TCONS_00046784 (transcript) - C. hemisphaerica

Overview
NameTCONS_00046784
Unique NameTCONS_00046784
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1527

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00046784 ID=TCONS_00046784|Name=TCONS_00046784|organism=Clytia hemisphaerica|type=transcript|length=1527bp
AAAAAGAGAAATGTCAAAATGAAGATTGTAGTGGACTTCTCTTTTGCAAC
CAGATGACGTGTCCTGAATGTGGAGTGAAGCAGAAAAAGGTGGGCAAAAC
AGCCATAGATTATAAACCTCTGGGGAAGACATGTCTTACGACGGAGAAGT
ACAGAATTCATGGCAGGCTTATGGGCTTAGAAGAACAACACCACCATCAT
GGATTTGTTGTTTATCTGTCCAAAAATGGAAACGGACATTCAATCGACCA
CAACGAGGAGGGCGCATTCTTTTCGTGGTTCTTGAAAGAGGACAACGAAG
GAAAAAAATTCCTTCCTTACCTAAAGGATCGTTTCGTTGAGTGGTCCAAA
TCTCGACAAGCGAACGAACAAAGCCGCAGCGACGAACAGAACACAGAAAA
CACCAACGGACAAAGCCGCAACGACGAACAGGACATAGAAAACACCAACG
GACAAAACGGCAACGACGAACAGGACATAGAAAACACCAACAGACAAAAC
GGCAACGACGAACTGGACATAGAAAACACCAACGGACAAAACGGCAACGA
CGAACAGGACATAGAAAACACCAACGGACAAAACGGCAACGACGAACAGG
ACATAGAAAACACCAACGGACAAAACGGCAACGACGAACAGGACATAGAA
AACACCAACGGACAAAACGGCAACGACGAACAGGACATAGAAAACACCAA
CGGACAAAACGGCAACGACGAACAGGACATTGAAAACACCAACGTACAAA
ACGGCAACGACGAACTGGACATAGAAAACACCAACGGACAAAACGGCAAC
GACGAACAGGACATAGAAAACACCAACGGACAAAGCGGCAACGACGAACA
GAACATTGAAAACACCAACGGACAAAACGGCAACGACGAACAGGACATAG
AAAACACCAACGGACAAAGCGGCAACGACGAACAGGACATAGAAAACACC
AACGGACAAAGCGGCATCGGCGAACAGAACATAGAAAacaccaaaagaaa
aaaaaagaagtaccCTAAGagagagaagaaaaaacataaGTATGTGACCG
GGTTGGAGAAAGTTGAGGTAGAGGTGGAGCTGGAGGCTTCCATTTGTGAT
CGGAAGTCTCTTGTTGGTAAGTGCGTAGGTCTCCACACCGAAAACCCAAA
TGAATATTGGGTTTTCGGTGTGGAGAAAGTATCTACAAGGGGTGTTTGTG
GTAGTTTTTATGATTGCTTCGATAAAGAAAATAGGCTTTATCAACATCAT
AGTGACAACAACGACAGCTTCTATGCGAATATCATTAGAAGGGGAGAAGA
GCataatgacttcttttttttttatcttgagAAGTCTGAGGAGGGTTACC
AAGTGCCTTATACTGACCATCTTGTCTTGATGGCCAGACTCGAGGAGTTT
GCTCAGTCCTCTCTTTGAGAACGAAATAAGaaggtaaacaaaaaattttc
ccattttggaaatcaagtaaaaaagttttattcGAGAAAACAACCTATCG
TTATGTGGTAGAATTGCTTGCACGTCT
Run BLAST on NCBI

transcript from alignment at scaffold_117:426563..431345+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00046784 ID=TCONS_00046784|Name=TCONS_00046784|organism=Clytia hemisphaerica|type=transcript|length=4783bp|location=Sequence derived from alignment at scaffold_117:426563..431345+ (Clytia hemisphaerica)
AAAAAGAGGTATGCCTTTTGCTTATACTACATTATTTAATATTTATTATA ATATTTGTTTTACACCTATTACAAAGTTAGAATGCCTTTACTTTTTTAGA AAGCAAAGGTAAATCTTTTAAtgattcaaatatattttaaggTTACAGAA TCAATAACTTCTGTATTTATCTTTAGAAATGTCAAAATGAAGATTGCTCG CGACTTTTGTCAGTCAACCAAGTGGTTTGTCCTGGCTGCAATTTGAAACA GAAAAAGGAGAAGAAGAAACTTGCAATGGAGTACACAGTACGAAAAAAAG GTCAGATTATAGTAGATGTTGACGTGCATCCAAACTAGTACTTATTAAGG AGTAAAAATTCAAGTTTTTGAGAGATCGTGATGTTTTCATAACCATTTTG GGCCAATTTGTAATTTAAATCACAATCACGTGACTTCTAAACATGACCTG TAGATTGACTGTGATAAGAAGATAACTAAAAACCGTCCTAATTTGCAACA CTTTATTTCCTTTTCTTTCCATTTtatattcttttcaattttagttACAA AAACCACAATAagtttattctattttttttgattgattgtAATGCCTACT GTTATTAATACTTTCTGCCATAGTAAAGTCAATATTATTTCATAAGTTGT ATTTAATTCCTTCACAACGGAGTCAGGACTGAACTTGAAACGCAAAGCAT AGAGCTGAATGACGAATTGGTTTAATAGcggactgactgactgactgatt gactgactgactgactgactgactgactgactgactgactgactgactga ctgactgactgactgactgactgactgactgactgactgactgactgact ggaGTAACCCCTGGAGtttcttattttattattttcatcgtGAATTGTGG TATTTATTGTTGAAAGTTAGgtctgatttcaaaatttttatatgtTGTTT AACATACAGATTTCTTTCCGCCCGCCTTTTAGCCACTAGATGATTTTTTA TTACCAAATTGAACCATAATATAACATAATTTATCGTTTAAAGTTTATTA GAATTGATTAGTTGATACAGGTTGATAAATTATTGGTTGCTTATATTTCT AGAAATGTCAAAATGAAGATTGTAGTGGACTTCTCTTTTGCAACCAGATG ACGTGTCCTGAATGTGGAGTGAAGCAGAAAAAGGTGGGCAAAACAGCCAT AGATTATAAACCTCTGGGGAAGACATGTCTTACGACGGAGAAGTACAGAA TTCATGGCAGGGTAAGAAGAGACTTccgttttaatgaaattttaatgaaa tcgGGCAACTTTCGTTTTAGCCTGTCCCACATTGAACCATGTAGATATTC AATAAAACCCTAAAGGCTGTACTCAACCTCGGTCCAGCCAAATCTTCGAC GgcttttttttggattttagtcCCCAATGAATGGATAAACTTAAAAGATT CGTTTGACGTCAAATTGCAAAGACTGCAGGCACAGATTTACTTAGATACA GTATTTTATTTGGTAGGATTTTCTACCAAGGAACAATAGAAGTTCACGTA ATTAACCCAATGAGAAGCGTCGCGATATTcacctttttttgcttggaaaa gcttaacCCTATTAGGGGGTGTTTTACACCACGCACGTGCTTTTTCCCTA ATAACTCctggaaaactttttgaaacacccTGAAATTTTCTGACAATTGA ctaatataccgggtgcgccacaaaaaagtttctctctttgaaactaattt tctcgaaatctaaaaattttaaaagaaccattatttttccattggaaaga agaaagataaagttaagttttgatgggtcatttattgaattcgattcatt agatcaaaagttatgctcaattgaataaaaaagtctttttcagaaagtgc tcgaaaacgttaaaaatcgaccccCCACTGCATCAGATTTCATGACTTTT ATTTATAACATCGGTCATAAACTCCaactaaaatcctttaaaacttaaaa atcttaaaatgctCATAACTACTTGAATACTTatcaaaattaattaaatt ttcacaaattttcacaaattttaggTATCAAAAgaggaaattgaaaaaaa caaaaaaaattcaaaaatatttagacgtcattttctatgacgtcataaat tttaatcatttttactCTTATTAAGCATTAATTTTAAGGATTAAAATCTT ATGGTATATTAACAACcagcaaatatgttaaagagtATCCTTTTGGCTTT CAGTTTCAATTGATCTTTTTGTAAGTGTCATTTTTTCCCTAAATCGCCAA CAGGTGCCAAATTGGTGATGAAATCTAAGGTTGTCCTTGACAATTTAATA AAGACTAAAGAGTGGAATCGGTATTTATTTTCTTAGCTTATGGGTTTAGA AGAACAACACCACCATCATGGATTTGTTGTTGATCTGTCANTTTATTTTC TTAGCTTATGGGCTTAGAAGAACAACACCACCATCATGGATTTGTTGTTT ATCTGTCCAAAAATGGAAACGGACATTCAATCGACCACAACGAGGAGGGC GCATTCTTTTCGTGGTTCTTGAAAGAGGACAACGAAGGAAAAAAATTCCT TCCTTACCTAAAGGATCGTTTCGTTGAGTGTGAgttatttttattattct taTTATTATATAGATGTACAGTTTCAGGCACACTTTTGGCTTCTCGAACC GATTCTAATCTTACACAACTTTGTTGTCAGCATGTTCTCGGCTCTTCGAC GTTTATTGATGGTGCCATCTAAGATAAGCACCATTGAAATTACCAATAAT ACCGGGAACGAGGGAAACTCCACAATATGTTCAGGGCTCCTGGTATAAGT GAATTTTTATAATTCGATATGCACATAATTTGCTCCAAACCCGCTAAATT AAGTCTCGACCAACTCtaaatattttcatgaattGTCCGATTTTTATAAT CTAGGCTCGAAAGTACACCTTTTTTAATATATTCACCCTAATTACCTAGT TTCAACCTAAACATCTTTTATTCGCGAAAATGTTACTTCTCATCCAAATT AAATCCTGCCTGTTGGTAAGGGGCTAAATCTTAGGATCCTTGACATCTTT TTTGCGATACAACCAAACCTGGTTCAATTCAAAGAAtaataatttgatga aaattcgaaGTTGATTGGCTCTCTACTGTACTAATTTAATgtgattaatt ttcgcgtggattaaatttcgcggattatagcctcatccgcgaaatttaat cctagTGAAGCTTTGAAAAGAGGCCTTCCGTGAAAATTTATCcatgcaaa aatttaaaaaaatcttcagatcCGCTATTAAGTTATTCTATAAGTGAAAT TTAAACCTTCACTCCCCTGACTAGCTAAACAATTGAGACTTTTCAATGAT TGAATTGCTTTTTAGgacaaaaactatttttagaACTTAGTTCGTTACTG TTCAAAAATAATTAAGTCAAAGGAAACACAAAAATAAGCCCccgcaaaaa aattgaaaactcgTCAACCGCGAAACTTAacccccgcgaaaatttatccc attaaagtatgcaCGGTATTATACGATATATTTTACTTGAATTTTCAGGG TCCAAATCTCGACAAGCGAACGAACAAAGCCGCAGCGACGAACAGAACAC AGAAAACACCAACGGACAAAGCCGCAACGACGAACAGGACATAGAAAACA CCAACGGACAAAACGGCAACGACGAACAGGACATAGAAAACACCAACAGA CAAAACGGCAACGACGAACTGGACATAGAAAACACCAACGGACAAAACGG CAACGACGAACAGGACATAGAAAACACCAACGGACAAAACGGCAACGACG AACAGGACATAGAAAACACCAACGGACAAAACGGCAACGACGAACAGGAC ATAGAAAACACCAACGGACAAAACGGCAACGACGAACAGGACATAGAAAA CACCAACGGACAAAACGGCAACGACGAACAGGACATTGAAAACACCAACG TACAAAACGGCAACGACGAACTGGACATAGAAAACACCAACGGACAAAAC GGCAACGACGAACAGGACATAGAAAACACCAACGGACAAAGCGGCAACGA CGAACAGAACATTGAAAACACCAACGGACAAAACGGCAACGACGAACAGG ACATAGAAAACACCAACGGACAAAGCGGCAACGACGAACAGGACATAGAA AACACCAACGGACAAAGCGGCATCGGCGAACAGAACATAGAAAacaccaa aagaaaaaaaaagaagtaccCTAAGagagagaagaaaaaacataaGTATG TGACCGGGTTGGAGAAAGTTGAGGTAGAGGTGGAGCTGGAGGCTTCCATT TGTGATCGGAAGTCTCTTGTTGGTAAGTGCGTAGGTCTCCACACCGAAAA CCCAAATGAATATTGGGTTTTCGGTGTGGAGAAAGTATCTACAAGGGGTG TTTGTGGTAGTTTTTATGATTGCTTCGATAAAGAAAATAGGCTTTATCAA CATCATAGTGACAACAACGACAGCTTCTATGCGAATATCATTAGAAGGGG AGAAGAGCataatgacttcttttttttttatcttgagAAGTCTGAGGAGG GTTACCAAGTGCCTTATACTGACCATCTTGTCTTGATGGCCAGACTCGAG GAGTTTGCTCAGTCCTCTCTTTGAGAACGAAATAAGaaggtaaacaaaaa attttcccattttggaaatcaagtaaaaaagttttattcGAGAAAACAAC CTATCGTTATGTGGTAGAATTGCTTGCACGTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_029853XLOC_029853Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00046784-exon-scaffold_117-1491911889:426563..426570TCONS_00046784-exon-scaffold_117-1491911889:426563..426570Clytia hemisphaericaexon
TCONS_00046784-exon-scaffold_117-1510915933:426563..426570TCONS_00046784-exon-scaffold_117-1510915933:426563..426570Clytia hemisphaericaexon
TCONS_00046784-exon-scaffold_117-1575043694:426563..426570TCONS_00046784-exon-scaffold_117-1575043694:426563..426570Clytia hemisphaericaexon
TCONS_00046784-exon-scaffold_117-1491911889:427665..427823TCONS_00046784-exon-scaffold_117-1491911889:427665..427823Clytia hemisphaericaexon
TCONS_00046784-exon-scaffold_117-1510915933:427665..427823TCONS_00046784-exon-scaffold_117-1510915933:427665..427823Clytia hemisphaericaexon
TCONS_00046784-exon-scaffold_117-1575043694:427665..427823TCONS_00046784-exon-scaffold_117-1575043694:427665..427823Clytia hemisphaericaexon
TCONS_00046784-exon-scaffold_117-1491911889:429017..429191TCONS_00046784-exon-scaffold_117-1491911889:429017..429191Clytia hemisphaericaexon
TCONS_00046784-exon-scaffold_117-1510915933:429017..429191TCONS_00046784-exon-scaffold_117-1510915933:429017..429191Clytia hemisphaericaexon
TCONS_00046784-exon-scaffold_117-1575043694:429017..429191TCONS_00046784-exon-scaffold_117-1575043694:429017..429191Clytia hemisphaericaexon
TCONS_00046784-exon-scaffold_117-1491911889:430161..431345TCONS_00046784-exon-scaffold_117-1491911889:430161..431345Clytia hemisphaericaexon
TCONS_00046784-exon-scaffold_117-1510915933:430161..431345TCONS_00046784-exon-scaffold_117-1510915933:430161..431345Clytia hemisphaericaexon
TCONS_00046784-exon-scaffold_117-1575043694:430161..431345TCONS_00046784-exon-scaffold_117-1575043694:430161..431345Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_117supercontigscaffold_117:426563..431345 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0538357 0.0524983 0.0304778 0.119271 3.77523 3.12666 1.53902 4.53583 1.04008e-06 0.689705 1.85446 0.470322 1.39637 0.00218072 0.0458546 0.0656119 0.323314 0 0.0572286 0.0598856 0.104103 0.11425 0.0308635 0.0561188 6.78311 2.40873 0.0738195 0.0787821 0.0597535 0.0304397
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00046784 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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