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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00046784 ID=TCONS_00046784|Name=TCONS_00046784|organism=Clytia hemisphaerica|type=transcript|length=1527bp
AAAAAGAGAAATGTCAAAATGAAGATTGTAGTGGACTTCTCTTTTGCAAC
CAGATGACGTGTCCTGAATGTGGAGTGAAGCAGAAAAAGGTGGGCAAAAC
AGCCATAGATTATAAACCTCTGGGGAAGACATGTCTTACGACGGAGAAGT
ACAGAATTCATGGCAGGCTTATGGGCTTAGAAGAACAACACCACCATCAT
GGATTTGTTGTTTATCTGTCCAAAAATGGAAACGGACATTCAATCGACCA
CAACGAGGAGGGCGCATTCTTTTCGTGGTTCTTGAAAGAGGACAACGAAG
GAAAAAAATTCCTTCCTTACCTAAAGGATCGTTTCGTTGAGTGGTCCAAA
TCTCGACAAGCGAACGAACAAAGCCGCAGCGACGAACAGAACACAGAAAA
CACCAACGGACAAAGCCGCAACGACGAACAGGACATAGAAAACACCAACG
GACAAAACGGCAACGACGAACAGGACATAGAAAACACCAACAGACAAAAC
GGCAACGACGAACTGGACATAGAAAACACCAACGGACAAAACGGCAACGA
CGAACAGGACATAGAAAACACCAACGGACAAAACGGCAACGACGAACAGG
ACATAGAAAACACCAACGGACAAAACGGCAACGACGAACAGGACATAGAA
AACACCAACGGACAAAACGGCAACGACGAACAGGACATAGAAAACACCAA
CGGACAAAACGGCAACGACGAACAGGACATTGAAAACACCAACGTACAAA
ACGGCAACGACGAACTGGACATAGAAAACACCAACGGACAAAACGGCAAC
GACGAACAGGACATAGAAAACACCAACGGACAAAGCGGCAACGACGAACA
GAACATTGAAAACACCAACGGACAAAACGGCAACGACGAACAGGACATAG
AAAACACCAACGGACAAAGCGGCAACGACGAACAGGACATAGAAAACACC
AACGGACAAAGCGGCATCGGCGAACAGAACATAGAAAacaccaaaagaaa
aaaaaagaagtaccCTAAGagagagaagaaaaaacataaGTATGTGACCG
GGTTGGAGAAAGTTGAGGTAGAGGTGGAGCTGGAGGCTTCCATTTGTGAT
CGGAAGTCTCTTGTTGGTAAGTGCGTAGGTCTCCACACCGAAAACCCAAA
TGAATATTGGGTTTTCGGTGTGGAGAAAGTATCTACAAGGGGTGTTTGTG
GTAGTTTTTATGATTGCTTCGATAAAGAAAATAGGCTTTATCAACATCAT
AGTGACAACAACGACAGCTTCTATGCGAATATCATTAGAAGGGGAGAAGA
GCataatgacttcttttttttttatcttgagAAGTCTGAGGAGGGTTACC
AAGTGCCTTATACTGACCATCTTGTCTTGATGGCCAGACTCGAGGAGTTT
GCTCAGTCCTCTCTTTGAGAACGAAATAAGaaggtaaacaaaaaattttc
ccattttggaaatcaagtaaaaaagttttattcGAGAAAACAACCTATCG
TTATGTGGTAGAATTGCTTGCACGTCT Run BLAST on NCBI transcript from alignment at scaffold_117:426563..431345+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00046784 ID=TCONS_00046784|Name=TCONS_00046784|organism=Clytia hemisphaerica|type=transcript|length=4783bp|location=Sequence derived from alignment at scaffold_117:426563..431345+ (Clytia hemisphaerica)
AAAAAGAGGTATGCCTTTTGCTTATACTACATTATTTAATATTTATTATA
ATATTTGTTTTACACCTATTACAAAGTTAGAATGCCTTTACTTTTTTAGA
AAGCAAAGGTAAATCTTTTAAtgattcaaatatattttaaggTTACAGAA
TCAATAACTTCTGTATTTATCTTTAGAAATGTCAAAATGAAGATTGCTCG
CGACTTTTGTCAGTCAACCAAGTGGTTTGTCCTGGCTGCAATTTGAAACA
GAAAAAGGAGAAGAAGAAACTTGCAATGGAGTACACAGTACGAAAAAAAG
GTCAGATTATAGTAGATGTTGACGTGCATCCAAACTAGTACTTATTAAGG
AGTAAAAATTCAAGTTTTTGAGAGATCGTGATGTTTTCATAACCATTTTG
GGCCAATTTGTAATTTAAATCACAATCACGTGACTTCTAAACATGACCTG
TAGATTGACTGTGATAAGAAGATAACTAAAAACCGTCCTAATTTGCAACA
CTTTATTTCCTTTTCTTTCCATTTtatattcttttcaattttagttACAA
AAACCACAATAagtttattctattttttttgattgattgtAATGCCTACT
GTTATTAATACTTTCTGCCATAGTAAAGTCAATATTATTTCATAAGTTGT
ATTTAATTCCTTCACAACGGAGTCAGGACTGAACTTGAAACGCAAAGCAT
AGAGCTGAATGACGAATTGGTTTAATAGcggactgactgactgactgatt
gactgactgactgactgactgactgactgactgactgactgactgactga
ctgactgactgactgactgactgactgactgactgactgactgactgact
ggaGTAACCCCTGGAGtttcttattttattattttcatcgtGAATTGTGG
TATTTATTGTTGAAAGTTAGgtctgatttcaaaatttttatatgtTGTTT
AACATACAGATTTCTTTCCGCCCGCCTTTTAGCCACTAGATGATTTTTTA
TTACCAAATTGAACCATAATATAACATAATTTATCGTTTAAAGTTTATTA
GAATTGATTAGTTGATACAGGTTGATAAATTATTGGTTGCTTATATTTCT
AGAAATGTCAAAATGAAGATTGTAGTGGACTTCTCTTTTGCAACCAGATG
ACGTGTCCTGAATGTGGAGTGAAGCAGAAAAAGGTGGGCAAAACAGCCAT
AGATTATAAACCTCTGGGGAAGACATGTCTTACGACGGAGAAGTACAGAA
TTCATGGCAGGGTAAGAAGAGACTTccgttttaatgaaattttaatgaaa
tcgGGCAACTTTCGTTTTAGCCTGTCCCACATTGAACCATGTAGATATTC
AATAAAACCCTAAAGGCTGTACTCAACCTCGGTCCAGCCAAATCTTCGAC
GgcttttttttggattttagtcCCCAATGAATGGATAAACTTAAAAGATT
CGTTTGACGTCAAATTGCAAAGACTGCAGGCACAGATTTACTTAGATACA
GTATTTTATTTGGTAGGATTTTCTACCAAGGAACAATAGAAGTTCACGTA
ATTAACCCAATGAGAAGCGTCGCGATATTcacctttttttgcttggaaaa
gcttaacCCTATTAGGGGGTGTTTTACACCACGCACGTGCTTTTTCCCTA
ATAACTCctggaaaactttttgaaacacccTGAAATTTTCTGACAATTGA
ctaatataccgggtgcgccacaaaaaagtttctctctttgaaactaattt
tctcgaaatctaaaaattttaaaagaaccattatttttccattggaaaga
agaaagataaagttaagttttgatgggtcatttattgaattcgattcatt
agatcaaaagttatgctcaattgaataaaaaagtctttttcagaaagtgc
tcgaaaacgttaaaaatcgaccccCCACTGCATCAGATTTCATGACTTTT
ATTTATAACATCGGTCATAAACTCCaactaaaatcctttaaaacttaaaa
atcttaaaatgctCATAACTACTTGAATACTTatcaaaattaattaaatt
ttcacaaattttcacaaattttaggTATCAAAAgaggaaattgaaaaaaa
caaaaaaaattcaaaaatatttagacgtcattttctatgacgtcataaat
tttaatcatttttactCTTATTAAGCATTAATTTTAAGGATTAAAATCTT
ATGGTATATTAACAACcagcaaatatgttaaagagtATCCTTTTGGCTTT
CAGTTTCAATTGATCTTTTTGTAAGTGTCATTTTTTCCCTAAATCGCCAA
CAGGTGCCAAATTGGTGATGAAATCTAAGGTTGTCCTTGACAATTTAATA
AAGACTAAAGAGTGGAATCGGTATTTATTTTCTTAGCTTATGGGTTTAGA
AGAACAACACCACCATCATGGATTTGTTGTTGATCTGTCANTTTATTTTC
TTAGCTTATGGGCTTAGAAGAACAACACCACCATCATGGATTTGTTGTTT
ATCTGTCCAAAAATGGAAACGGACATTCAATCGACCACAACGAGGAGGGC
GCATTCTTTTCGTGGTTCTTGAAAGAGGACAACGAAGGAAAAAAATTCCT
TCCTTACCTAAAGGATCGTTTCGTTGAGTGTGAgttatttttattattct
taTTATTATATAGATGTACAGTTTCAGGCACACTTTTGGCTTCTCGAACC
GATTCTAATCTTACACAACTTTGTTGTCAGCATGTTCTCGGCTCTTCGAC
GTTTATTGATGGTGCCATCTAAGATAAGCACCATTGAAATTACCAATAAT
ACCGGGAACGAGGGAAACTCCACAATATGTTCAGGGCTCCTGGTATAAGT
GAATTTTTATAATTCGATATGCACATAATTTGCTCCAAACCCGCTAAATT
AAGTCTCGACCAACTCtaaatattttcatgaattGTCCGATTTTTATAAT
CTAGGCTCGAAAGTACACCTTTTTTAATATATTCACCCTAATTACCTAGT
TTCAACCTAAACATCTTTTATTCGCGAAAATGTTACTTCTCATCCAAATT
AAATCCTGCCTGTTGGTAAGGGGCTAAATCTTAGGATCCTTGACATCTTT
TTTGCGATACAACCAAACCTGGTTCAATTCAAAGAAtaataatttgatga
aaattcgaaGTTGATTGGCTCTCTACTGTACTAATTTAATgtgattaatt
ttcgcgtggattaaatttcgcggattatagcctcatccgcgaaatttaat
cctagTGAAGCTTTGAAAAGAGGCCTTCCGTGAAAATTTATCcatgcaaa
aatttaaaaaaatcttcagatcCGCTATTAAGTTATTCTATAAGTGAAAT
TTAAACCTTCACTCCCCTGACTAGCTAAACAATTGAGACTTTTCAATGAT
TGAATTGCTTTTTAGgacaaaaactatttttagaACTTAGTTCGTTACTG
TTCAAAAATAATTAAGTCAAAGGAAACACAAAAATAAGCCCccgcaaaaa
aattgaaaactcgTCAACCGCGAAACTTAacccccgcgaaaatttatccc
attaaagtatgcaCGGTATTATACGATATATTTTACTTGAATTTTCAGGG
TCCAAATCTCGACAAGCGAACGAACAAAGCCGCAGCGACGAACAGAACAC
AGAAAACACCAACGGACAAAGCCGCAACGACGAACAGGACATAGAAAACA
CCAACGGACAAAACGGCAACGACGAACAGGACATAGAAAACACCAACAGA
CAAAACGGCAACGACGAACTGGACATAGAAAACACCAACGGACAAAACGG
CAACGACGAACAGGACATAGAAAACACCAACGGACAAAACGGCAACGACG
AACAGGACATAGAAAACACCAACGGACAAAACGGCAACGACGAACAGGAC
ATAGAAAACACCAACGGACAAAACGGCAACGACGAACAGGACATAGAAAA
CACCAACGGACAAAACGGCAACGACGAACAGGACATTGAAAACACCAACG
TACAAAACGGCAACGACGAACTGGACATAGAAAACACCAACGGACAAAAC
GGCAACGACGAACAGGACATAGAAAACACCAACGGACAAAGCGGCAACGA
CGAACAGAACATTGAAAACACCAACGGACAAAACGGCAACGACGAACAGG
ACATAGAAAACACCAACGGACAAAGCGGCAACGACGAACAGGACATAGAA
AACACCAACGGACAAAGCGGCATCGGCGAACAGAACATAGAAAacaccaa
aagaaaaaaaaagaagtaccCTAAGagagagaagaaaaaacataaGTATG
TGACCGGGTTGGAGAAAGTTGAGGTAGAGGTGGAGCTGGAGGCTTCCATT
TGTGATCGGAAGTCTCTTGTTGGTAAGTGCGTAGGTCTCCACACCGAAAA
CCCAAATGAATATTGGGTTTTCGGTGTGGAGAAAGTATCTACAAGGGGTG
TTTGTGGTAGTTTTTATGATTGCTTCGATAAAGAAAATAGGCTTTATCAA
CATCATAGTGACAACAACGACAGCTTCTATGCGAATATCATTAGAAGGGG
AGAAGAGCataatgacttcttttttttttatcttgagAAGTCTGAGGAGG
GTTACCAAGTGCCTTATACTGACCATCTTGTCTTGATGGCCAGACTCGAG
GAGTTTGCTCAGTCCTCTCTTTGAGAACGAAATAAGaaggtaaacaaaaa
attttcccattttggaaatcaagtaaaaaagttttattcGAGAAAACAAC
CTATCGTTATGTGGTAGAATTGCTTGCACGTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00046784-exon-scaffold_117-1491911889:426563..426570 | TCONS_00046784-exon-scaffold_117-1491911889:426563..426570 | Clytia hemisphaerica | exon |
| TCONS_00046784-exon-scaffold_117-1510915933:426563..426570 | TCONS_00046784-exon-scaffold_117-1510915933:426563..426570 | Clytia hemisphaerica | exon |
| TCONS_00046784-exon-scaffold_117-1575043694:426563..426570 | TCONS_00046784-exon-scaffold_117-1575043694:426563..426570 | Clytia hemisphaerica | exon |
| TCONS_00046784-exon-scaffold_117-1491911889:427665..427823 | TCONS_00046784-exon-scaffold_117-1491911889:427665..427823 | Clytia hemisphaerica | exon |
| TCONS_00046784-exon-scaffold_117-1510915933:427665..427823 | TCONS_00046784-exon-scaffold_117-1510915933:427665..427823 | Clytia hemisphaerica | exon |
| TCONS_00046784-exon-scaffold_117-1575043694:427665..427823 | TCONS_00046784-exon-scaffold_117-1575043694:427665..427823 | Clytia hemisphaerica | exon |
| TCONS_00046784-exon-scaffold_117-1491911889:429017..429191 | TCONS_00046784-exon-scaffold_117-1491911889:429017..429191 | Clytia hemisphaerica | exon |
| TCONS_00046784-exon-scaffold_117-1510915933:429017..429191 | TCONS_00046784-exon-scaffold_117-1510915933:429017..429191 | Clytia hemisphaerica | exon |
| TCONS_00046784-exon-scaffold_117-1575043694:429017..429191 | TCONS_00046784-exon-scaffold_117-1575043694:429017..429191 | Clytia hemisphaerica | exon |
| TCONS_00046784-exon-scaffold_117-1491911889:430161..431345 | TCONS_00046784-exon-scaffold_117-1491911889:430161..431345 | Clytia hemisphaerica | exon |
| TCONS_00046784-exon-scaffold_117-1510915933:430161..431345 | TCONS_00046784-exon-scaffold_117-1510915933:430161..431345 | Clytia hemisphaerica | exon |
| TCONS_00046784-exon-scaffold_117-1575043694:430161..431345 | TCONS_00046784-exon-scaffold_117-1575043694:430161..431345 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_117 | supercontig | scaffold_117:426563..431345 + |
Blast
The following BLAST results are available for this feature:
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