
CAGCCATTTTTAAAAGCCATTATTGACAAATCTGACGCGCCTGGTTCCTT
TTGTAACCAGATGATCAACCAGCCCAGTAGCGATTATCAACTCTTCCAAT
AGGGCCACGTTACTCCATCATAAATCATTCTGCAAACCCAGATTCAAAGA
TTAATCTTCAGTATTAATAATAATCTGGATTACAAAACCCTTAGAAATTT
TTGTATCTGCGATCGTCAACTTATCATAAAGTAATTTGCCAGCGAAGAAA
CAGCGTTGTTTACTAGGCGGAAAATTATGATCAGCCTGGACGCGTTTTTT
GATAGAGCTTATAGTTTCGCCAGTACGAACGTTCATTTTAATGTCTTTTT
GTTGTGTTGAAAGTCTTATTTTGATGAGCATGTCTTCACCAGAAGCTTGC
TCTGCTATGTTCTCTTTCGACCCATCTGACGTCACATTTTCGTCATCACT
GGCGATCAGATTGGTTGGAAGGCTTATACAATATACAGGGATGACGTAAT
GATTACCTAGCTCGTCATATGCGTCTGCTAGTGaccctg
Run BLAST on NCBI

transcript from alignment at scaffold_121:95137..96381-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00047111 ID=TCONS_00047111|Name=TCONS_00047111|organism=Clytia hemisphaerica|type=transcript|length=1245bp|location=Sequence derived from alignment at scaffold_121:95137..96381- (Clytia hemisphaerica)
GGCACGTGTGCCCGAGGTCAATATTTTCCAGAGAGACAGGCTTACTGAGG
TTAATAATCCATTTATAGCCATGCAAAATAAAGTAATAAAAATAATTAAC
AAGTGTATTCTATTGTTCTACATCGTAAAAATTAACATTCTAAAGATGTT
AATTTCATAACTGGTCACTATGGGGAAATATCAACCGGCCACGTGACATC
AATTATCCAATCAGTTTTCTCAAAAATGATTGACAGTTGTATTGCAGGGC
TATAACAGGAATTATTCAATGGCTGTTTTTGCCTACGGGTATATAATAAA
GTAAAATATTTCCATTTTGAATAACTTAAATTATCTTTCTTTAATGAACA
AAAATAATATTCATTAAAGGTGTTCTAAAATAAAAAAAAATCCAATTTTA
AAAAATTCCCGTTTTCTATACATAAACAGTGCCAATTAAATCCTCCAGCA
TTCAAAGTTAGTCTGTAGTTAACTCGACATTTTAATCCAAAGCTTTCATT
TTAATGACAACATTTGATGGACCAATCAGAATAAGCTAAAAGCATTAACA
TAACTTTCTTATCGGTGACCATAACCATATATCATTTTTCTCCACTGTGT
GTATTTTCTTTAAATGAACTCAAAATTTACTGTTGTTAAATCAGATATGT
CAGCCATTTTTAAAAGCCATTATTGACAAATCTGACGCGCCTGGTTCCTT
TTGTAACCAGATGATCAACCAGCCCAGTAGCGATTATCAACTCTTCCAAT
AGGGCCACGTTACTCCATCATAAATCATTCTGCAAACCCAGATTCAAAGA
TTAATCTTCAGTATTAATAATAATCTGGATTACAAAACCCTTAGAAATTT
TTGTATCTGCGATCGTCAACTTATCATAAAGTAATTTGCCAGCGAAGAAA
CAGCGTTGTTTACTAGGCGGAAAATTATGATCAGCCTGGACGCGTTTTTT
GATAGAGCTTATAGTTTCGCCAGTACGAACGTTCATTTTAATGTCTTTTT
GTTGTGTTGAAAGTCTTATTTTGATGAGCATGTCTTCACCAGAAGCTTGC
TCTGCTATGTTCTCTTTCGACCCATCTGACGTCACATTTTCGTCATCACT
GGCGATCAGATTGGTTGGNCTTTCGACCCATCTGACGTCACATTTTCGTC
ATCACTGGCGATCAGATTGGTTGGAAGGCTTATACAATATACAGGGATGA
CGTAATGATTACCTAGCTCGTCATATGCGTCTGCTAGTGACCCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030036XLOC_030036Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00047111-exon-scaffold_121-1575043694:95297..96381TCONS_00047111-exon-scaffold_121-1575043694:95297..96381Clytia hemisphaericaexon
TCONS_00047111-exon-scaffold_121-1575043694:95137..95240TCONS_00047111-exon-scaffold_121-1575043694:95137..95240Clytia hemisphaericaexon
TCONS_00047111-exon-scaffold_121-1510915933:95297..96381TCONS_00047111-exon-scaffold_121-1510915933:95297..96381Clytia hemisphaericaexon
TCONS_00047111-exon-scaffold_121-1510915933:95137..95240TCONS_00047111-exon-scaffold_121-1510915933:95137..95240Clytia hemisphaericaexon
TCONS_00047111-exon-scaffold_121-1491911889:95297..96381TCONS_00047111-exon-scaffold_121-1491911889:95297..96381Clytia hemisphaericaexon
TCONS_00047111-exon-scaffold_121-1491911889:95137..95240TCONS_00047111-exon-scaffold_121-1491911889:95137..95240Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_121supercontigscaffold_121:95137..96381 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.0443924	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019956Ubiquitin
IPR000626Ubiquitin_dom
IPR032752UBD
IPR029071Ubiquitin-rel_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0043130ubiquitin binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
molecular_function GO:0043130 ubiquitin binding
Blast
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BLAST of TCONS_00047111 vs. Swiss-Prot (Human)
Match: UBTD1 (Ubiquitin domain-containing protein 1 OS=Homo sapiens GN=UBTD1 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 1.539e-24
Identity = 49/125 (39.20%), Postives = 77/125 (61.60%), Query Frame = -3 
Query:  813 GSLADAYDELGNHYVIPVYCISLPTNLIASDDENVTSDGSKENIAEQASGEDMLIKIRLSTQQKDIKMNVRTGETISSIKKRVQADHNFPPSKQRCFFAGKLLYDKLTIADTKISKGFVIQIIIN 1187
            G+L + YDELGN Y +P+YC+S P NL+    E+   +  +      +   +  +K+RLST  KD++++    +T+  +K+++ A     PS QR FF+GKLL D+  + +TKI K FVIQ+IIN
Sbjct:  100 GTLCECYDELGNRYQLPIYCLSPPVNLLL---EHTEEESLEPPEPPPSVRREFPLKVRLSTG-KDVRLSASLPDTVGQLKRQLHAQEGIEPSWQRWFFSGKLLTDRTRLQETKIQKDFVIQVIIN 220
The following BLAST results are available for this feature:
BLAST of TCONS_00047111 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBTD11.539e-2439.20Ubiquitin domain-containing protein 1 OS=Homo sapi... [more]
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