TCONS_00047004 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00047004
Unique Name	TCONS_00047004
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1642

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_120:191261..195284+

transcript sequence

>TCONS_00047004 ID=TCONS_00047004|Name=TCONS_00047004|organism=Clytia hemisphaerica|type=transcript|length=1642bp
ttcaaattttttctggaaaagcccaacaGAGCCCAATTcgatgtcttctt
ttttcaaaaaaagatatatctagactctctaccttcattCATAGAGTGCA
ATTTCATTTATAATTTCAGATTGAACAATATAATTGTctaaaaattataa
gaaagGAAAAATGACTACACTTCTAATGCCACTTGCATCTGCAAGATCTC
TTCTACCACCTTTTGTCATATTTGGTGTCACACCCCACTATTACATCAGT
AGCACATGCCTACGACTGATGAAATTTGCTTTACCACAAGACACTTATGA
GAAGATTGATCACATGATGTATCACAGTTATCAATCATTAGTAActtact
tttttgagacctacACTGGAACAAAGGTATACTTTTATGGCGAAGATCTT
CCTACAGACACTACTGAGAATGTTTTATATATCTGCAACCATCAATCTGC
AAttGATTGGTCTTTGGCAAATTTTGTTGGTATTCGTCAGAACTCAATTG
GTCAAATCAGATATGTAATGAAAGAACTGCTGAAATATTTACCTTTCTTT
GGTCCTTATTTCATGCAGCACGGTTGCATATTTGTTCGACGTGATGGAAA
ACAAGACACAGAGCTGAGAAGTATTGGATTGTGATATTTCCTGAGGGTAC
TCGATATACTTCAAAGAAGAAAGCTTTGATTGAAAAGAGCGAACAAGCTG
CACTAGCTGCAGGTTATGAACCATTTCAAAATGTACTATTTCCTAGAACT
AAAGCCTTTGAGtTATCACTCGAGTACTTGGGGGACTTGGACGCAGTGTA
CGATTTAACAATCGCTTTTAAAATCCCATGGTTACCTTTGAAGTCGAAAC
AACTTGGACCTAGTTTGCTAGAGTTTGTGTCAATTTTTGGGAGGGAAGTT
CACATGCATTTTCGAAGAATACCAGCAAAACAAATAGACGGAAGTGCGGA
ACAAAGGAAAAAATGGCTCTATGATACCTTCAAGGAAAAAGACAGGCTGC
TGGACCATTTTTACAACCTTCAATCTGGTGGGACGTTCCCCGGTGAACAG
CGAGAAGTTCCTTTGAAGCAACACCAAGTATATCCGTATGCCTTTTTCTA
TTCTGCTTTACTGGGCGTCACTTTAGCTACTGAAACAGGGCGGTATTACT
ATGCCAAAGCGTGGCAATTTGGTGCCATCACTTGGATACTTACGCCATTG
CTGTATCGAATTTCTGAACTTTTGGGATGATCAAATTACATAGTAGCGAG
ATTAAGGAATGTTTGTGACACTAAACGTGTGTCCGTAGCCTAGGAATTTA
ATTGATCTAAAGCAAAACTGCTCAAAAACTAGCCAGTTACTATAAATGTT
ATATGTCATATTCAGCTTTCCTCTAAATTCTTGAAGCTTTACACACCAAA
ACCAAATTATTTCAGTACAAACATGTTAGGCCATAGGTAGTTTgcatata
aaaatcaaaactattTTGGTCTATTCTGAGCTACGTTATTATTTGCCGAT
GCTTATTCGACTTAAAAATTCATTTATTAAGgttaggggccgtccacata
gtacgtacgcactaagggggagagggggagTCAAAAGCGTATgattgcgt
acagggggaggggaagggtcaaaggaaaatgtacgtacgcag

Run BLAST on NCBI

transcript from alignment at scaffold_120:191261..195284+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00047004 ID=TCONS_00047004|Name=TCONS_00047004|organism=Clytia hemisphaerica|type=transcript|length=4024bp|location=Sequence derived from alignment at scaffold_120:191261..195284+ (Clytia hemisphaerica)
ttcaaattttttctggaaaagcccaacaGAGCCCAATTcgatgtcttctt
ttttcaaaaaaagatatatctagactctctaccttcattCATAGAGTGCA
ATTTCATTTATAATTTCAGATTGAACAATATAATTGTctaaaaattataa
gaaagGAAAAATGACTACACTTCTAATGCCACTTGCATCTGCAAGATCTC
TTCTACCACCTTTTGTCATATTTGGTGTCACACCCCACTATTACATCAGT
AGCACATGCCTACGACTGATGAAATTTGCTTTACCACAAGACACTTATGA
GAAGATTGATCACATGATGTATCACAGTTATCAATCATTAGTAActtact
tttttgagacctacACTGGAACAAAGGTAAGTAGATTTCAAAGATTCAAA
ACAAGactaaattttcaagttttcaaaacTAAATAAAACCAAGAGATACA
ATATTGGTGAAAGAGTTTCAAAATcctgaatgaaaaaagaaatttgaatt
gaaGATGATTGTTGAATAAGTTCAAactattattgtttttatttaatttt
aagtaGAGAATACATTACATTATTATTAACCCTATATCTTTGATGTCAAA
ATGAAGAATGAATCTCCCTTGATAGAAATTatttaccttattacacaaat
attactaggaaagtatttaacggccttgaatATGACACAATCtgaaatta
acacaaatttttcTGCGTTTTTAAGGAGAcagcggctggttttaattaag
ggggtttttattaacacaaaatttttcaattcgtgttaataaaatgacta
gtaatatttgtgtaataaggtatatcATAACAGCTAAAGTAAGTGTTTAA
TGTAAGTAAtaattcaatttcttttgtaaTATTGTCGgggaaaatcaaaa
tataatagccgcattctttttcaccgttcaacacattcaatttcttttgc
AGGTATACTTTTATGGCGAAGATCTTCCTACAGACACTACTGAGAATGTT
TTATATATCTGCAACCATCAATCTGCAAGTAATTTGattcagaattttga
aaatatgcttaatattttcactttacTCTATAAGGGAATACAGTTTAACA
AAAATAAGtactattttttttaaatcaattttttgtataaaaagaaGGTT
TGTATAGATTAGTTCAAGGCTTAATAagtcttttctatttttcttttgaa
ttttagttGATTGGTCTTTGGCAAATTTTGTTGGTATTCGTCAGAACTCA
ATTGGTCAAATCAGATATGTAATGAAAGAACTGCTGAAATATTTACCTTT
CTTTGGTCCTTATTTCATGCAGGTATGTTTTTATCTTAAGAATTTGTTCC
CTACagtaaaattattcttataactTTTAGTTGCTAAGTTTgatattctt
tctttttaatgacATATTCTAGTTTTCTAAGCAAGATCTATCTATACCTC
TCCAGGCCACATCTTCATtcttcttgaaaaaaattcttttatgTTATTGA
GTTACGTCTATTTCCTTTAGCACGGTTGCATATTTGTTCGACGTGATGGA
AAACAAGACACAGAGCTGAGAAGGTTTGTCGAATTTTAGTCAATTCCAAG
TAAGATCTTTAGCAAAAGAAATTTGGAACTGCATGGAATCATtaactttt
ctttatttttctcattaaaGGAGATGGATACGATTCCATGATGACAGAGT
AAGAGgggtaaatatgctgaaaatttaataaaaatagtTCTATATGAGGT
CCAAGGgctttgaaaaataactattgaTGGTTTGAATTAAACATGAGATT
TGTTGGACTTTTGGCATCTCAAACTCTACGATCGTAATCTTTGGTCCTTT
GTCTTTTAGTATTGGATTGTGATATTTCCTGAGGGTACTCGATATACTTC
AAAGAAGAAAGCTTTGATTGAAAAGAGCGAACAAGCTGCACTAGCTGCAG
GTAAGGgttttattgattaaaaaagaaaccattttcaacaatatttcaaa
atatcttcaGGACATCTTGATCCTTGTATAGAAATCTATACAAAGTAATT
TGTTACAACATTTCTTTCAGGTTATGAACCATTTCAAAATGTACTATTTC
CTAGAACTAAAGCCTTTGAGGTAAGTTGAAATTGTATCACTGTACAAAAA
GGGTTTCCTTTTAAATTATATATAAACTACTTCTGCCACTGCAAAGATTT
GTTGTACTTGTCTTTAGTATTTCGAGatttctcaaaacttttaatGCAGA
TGtatatctttttaacaattcTTATTAATgcagaaaaactgttttatgat
tcatttttttctgtttaagtTATCACTCGAGTACTTGGGGGACTTGGACG
CAGTGTACGATTTAACAATCGCTTTTAAAATCCCATGGTTACCTTTGAAG
TCGAAACAACTTGGACCTAGTTTGCTAGGTAAAATATCAATAATGCTCGG
CTCAGCAATCCCTTTTGCTGCACGACCCtacatttattttgaaaaccaaa
taaAACTCCCTATTAAATGGTAAATAGATAtgattcaatatttttattcg
tAGAAAAATAGACTTCGCATGTTTTTAAAGGCTCCAATTTTCCCTTATGT
GGGGCTTTTgctgaaaatcttttaaaatgggTCTGTTTCTTGCAAAAAGA
CTAAGCTAAGGAGACTCAAGGATTCCGTTTTTTCTGGCAATTTTTGCCGT
TAAAATACATtttatgtttgaattttttgaaatcaaaatattacaagCTT
TCGAAACAGTTTTAAGGCTCAAACTTGACTCACTTACCTGAGTCAAATTA
AGTTTCAGTGAAATTAGCGTTTCAAGAACGAAATATTTTAACTTTGATGA
AATTTCGAGGTTGCGGGCATAAAATCTCGCCCTTTGTAATCTTTATCAAT
TCTTAAATTATTCTGTATGTAACTGTTCATTGGTTTAATATCTTAGAGTT
TGTGTCAATTTTTGGGAGGGAAGTTCACATGCATTTTCGAAGAATACCAG
CAAAACAAATAGACGGAGTAAGTGTgcttagaaaattttaaaatcttaaa
gttttatttaattctaATTATACTTCTAGTCAAAATCAATTTGTTTAATC
TGTCTTTCATCAACGTTATCAAATTCGAAAGCAAAATGGACTTGAGATTA
TATcccaaaaaaaatgtaaatcatTTTTCTCGTTTTTCTTTCAGAGTGCG
GAACAAAGGAAAAAATGGCTCTATGATACCTTCAAGGAAAAAGACAGGTA
TAAACtgttattttaaaaagtttccAAATGCAAATCATTTAAAATCATGC
GTAAGTTTACTAAAGATCTGTAACTGGAactcttcaaataaaaaaagaat
ttgttttgatatcttTCTATACCATAGGCTGCTGGACCATTTTTACAACC
TTCAATCTGGTGGGACGTTCCCCGGTGAACAGCGAGAAGTTCCTTTGAAG
CAACACCAAGTATATCCGTATGCCTTTTTCTATTCTGCTTTACTGGGCGT
CACTTTAGCTACTGAAACAGGGCGGTATTACTATGCCAAAGCGTGGCAAT
TTGGTGCCATCACTTGGATACTTACGCCATTGCTGTATCGAATTTCTGAA
CTTTTGGGATGATCAAATTACATAGTAGCGAGATTAAGGAATGTTTGTGA
CACTAAACGTGTGTCCGTAGCCTAGGAATTTAATTGATCTAAAGCAAAAC
TGCTCAAAAACTAGCCAGTTACTATAAATGTTATATGTCATATTCAGCTT
TCCTCTAAATTCTTGAAGCTTTACACACCAAAACCAAATTATTTCAGTAC
AAACATGTTAGGCCATAGGTAGTTTgcatataaaaatcaaaactattTTG
GTCTATTCTGAGCTACGTTATTATTTGCCGATGCTTATTCGACTTAAAAA
TTCATTTATTAAGgttaggggccgtccacatagtacgtacgcactaaggg
ggagagggggagTCAAAAGCGTATgattgcgtacagggggaggggaaggg
tcaaaggaaaatgtacgtacgcag

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_029990	XLOC_029990	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_120	supercontig	scaffold_120:191261..195284 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.00445	1.48139	0	0	0.967032	0	2.18398	0.403337	0.778356	0.555707	3.87766	1.3041	0.734879	0	1.17062	0.249416	0.505816	0.782531	1.40949	0.450256	0	1.58492	2.6669	1.45827	0.366608	1.18302	0	0.422448	0.658766	1.73994

Blast

[Close]

BLAST of TCONS_00047004 vs. Swiss-Prot (Human)
Match: PLCE (1-acyl-sn-glycerol-3-phosphate acyltransferase epsilon OS=Homo sapiens GN=AGPAT5 PE=1 SV=3)

HSP 1 Score: 144.05 bits (362), Expect = 1.099e-57
Identity = 68/155 (43.87%), Postives = 102/155 (65.81%), Query Frame = 2

Query:  161 MTTLLMPLASARSLLPPFVIFGVTPHYYISSTCLRLMKFALPQDTYEKIDHMMYHSYQSLVTYFFETYTGTKVYFYGEDLPTDTTENVLYICNHQSAIDWSLANFVGIRQNSIGQIRYVMKELLKYLPFFGPYFMQHGCIFVRRDGK-QDTELRS 622
            + +L++   S R LLP  V+ G  P Y ++    RL+   LP   Y+ +D  +Y  YQS+V +FFE YTG ++  YG DLP +  EN++Y+ NHQS +DW +A+ + IRQN++G +RYV+KE LK+LP +G YF QHG I+V+R  K  + E+R+
Sbjct:    2 LLSLVLHTYSMRYLLPSVVLLGTAPTYVLAWGVWRLLSAFLPARFYQALDDRLYCVYQSMVLFFFENYTGVQILLYG-DLPKNK-ENIIYLANHQSTVDWIVADILAIRQNALGHVRYVLKEGLKWLPLYGCYFAQHGGIYVKRSAKFNEKEMRN 154

HSP 2 Score: 98.9821 bits (245), Expect = 1.099e-57
Identity = 56/193 (29.02%), Postives = 99/193 (51.30%), Query Frame = 1

Query:  625 WIVIFPEGTRYTSKKKALIEKSEQAALAAGYEPFQNVLFPRTKAFELSLEYLGD-LDAVYDLTIAFKIPWLPLKSKQLGPSLLEFVSIFGREVHMHFRRIPAKQIDGSAEQRKKWLYDTFKEKDRLLDHFY---NLQSGGTFPGEQREVPLKQHQVYPYAFFYSALLGVTLATETGRYYYAKAWQFGAITWIL 1191
            ++VIFPEGTRY  ++  ++  S+  A   G    ++VL PR KA  ++ + + + LDA+YD+T+ ++      + ++  P++ EF+     ++H+H  RI  K +    E  ++WL++ F+ KD++L  FY   + +    FPG+     L   +  P     S L    L T+ GR  Y   W +G +   L
Sbjct:  167 YLVIFPEGTRYNPEQTKVLSASQAFAAQRGLAVLKHVLTPRIKATHVAFDCMKNYLDAIYDVTVVYEGKDDGGQRRE-SPTMTEFLCKECPKIHIHIDRIDKKDVPEEQEHMRRWLHERFEIKDKMLIEFYESPDPERRKRFPGKSVNSKLSIKKTLPSMLILSGLTAGMLMTDAGRKLYVNTWIYGTLLGCL 358

The following BLAST results are available for this feature:

BLAST of TCONS_00047004 vs. Swiss-Prot (Human)

BLAST of TCONS_00047004 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
PLCE	1.099e-57	43.87	1-acyl-sn-glycerol-3-phosphate acyltransferase eps...	[more]

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TCONS_00047004 (transcript) - C. hemisphaerica