TCONS_00046679 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00046679
Unique Name	TCONS_00046679
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2372

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_116:819894..826299+

transcript sequence

>TCONS_00046679 ID=TCONS_00046679|Name=TCONS_00046679|organism=Clytia hemisphaerica|type=transcript|length=2372bp
CGCCACTGTCGGTGGTACTAGCTTTGTACGGTAGGTTATGTTGGGAAGTT
TCTTGTCAATGACGTATTAAAATAAGAAACACTGTGTCATGATTTCACTT
TTTAtgatttgattttcatttacAGATGACTAAAGgtagaaaaaatcgaa
aaaaatagaAAGCCAAAAATACTCTTAACCTTATTTTAAGAGCAATAGGT
TAAGAGAAAGAACGGGCGGAGAAGTAGATTAGAAACCTCCACTCAGCTCT
TCAAATAAATGAGATACAGCAAGGGTTCAGTTGGGACGTCAGTTACTAAC
GCCTATAGGAGGGGCGTATCTCTTGACGAGAAAAATATGCCGCCCATCAC
GCCCAGTACTGTAGAACGCCTGTTAACAACGGACTTGCAAGACTTAGAAA
TTCGTTCCTACCGttataataacaacaacaataataatgGGCGTGTCAAA
CTACGCCATTCTCAATCTTTGACGCTAGAGCGGCACCGATATGTCAGCCG
TAAACGGTTGTTACGTCGTATGTCGCAATCGTTTATGCCAAGCTGTGTGC
TCGTACCGAATCGGAATCCAATAGAAGATCTTTATAAATTGTTTCCTCAA
CTTCCACCCGGCGAGAAACCCTTAAATGATTTTTCGTGCGCTTTATACAA
AGATATTCTACTGCAAGGGAAAATGATCATATGTTCATCGTGTATATGTT
TTCATTCCAACATCTTTGGTTATGAGACGAGGGTTATCATCCATTTCAAG
AACGTGGTGGCCATCAAACGTGAACGAACTGCTTTTGTTGTACCCAATGC
TATTTCCGTACGGACTGTCAAAAAACGatATCTCTTCTGTTCTTTCTTAT
CACGCGAAACTTCCTTCAAATTGTTGTCGAGAATCTGGAAGCAAGCAGTA
CATATGGAGCCTGATGAAAATGACAACAGCCCTACAGATCCAATCAAGAT
AAGACCTGgtgGTGCGAAAGAGGCATCTGACGATCTTCTGAATTttagtt
cttcttcttcttttggcTCATCTTTCCCACGCCCAACCGCCCTTCCTGAC
CGCCCGCATTCATCACCGCCCTCTTTAGGTGGATTGGGTGTTTCCAATAA
TGATGGCATGTTCTGTTCTCCTCGATCCGATCTAGAAGATTGTGTTTTCA
CTGTTGCTGACATGGGTGGTGATTCCGATTGCTCAACAGAATCTTGTGAC
TCGATTCTAGATCGTATCAACGAGAATACCTTAAACAATACAACGAACTG
CAGCCATATAAGGCGTGTTAAATCAACTAGTAATTTATCTGAGGTAGCCG
CACTTGGtcataaattttgttttaaaaatttggagCGAATTCGAAATGAT
TATAACAGTAAGCGTCATCGTTACCATGAGCAACATAATGGACCCATAAT
GGCgtcaaaaacgaaaaacaacgaaacttgtaaaaatcCTAAAGAAATCC
TTTGCACGATATCAAGCAAGTTTAAAGAATATGGGAACATCTTATCAACT
AGACTGTGGCATCTAACTTCTTTTGTAAATAGCCTGCGCACACATCATCC
GTTTCTACTTCTTATTTCTATATTAGTTCTTTTGTTATCCATTTTTACAT
TCAATTTGTTGCTTCGAATCAACTTCATATCGGATTCGATCcaagtcaaa
aatgaaaatcaaaaagtAACGGACAATTTACGACTGAAGAATTTGTTCGA
ATTCAAAGAAGGAATCCATTCTGCAAACGTGGAAAGAATGAGATCGATAT
TATCTGTCAACCTGGAGACAGTTAGTGAGGTTCAAAAGACGTTACGAGAG
TTACGCGATAAACTTAAATCCAACGATGATTGAGTTCGTAATAACACACT
AGATTATTACATGGATTTGGAACTGGttgctttttttacatttttttgtt
ctttttttctctattttgctCATATTGTTTTGGGAAAGAAGTTTTAGCGG
TTCGTGACAATTCttgatgttcatgacgtaattttttatacggaaacaca
cgAAAAACACCGGGAGTTTGCCACCAGTTTCattatttaaattcaaaact
agTGGCAAACGGCTGGTGTTTTTCGTGTGTTTCcatataaaagattacgt
caatATCAAGAGTTGAACGACCGTCTTTGAGGTTGATTATAATGCTGAAG
TTTTAAAAAATATCCTTTATTTGAGCTTTGAAAGACACCGTAAAATCTCT
TTCCCTAATCGTAAATCTGAATGGTCTTTCAAACCTTCAATGGAATTGAT
AGAATACAGGTTGGCTGGTCCAATCTGGTTGGTACattaaaaattagttt
ttccaAGAACTGTCAGTTCTCCGGATAGCTGGTCTATTTGAGTCTTAATT
GAATATTAAAGTCAAATCTGTC

Run BLAST on NCBI

transcript from alignment at scaffold_116:819894..826299+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00046679 ID=TCONS_00046679|Name=TCONS_00046679|organism=Clytia hemisphaerica|type=transcript|length=6406bp|location=Sequence derived from alignment at scaffold_116:819894..826299+ (Clytia hemisphaerica)
CGCCACTGTCGGTGGTACTAGCTTTGTACGGTAGGTTATGTTGGGAAGTT
TCTTGTCAATGACGTATTAAAATAAGAAACACTGTGTCATGATTTCACTT
TTTAtgatttgattttcatttacAGATGACTAAAGgtagaaaaaatcgaa
aaaaatagaAAGCCAAAAATACTCTTAACCTTATTTTAAGAGCAATAGGT
TAAGAGAAAGAACGGGCGGAGAAGTAGATTAGAAACCTCCACTCAGCTCT
TCAAATAAATGAGATACAGCAAGGGTTCAGTTGGGACGTCAGTTACTAAC
GCCTATAGGAGGGGCGTATCTCTTGACGAGAAAAATATGCCGCCCATCAC
GCCCAGTACTGTAGAACGCCTGTTAACAACGGACTTGCAAGACTTAGAAA
TTCGTTCCTACCGttataataacaacaacaataataatgGGCGTGTCAAA
CTACGCCATTCTCAATCTTTGACGCTAGAGCGGCACCGATATGTCAGCCG
TAAACGGTTGTTACGTCGTATGTCGCAATCGTTTATGCCAAGCTGTGTAA
GTTGTATTTgggtattcatgatatttattACGCAATGGTTTCATTGTTGA
ATCTAAGCTagagaaaaattgtttaaaatttgccaCTCCTGGAAAAACCG
AAATATTCCCGAAGGAAccattacgtaatgaatatcatgaatactaaTTT
GGGCTTGATTGATAGGTTTCTGATCAATTTGTTTTCATAAACTATTCCAA
GCTCCGTAACTGTAACTGTTTTTTTTATCTCAGGGGAATCTTATTTGCTC
GAATTACAGAGATTCGAATGAAAGAAAGTATTTCAAGAGAGTTTCTACTT
GACGAGACTGGAAAcaagttcaaattatagaacattcgaataactgaagt
tcgaataagcgagaacTTACTGACATAATGTATATTCAATAAAATAACCC
TGCATCATCACCTTCTCTTATCTCTAATTATcccaatttttccgattttt
ttagGTGCTCGTACCGAATCGGAATCCAATAGAAGATCTTTATAAATTGT
TTCCTCAACTTCCACCCGGCGAGAAACCCTTAAATGGTGAGTGTTTCATC
TCAATGTACCTGCAAGTCATGAAGTagtactcctttttttgaatattACT
ACAGTTTTCGGAGTTTGTTGACCTTCAGGGGTAattcacttgaaaaaagg
tgtacgatactttttgactttttgagttttcatttgacttttcatttgac
ttttttttgactttttacaaactttcatttcGACTTTATCCTGACAAAAA
TGTACACCGTCCTCGGCGCCCAAAATTTTCCACCCTTTCCAAAAACGCCC
ATCGTCCATAAGTTTTTCTCCACCCATCCGCCaattcaagaaacttttga
ctttttttttgactttatttttgacttttttttgtggtgtacgataattt
ttcgagcGATTTACCCCTCGGTTGACCTTCTGCCCAATCCCTAAGTTTGT
TCGAGATACCAAAACCCGTATGTGTTTGATGAAAACTTGACGAAAATAAG
ACTTTTCAATTACCATAGTAATAtcttgaaaacgaggtaagccttgctcg
tgacgtaatttttaAGTAAAGGTCTATCGACGGTATTTTAATTCTCATCA
TACGGAAAAGTTTATTAAtatataaaaattctaaaatctctTGTTTCAGA
TTTTTCGTGCGCTTTATACAAAGATATTCTACTGCAAGGGAAAATGATCA
TATGTTCATCGTGTATATGTTTTCATTCCAACATCTTTGGTTATGAGACG
AGGGTAAGAAATCCCTTCATCTGATTGGCTAACGACGATTGTTTGTAGAA
AGGCCGATTGTTAAGAAATCCCTTCATCTGATCGGCTAACGACGATTGTT
TGTAGAAAGGCCATTCCCTTCATTCAAGAATTTCGTTATTGGGGAATATC
ATAAATATAACGTCTAAACAGACCTTGAGTGCTTCTAATTCTActctttc
attttcttcgtTTACAGGTTATCATCCATTTCAAGAACGTGGTGGCCATC
AAACGTGAACGAACTGCTTTTGTTGTACCCAATGCTATTTCCGTACGGAC
TGTCAAAAAACGagtaagtgttttttttttcacggtAAAACACGAGTTGA
ACCAATCTCGTCATTGTGTaccccaggctttatttacgtcaAAGCTGGAT
GCCAAAGAATATCCTACTTTTGACAGCTGATGCGAGTCCCTTTCTCAGGT
CCTATTCAGCATACATAGTCGATAATACACAGGGGGCGTTGTTCTTTATC
AATGGTGAGTTGTGTATCCCTTGTTTTCTACATCCTGACTAACTGGGGAC
GACGTTTATTGAGTGCTTTCATGGTGTTCATTTTgtgggtcaaaactgcg
ggtttgtTTTAAATCGTCTCAATTGCTCTTCCGTCCGCTATAGCACTATT
GGAATTAACATAGGATCAATCAAGAAGCAACCATCTTAACTTAATGCTTA
GATGTATATATTAGACAGGGGCACGCTTTTCGTTTAGAAAGTACCAAAGG
ATAAAGAAGCTACCCCTAACAAGGTACAAAAAAACAGACTCCAACTATTG
GTGTCCGCTAAAACaaaaatcttataaaatttatattgctgttattgttt
tttttcattttatttcagtATCTCTTCTGTTCTTTCTTATCACGCGAAAC
TTCCTTCAAATTGTTGTCGAGAATCTGGAAGCAAGCAGTACATATGGTAA
GGAAAAGACTCTGTATTACTGATAATGAGAACATGGGAGGCGTACGAGAC
TTCGGTAATTGTGGAAATCCATCGTTTAACTTTAGACTTTTGGTAATCTT
GCAAAATCTATAagattcaaaactttggaaaaatgGCTCTAAAACtatag
gaaaaataaaacaCATTTACAAGTATTTCGGAAAACCAGAACCTTCGTAA
GCCCCGCTTCCTCCTACCAATTCCCAACCGAATTTTAAAACTTAGTGGCA
GGGGCTTACTTGTTTTacttaattttaatttttttatttttatattctaG
GAGCCTGATGAAAATGACAACAGCCCTACAGATCCAATCAAGATAAGACC
TGGTAAGttcatttttaaaacacatCCTCGTTTAATTTTAAAAGCTTTGA
GTCCTCCTTACTTTGAGCATTCAATATTACAATACAACTTTTTTaccgta
gctgccaattgccgTATGGGCatttttttaccaccctaaaaccgtcccag
tctttctTTTGTACCTAAaatcaatagaaaaaagtgtaaaaaaggattgg
atcgagtttaaggtggtaaattaaataataaagtggcacacgcctgaccg
tgcgactacggtcgaaaaggtttattattctttcctttaaagaaaGCTTT
AATAAAGAGCCTCTCTATAGattatgctatagtctaagacgaatcactat
ctaagaaaaaagcccaaaggcGAAGAAAATTCATAAGCGgctttttttgc
cgaaaagagtagAGTAGAGTTTGTCAGTCGTCAGTCTTTCTTCGAAAATC
TCCAACCCATTTATTTTCCGTCTGCTTCCATAGCAGCTGTAAATTCTGCG
TGTActatattttcccgcctttactatcactgtaacggacgataccATCG
TCTTAGCATCTCTATTGTGGATTAAGAGTTAATCAAATTTAttatcattc
aaaattttatttttttcaggtgGTGCGAAAGAGGCATCTGACGATCTTCT
GAATTttagttcttcttcttcttttggcTCATCTTTCCCACGCCCAACCG
CCCTTCCTGACCGCCCGCATTCATCACCGCCCTCTTTAGGTGGATTGGGT
GTTTCCAATAATGATGGCATGTTCTGTTCTCCTCGATCCGATCTAGAAGA
TTGTGTTTTCACTGTTGCTGACATGGGTGGTGATTCCGATTGCTCAACAG
AATCTTGTGACTCGATTCTAGATCGTATCAACGAGAATACCTTAAACAAT
ACAACGAACTGCAGCCATATAAGGCGTGTTAAATCAACTAGTAATTTATC
TGAGGTAGCCGCACTTGGtcataaattttgttttaaaaatttggagCGAA
TTCGAAATGATTATAACAGTAAGCGTCATCGTTACCATGAGCAACATAAT
GGACCCATAATGGCgtcaaaaacgaaaaacaacgaaacttgtaaaaatcg
taagtaaaatatttttcaagttgatcAAATTTTGTCTAGATTTTAAATAT
CTGGTGCAATTAGAATTTTATGAATGGTATCCTAATTaatatatttaaaa
gtttttaaaataggTCGAAATTCGATATCAAACAATTATACGTggattta
aaatatattttcgaaaatattttcgaaattgtATGTCTTATTTGTTGCGT
AAACTTCAATCAAAATAATTCCCTTGTTTCAGCTAAAGAAATCCTTTGCA
CGATATCAAGCAAGTTTAAAGAATATGGGAACATCTTATCAACTAGACTG
TGGCATCTAACTTCTTTTGTAAATAGCCTGCGCACACATCATCCGTTTCT
ACTTCTTATTTCTATATTGTAAGTTCTTTACCGGCTTTTTATGattaatc
tttgttttctttgtcCACGATTACGTCCAAgattattagcgagtttatgt
atgggTGTCCTTCTGAGACGGAGACGGTTAGTTTCTAATTTGTCTAAATC
CTGACTGACTAAGGACGACGgcaaatcagcacttttactaGCCAATTATA
GGATTAGACCAATCAgattcctttcaattttttatatataaaggATTAGA
TTTCTTGATATCATTCTGTCTGaattcacgtttttttttaagcaaactat
ataaaacttaggcttcgatgaccagaatattaagaaaaagttaagaacat
ttaaggattttctagactctaaaacacccaatgtcttaggaaattgcaaa
gatactcaaaaaatggtaaaattaagaatatcttaagaacatttttaagt
ttaaaactcagaaagttaagagtatctaaaggcttcaaaaattttagatg
ttgtAGTGTAGTTTTTTCATatattctttctttctttttacagAGTTCTT
TTGTTATCCATTTTTACATTCAATTTGTTGCTTCGAATCAACTTCATATC
GGATTCGATCcaagtcaaaaatgaaaatcaaaaagtgtAAGTTCAGTATT
TTTAATGTGTCAAAATGATCACAGAACCCTTCTAAACAAGATTTATCTCT
CATCTAACAAGGTTCTCTCATTGGTTTAGTCATAGTccaaagcagccggc
gaggcgatcTTTTCAAGGGTATGATAGCATGCTCTTGTTGGCTAGTAACC
CTTGAAAGCTTCAAAACACATTTTTCGTAGGGGAAAAGATCTATACAAAA
AGTCAATCCATCTTTCCGAAATATAACGAAAACTTTTTCGAAACGAAGAG
GGATGTTGTCGTCTGCTTCCTCTTTATTaaagatttgaagaaaaaaaatt
acccaaaGACACTGTAATAATTCTCCTTCTTACTTCTACAATGTTATAAA
GAGGtctattttcattttgcttttagAACGGACAATTTACGACTGAAGAA
TTTGTTCGAATTCAAAGAAGGAATCCATTCTGCAAACGTGGAAAGAATGA
GATCGATATTATCTGTCAACCTGGAGACAGTTAGTGAGGTGAGTTCAACT
TTGAATTTTAAAGTCTAAGTCTtttaaagggaagaaattttggcgagaag
aaAAGTTATCAAACCTTGCAGTCTCCTGgtataaaaatgatttttctttt
tgttcaccCTCAGGTTCAAAAGACGTTACGAGAGTTACGCGATAAACTTA
AATCCAACGATGATTGAGTTCGTAATAACACACTAGATTATTACATGGAT
TTGGAACTGGttgctttttttacatttttttgttctttttttctctattt
tgctCATATTGTTTTGGGAAAGAAGTTTTAGCGGTTCGTGACAATTCttg
atgttcatgacgtaattttttatacggaaacacacgAAAAACACCGGGAG
TTTGCCACCAGTTTCattatttaaattcaaaactagTGGCAAACGGCTGG
TGTTTTTCGTGTGTTTCcatataaaagattacgtcaatATCAAGAGTTGA
ACGACCGTCTTTGAGGTTGATTATAATGCTGAAGTTTTAAAAAATATCCT
TTATTTGAGCTTTGAAAGACACCGTAAAATCTCTTTCCCTAATCGTAAAT
CTGAATGGTCTTTCAAACCTTCAATGGAATTGATAGAATACAGGTTGGCT
GGTCCAATCTGGTTGGTACattaaaaattagtttttccaAGAACTGTCAG
TTCTCCGGATAGCTGGTCTATTTGAGTCTTAATTGAATATTAAAGTCAAA
TCTGTC

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_029789	XLOC_029789	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_116	supercontig	scaffold_116:819894..826299 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.31749	0.330293	0.43452	0.0776666	1.21863	0.975081	5.71779	6.9532	3.15104	4.05161	6.39517	5.93425	4.95334	5.64469	3.67906	5.83785	9.0199	13.9701	12.5244	9.57089	9.70197	9.55267	5.48811	6.60762	11.1155	17.525	5.76862	4.14286	0.906657	1.08517

Blast

[Close]

BLAST of TCONS_00046679 vs. Swiss-Prot (Human)
Match: GRM1B (GRAM domain-containing protein 1B OS=Homo sapiens GN=GRAMD1B PE=1 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 8.736e-25
Identity = 47/113 (41.59%), Postives = 80/113 (70.80%), Query Frame = 1

Query:  574 EDLYKLFPQLPPGEKPLNDFSCALYKDILLQGKMIICSSCICFHSNIFGYETRVIIHFKNVVAIKRERTAFVVPNAISVRTVKKRYLFCSFLSRETSFKLLSRIWKQAVHMEP 912
            ED  KLF QLP  E+ + D+SCAL +DILLQG++ +  + ICF+SNIF +ET + +  K++ ++ +E+TA ++PNAI V T  +++ F SF +R+ ++ ++ R+W+ A+  +P
Sbjct:   96 EDFRKLFKQLPDTERLIVDYSCALQRDILLQGRLYLSENWICFYSNIFRWETLLTVRLKDICSMTKEKTARLIPNAIQVCTDSEKHFFTSFGARDRTYMMMFRLWQNALLEKP 208

The following BLAST results are available for this feature:

BLAST of TCONS_00046679 vs. Swiss-Prot (Human)

BLAST of TCONS_00046679 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
GRM1B	8.736e-25	41.59	GRAM domain-containing protein 1B OS=Homo sapiens ...	[more]

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TCONS_00046679 (transcript) - C. hemisphaerica