|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00045878 ID=TCONS_00045878|Name=TCONS_00045878|organism=Clytia hemisphaerica|type=transcript|length=4192bp
AAATGGGTGAAGATGTTGGCTTGGTCAAAGCTCCCAGAATTTGTGAAATG
ATCCGAGAGGAGTCGGGTTATGGATTCAATCTTCACGGAGAAAAAGGAGT
TATTGGTCAATACATAAGTGCAATCGACCCAGGAAGCGCAGCTGAGAAGT
CTGGATTATGTGTTGGTGATCGCGTTGTCGAAGTCAATGAAGTCAATGTT
GAAGCAATGTCTCATGGAGAAGTGGTCCAACAAATCCGCACTGATCCTAA
AAAAGCTATTCTTTTGGTAGTGGATAAAATCACTGATAACTATTTGAAAA
AGATTAACAGACCTGTTACATCTGCCCTTGCCACTTATACTACTGTTCAT
GAAATTACAATAGAAGAAGCTGAGAAATTACAGGAGTTGAGACTCCAAGC
tgaacaacaacaaaatgtTACTGATGATGCTGATGATGATGGTAATACGC
AATTGAGtgttgaagatgaaaatgttgaATTACAAGATTCAGATTCGTTA
CCATCAAATGGTGAAGAGCCAGAAAATGAGGCCCCTGGAGACACACCTGA
GTCAGAGAAAATTTCATCTGTCCCAGGAGACATTGAATCTCCACCTCTAA
ATTCACATACATCAATCTCACCAGAACCAGAAGAGCCTACTAATCAAGAT
CCACCACCTGAAGAATCCCAACCTGAAGAATCCCAACCTGATGAAAACAT
ATCACAACCTGATGAAAACATATCACAACCAGATGAAAATATATCACAAC
TAGATGAAAATATATCACAACCAGAAGATCCAGATTATGCAATTCTAGAA
TCACCTCCACCAGAAAAGAGATCTGTGATAGAGTCTCCGGCAGAAAAGGG
ATCTGTGATAGAAGCACCGCAAGATGAATCAACAATGCCAGATTCTCCTC
AACCAGAACAAGAATCTGCAGAGCCTGTTGTNCAACAATGCTAGATTCTC
CTCAACCAGAACGAGAATCTGCAGAGCCTGTTGTTCCGATTGAGCAACAA
TTTAGTGTTCTTGAAGGAAAGAGCAAAAAGCAACCACCAATCGATACAAA
AGTTGTTGAAAAGGATTCTAATAAAGAATCTAAGAAGGACTCTTTTAAAA
AGATGTTTATGAAAACACCGAAACGTAAAGAAGTCAAACAGAATTCTGAT
TGGAGATCAAAATTGGATGAATTTAATAATTTGTAGAAATGTTGGTATGT
GTGGCTTTCCAAATAATTTAGATCTAGAGAAAAGTCTTGATTATTAGATG
ATGTAAGATTCAAAAGGCAAGATTACTACAAAAttggaatatcttttttt
gagaTATCACTGTATTTGCTAACAGTTAGATTCATGGAATATAATATCAA
AGAactaatttatctttttaatactattttttagacttttaaTTAACACT
AGGTTTGAAGGTGTAGACCCTTACATTATAATGTGGGGTCAATTATTTGG
AAAGAGAAGGAATTGTAGCAATTGAATAAAATGCTGTCAAAATGGTCAAT
GTGCTATGTAGTAgttaaaatttgtgatttttgtttGACATTTCTTGACT
TTCAAAGTCTGTAAAAACTGTTTTTTCTGTCAACACGTAAATTATTAGCA
ATCTTAAAATCTTAGCATTAACTCTTTTCTTTAGAACAAATTTAGAAATT
AGAATTtaaatacttgtttttttatttataagcatacaaaaatttgaaaa
caggctCCGAAATGCTCAGGTCGAAAGCTtaaaaaggctgaaaaatgctt
gaggggatgcttaaatctaaaccttaaatttaaggaaatactgaaaatcc
gtaaaattcgagccaaaaaaagctaaaatcaggaaaaaaacatttttcgt
aggctcaagtaatgcttgccatatgcttaattttttcccatatctgagcc
tagatatgcttataagtgcaatgcttataaaaaaaaaacatgtactcaaA
ATAAGCCTAAACCAAACGGACTGACACAAAATGTCAAAACAGCATAATAT
CTAACGTCCATTAAAACGTTaaatgaatgttgaaacaacgttatgttcTG
AAGTCAATTCGCTttagtgtgcactctttttcgCGACCATACAAAAACCA
TGTTAGCGTAAAGGCTGATTCCTTTCAAGCGGTTTCCATAATGGTAGAAA
AAAAGATTGCACGCATTAAATAGCGAATGGTGGACTTCAGGTTAGAATGA
AGTGGTCGTTAAAGCAATACTTGGCCTGAGATTTGCCTTTAGTCATATTA
ATTTTACGTTTTAATTTCGTAGTTTTACATAGTTTTCATTTTAAAGGTTT
AAAATCTAGGGATAGATCTAATCTTCAAAATTTACTAGAAATCTTTTCAT
TCTAACATGTTTGCCAAATTACTGATAATTAGTATGTACGAATAGATGTC
AGCTTGTTGTTAACAGATCTATCAAATCTCTTATCAGCACATGTTTTTAA
ATGTGTTTATTAGCATTATGTCATACTTGTCATCAGTAATATTTTTCACA
GGGAAGTTTCTACTATCTCATTAATTATCgatcaaagagattttttttca
aggtaCATGAAAAAGATGGTAAAATACTTCTGTTTGACAAGAATAAGCGA
GAAGAATAGTTTTTAAGAACACGAACGAGGCTCAAAAGCGCcaagaaata
agaacaatttgaggacAATCCTGAGCCTTGAATGATTGATTCTTAAGAAA
ATCTAAACTTAGTAGAATGAGTTAAGACTACCTCAAATCACCCTTAATAT
AAGAGAATGCTGAGTAAAATtcgaggctcaaagtgccaattTTTGAAGAC
CTTAGCACGTGAAGCTATATATATGCTTTAGATATAGATAAAGCCATTTT
ATGTTTTATCCaagataatatttttaaaaccaATACTATATTGTTTAGCC
AATGTATGATAATTTTAAAAATGGCaactaatttttaattttccattATT
CTGCTATTTAGACTCGGTAAAAATTTTAATGCGGGGGTaacttttcttta
attttcaatttttatgttttaaaggTAATTCATTTATATTATAGGAAAAT
ATTATTCCACGAAATTTTATATCATATAGATCAACAGTTATATTATAATA
CATCTTTCAATTATTCGACTTTTAAAAATCTATTGAATCTTTTCTTACGA
AGTAACATGTAGCACTTAACTCCAGTCCCTTAATTGAGTTCATAATTTTA
TCAGAGCTTTAAGAATTTTGctacaatcggcgccgaaatatttggcaaaa
aaggggaattctcttaaaactttaaaaccgcaagtgatttttaagtgctt
tgaagtacagttcggaagtagagttttaattCTGAGTATTGAAATTAGAC
TTAAGAGTTTGGACCTTAGGATTTCAGgttctaaaagctcaaaaatgttc
caataaggcagAGAATATAGTCTGGAAGCCACtcctaaattgaaaaattc
cGATGAAGCAAAGTGGAAATACTGAACCTGCAATTCTCGCTTtgaccttt
aaattctgaaaaacgttaaaataccaaaaatggtcaatatTTTTCGGTGC
TGATTGTAGCTACAAGCCCAATCTAACAAAAGGTATCTATCAAAccttta
aacttttttactgGGGCCATTCCCTTTCATGcaagaaaaatttccagaaa
aaaattcagGGGGTAATTACATGTGGCTTGAAAAGGTTAGTCCATCCCTC
TTATGAATACTAAATGGAGTAGGACCCCTCACGAGActagtctgtacaca
aacccgatatctacggctaatttcaaaattcattgcactaggctacgata
atcgtgagatacactctggtacagattATCACGAGACCATCTCTTCTAAT
TTTTGGTTTCGTCACGATTGCGAAAATTTCCTGATCCCGCATCATGCAAG
AAAGAAGCCTCATCAGTCACGCTAATCGCCCTGGGATGGGAGCGATTGTA
TACATCTTAATTACCTATTACTTCATTCTTGAATGATAAGagattttgta
aataaaatttttcttttgattatttcactacaaaaatcaaaatatataca
ttttaaTACTTTATAATATCTTCATAAAagtggaaaaaaataataacatc
ttTGTCATAAGTTATATATTGTACATGATTGTTTCGAAAATGTCTATTTG
GGATACCAATTTGGGACACCTTTTTGATTTCAGAGTCACCCA Run BLAST on NCBI protein sequence of TCONS_00045878-protein >TCONS_00045878-protein ID=TCONS_00045878-protein|Name=TCONS_00045878-protein|organism=Clytia hemisphaerica|type=polypeptide|length=313bp
MGEDVGLVKAPRICEMIREESGYGFNLHGEKGVIGQYISAIDPGSAAEKS
GLCVGDRVVEVNEVNVEAMSHGEVVQQIRTDPKKAILLVVDKITDNYLKK
INRPVTSALATYTTVHEITIEEAEKLQELRLQAEQQQNVTDDADDDGNTQ
LSVEDENVELQDSDSLPSNGEEPENEAPGDTPESEKISSVPGDIESPPLN
SHTSISPEPEEPTNQDPPPEESQPEESQPDENISQPDENISQPDENISQL
DENISQPEDPDYAILESPPPEKRSVIESPAEKGSVIEAPQDESTMPDSPQ
PEQESAEPVXQQC Run BLAST on NCBI transcript from alignment at scaffold_102:232213..241025- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00045878 ID=TCONS_00045878|Name=TCONS_00045878|organism=Clytia hemisphaerica|type=transcript|length=8813bp|location=Sequence derived from alignment at scaffold_102:232213..241025- (Clytia hemisphaerica)
AAATGGGTGAAGATGTTGGCTTGGTCAAAGCTCCCAGAATTTGTGAAATG
ATCCGAGAGGAGTCGGGTTATGGATTCAATCTTCACGGAGAAAAAGGAGT
TATTGGTCAATACATAAGTGCAATCGACCCAGGTATATAACATTTTTGGA
CTGACAAGGATATGTAGGGGGTGACAGATCTTGTTTCTGAACCTTTAGGA
TGACTGAACTTTTTGATATTTTAATACTTCCAAATAAATTTATATGGTTA
TATGGGCTACCAGAATTCAACATAATTGCAAACTTAGTCTCAAGTTTCAT
TAATTTATTGGCTTTTTCTCAAAAAACGTGTTTTTTTCATGTTGTTTTTT
TTGACGTTACAGGTCTGTAATTTTCTGTAAGGAGCTTGCAATATGAAAGA
TTATTGTTTTCTGTTTAGCCCTTTTACTAATGTATCTGGAAATGCATATT
AACACTTAGTTTCCCATAAGGAGTATAACTGACACTGCATTTTATGAANN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
GCCCAGAAGCTTAAAATATTCTTATTACCATAAGGAACAAGAAAAACCCC
AAGAAAGTTAGTCCACCAAATGGATAAGATACTTCCCGGCTCGTACCTGT
ATATTTTAATACTTCCAAATAAATTTACCAAAGCCAAAGCAAAGGCAAGG
GAGAGGGTTATCATATCCGAGAAAGTGCAAAAATTAGGCACATGCAATAT
TTCAAATAGACGATTTTAAATACTATGTCTATTTCCAACATTTGTGTGTT
CATTAAGTCTGCTAAATGACCTGCCCTACGTCAGCTTGGTAAAATCCGTG
TGTTTTCATATGTAAACAAAAGTACTTACACATAGTTGTGACGTCGAAAA
AGTCAAGGCTAGAGACAAAACGCTGAATGACGGAATGCCGGAACCGGAAT
AGCTGTTCCGGCCGGAATAGCTATTCCGCGGAATATGATTTTTTTTTATA
TTTTGTATTCCGCGGAATATGACTTTTTTTATTCCGCAGAATATGATTTT
ACTTATATCATGGATTTATCATAGAACNAATTAAGTAGTACAGTTAGGAA
CATTTGGCGAGTTCCTGTACGCGACCGCAATCAAAAAAATCATAAAAAAA
TTGTGTTTGTGTCTTTTTTTTGCCTAGATGATATAGCAAACATAGTAAGT
ATATATAAGTAGATTGTGCCTTTAATTGGCTGTAAAAAAATTATGCGTCG
GTAGAAATTTCTTCAACTTTCAACAATGATAGAACACACCTATTTAAAAA
AAATTAACCAGCGCATTTTTTATCTTTCTACTTCTTCATCTTCCATGAAG
CTCTTAAAGTTAAATAGAANTCCGCAGTAATGACACATTATTGTTCACCC
TCCTCCATTCACTAATAATCTTTCGTAAATTTTGTTATTGCATTTTTCAT
CAAAACACAGCTCTATACAATTCCCAAATGAGACTTAAACATCTCTCAAG
AGAGTCAAATGCATCAAATTGATTGCTAATGATATGTCGTTATGATNACA
TCAATTGTTTTCTAAAACAATGGAAAGACAATAGTTCGCTCTCCACCGTT
TTATTTGATGTTTATCCAGAGTTCTATGATAAATCCATGCTTATATCTTT
TCCTCCATAATCACCTACAAGGTGATTATGAGGGCTGTAGTAGAGGCCTC
AATTGGTCCAACCAGGGAACTTCGCCTGACTGCTTAGTCGGCCTTGAGCA
AGGTATAAATAGCCAGAAAAAGTCCCTGAAAAAGCACTCCATGGCCTCCA
TACATGCTCCACATCCACGNTTGGCTGGTCATATTGGGCGTTTTGGCGTT
ACCACCTCGAAGTGGGCGCCTTCGTCATTCCGCAACTCTGTCTACCATTT
TAAATGAGTTAAAAATAGATCCAAAAGGGTGCCCTCATCAAGAAAGATCA
TTTGCTTTGGTCTCCGGCTTTGGGAAGCAGTAATGTTTTATGATTGTTTT
CGATAGAAAATGGTAAGAAACTTAAGTTTACAAGTGTCATTCTGTTTTTC
CTGGCTGATAGAATGGCAGGATCCTGGATGGTTTCCCTAACTGTAGTATA
TATAACGAATCAATCGTAACAGGCATAGCAGGTTTTGTTTTCCCAGAGGA
GAACTAAAAATGACACATCACATTTAATGCGTGAGTGACTTTTTTAAGCT
AAATATTTCACATTTCTTTACATAATGGACATAATTCTGTAACTTTTTTG
TTACATTGTTTTAATTGATTTTCAGTTCATTTACTCCCAAGATAATTACT
TTGCACTTTTAACAACTTTCAAATCAGCAATCACTGTTTGTTACAATTCA
TTGCACATCGTGTCTTTTAGACGATTCCTATTTCAGATAACTTGAGCTCC
ACCGCAGATGATTGAAAAAGTCAATTCTTCAGGTGCTTCAACTTCACAAA
CTTCGCCAATCCTGGTGGTGATAAGATTTATATGAGAGTAATCGTCACAA
AAAGCGCGAATAACTTATTGAAAAATAGAGATTCCCAAGATTGGCGACGG
CATCTTAAATCTTGGTTAAAGAAAATCTCTTTGAACTTTCTTTTTTTTCT
TTTGTTAATTGCTTGCCTCATTGATGACTTGCAAGGTATTTATCAGGCCA
TATTTTAGAAAGTCAAGGCAGCGTCCGTTGGTGGCCAAAAAAGGCACTTT
TTCCAGTGTTTTCCACTAAAAAGGCTTTTTTTACCAGTATTTTAGTCATT
TCAAGAGGGGCAGCGCCCGATAACCAGACGCTTAAAGGGCATGAAAAATG
GCCTGTTTCTCATAATGAAAACACACAGATTTTACGAAGCTGTACGTGCC
CTCATTCGTTTGACGTGCCTTTGTGGTGGCCCTACGTTCCTTACTTACCT
ACGTGCTTGCGTGCCTGGCGTGCTCGCATGCTCACGTGTCTACGCGCCCT
CCGAAATTTGACGTGGTTTACGTGCCCGAAGTTTTGACGTGTGCTCAAAT
TTTGACGTGCCCTCGAATTTCGGCATGCCCTTAAATTTCAATGTACCCTC
AAATTTTGACGTGCCTTGCTTAAGTATTGACGTGCCTTCAAATTTTTACA
TGTTCTGGAAATCAAAAATTTGAGGGCACGTCAAAATTTGAGGGCACATG
AAAACTTGAGGGCACGTCAAAACCTGAGGGCACGTCACAATTCGAGGGCA
CATCAAAATTTGATATGAAGGCACGTCAAATTTCGGAGGGAACGTAAGCA
CGCAAGCCAATAGGCACGTAAGGCACAAAGGCACGTAGGGCACAAAGGCA
CTGATAAAAATGAGGGCACGTGGGCACGTAGAGCACGTCATTTTAACAGA
CTCATGTTCATTGCAGGAAATTGTTATTTTTGTTATAAAAGTTATTATGC
AAAATATATAATCGGTTGGTCTAAAAATATTCTTCCAATATGGGGGTAAC
CTCGGAAAAATTATTATATGATTATATGATTATATAACGTTATCATTATA
AAAGTCTATGCTGGAGTAATTACCGTGAGATTGGGTAACTTGCATCAGTG
GAGGCTAACATGCATAGCCCTCAAATGAAAGACCTGGTTGGTCATTAAAA
TACAAAGTTAAATCAAAACAAAAATGGTATCAGTAGAGCTGCGAGCGGAG
CTGCATAGTTCATTTGTTTTGAAATTTTGCTGCTTTGATTGGTCAGTCAT
TTGATGGCTGTGCAAGTTTCCCTCCACTGATGCAAGATACCCGACTTAAC
GGTAGTTATTCAAAAGACTGTTGTTGACTATAATTATTGTACTGTTGCAA
ATATATAAACGACAGCCTACGTTAGCTTTGGCCAGGATGGAACAATCTCT
CCACCCCACAAGGCCTACTTAGGTTTGTGAGAGATTATCTCATTCCAGAC
CTCCCTAATTTCTTGCTTCTTTCTTCTTTTTGACTCAGACTCCTCTAACA
GAAAACTTCCTTTCATGAAGACTAAATTTAATAACAGTGCTTGAAAATAA
TCTACAATATATATGTAAGCCCCGCTTTTTAAACTAACCCCCTTCCTTCC
TATCTCCACCCTTTTTCATGAAAATTTCTGATCCCCCTTCTTTATTCTCT
TGGAAGGAATCGTCTGAACTATGATGGGAAAGATAAAAGAGAAAAGACTA
GCCTAGTTTCTAATCCTGATATCCTTTTGATACACCCTGAGAGCTGATAG
TAAAGCTAGGCTAGACTTACCTCTTTTCTCCTTCCCATTTTAACAATAGA
CCTTTTGCTAGGATATCATGTTGAATTATTAAAAACTCCAGCATCAAAAC
AATGATAAGAAAATACACACTTGAAATAATTATGCATTAAAAATGTGCCA
TTGTTTTAATAATGATGGAGTTTTTAATTATTTAACATGACATCCTAACC
TGCAAAAGGTTACATACCTATATAAAATGCTTACATTAGTGGACACATAA
AACACATTAACAGAATTATTCCCCATTCAATATTTATATTGAAATCTGCA
ATAAAAATGAAAATTGTCTCTTCTAATCAGTGCTTCCGTTAGGCACTCCA
TGGGAAAGTCTTTTTTTAATTTCAACCAATGAGATTGCCACATATGATGA
TGAAGGTTAACAACTAGCCCTAATTTTGGCGCTACGGCTTTTGCGTTTTT
GGCAGAAACTCACTATTTTAATTTTATATGCAGAATTCTGTGATATGATA
AATGTAGTGCTAGAAGCCACACAAGGGTGTAATATCTTGCCTCTAATTTT
CAGGAAGCGCAGCTGAGAAGTCTGGATTATGTGTTGGTGATCGCGTTGTC
GAAGTCAATGAAGTCAATGTTGAAGCAATGTCTCATGGAGAAGTGGTCCA
ACAAATCCGCACTGATCCTAAAAAAGCTATTCTTTTGGTAGTGGATAAAA
TCACTGATAACTATTTGAAAAAGATTAACAGACCTGTTACATCTGCCCTT
GCCACTTATACTACTGTTCATGAAATTACAATAGAAGAAGCTGAGAAATT
ACAGGAGTTGAGACTCCAAGCTGAACAACAACAAAATGTTACTGATGATG
CTGATGATGATGGTAATACGCAATTGAGTGTTGAAGATGAAAATGTTGAA
TTACAAGATTCAGATTCGTTACCATCAAATGGTGAAGAGCCAGAAAATGA
GGCCCCTGGAGACACACCTGAGTCAGAGAAAATTTCATCTGTCCCAGGAG
ACATTGAATCTCCACCTCTAAATTCACATACATCAATCTCACCAGAACCA
GAAGAGCCTACTAATCAAGATCCACCACCTGAAGAATCCCAACCTGAAGA
ATCCCAACCTGATGAAAACATATCACAACCTGATGAAAACATATCACAAC
CAGATGAAAATATATCACAACTAGATGAAAATATATCACAACCAGAAGAT
CCAGATTATGCAATTCTAGAATCACCTCCACCAGAAAAGAGATCTGTGAT
AGAGTCTCCGGCAGAAAAGGGATCTGTGATAGAAGCACCGCAAGATGAAT
CAACAATGCCAGATTCTCCTCAACCAGAACAAGAATCTGCAGAGCCTGTT
GTNCAACAATGCTAGATTCTCCTCAACCAGAACGAGAATCTGCAGAGCCT
GTTGTTCCGATTGAGCAACAATTTAGTGTTCTTGAAGGAAAGAGCAAAAA
GCAACCACCAATCGATACAAAAGTTGTTGAAAAGGATTCTAATAAAGAAT
CTAAGAAGGACTCTTTTAAAAAGATGTTTATGAAAACACCGAAACGTAAA
GAAGTCAAACAGAATTCTGATTGGAGATCAAAATTGGATGAATTTAATAA
TTTGTAGAAATGTTGGTATGTGTGGCTTTCCAAATAATTTAGATCTAGAG
AAAAGTCTTGATTATTAGATGATGTAAGATTCAAAAGGCAAGATTACTAC
AAAATTGGAATATCTTTTTTTGAGATATCACTGTATTTGCTAACAGTTAG
ATTCATGGAATATAATATCAAAGAACTAATTTATCTTTTTAATACTATTT
TTTAGACTTTTAATTAACACTAGGTTTGAAGGTGTAGACCCTTACATTAT
AATGTGGGGTCAATTATTTGGAAAGAGAAGGAATTGTAGCAATTGAATAA
AATGCTGTCAAAATGGTCAATGTGCTATGTAGTAGTTAAAATTTGTGATT
TTTGTTTGACATTTCTTGACTTTCAAAGTCTGTAAAAACTGTTTTTTCTG
TCAACACGTAAATTATTAGCAATCTTAAAATCTTAGCATTAACTCTTTTC
TTTAGAACAAATTTAGAAATTAGAATTTAAATACTTGTTTTTTTATTTAT
AAGCATACAAAAATTTGAAAACAGGCTCCGAAATGCTCAGGTCGAAAGCT
TAAAAAGGCTGAAAAATGCTTGAGGGGATGCTTAAATCTAAACCTTAAAT
TTAAGGAAATACTGAAAATCCGTAAAATTCGAGCCAAAAAAAGCTAAAAT
CAGGAAAAAAACATTTTTCGTAGGCTCAAGTAATGCTTGCCATATGCTTA
ATTTTTTCCCATATCTGAGCCTAGATATGCTTATAAGTGCAATGCTTATA
AAAAAAAAACATGTACTCAAAATAAGCCTAAACCAAACGGACTGACACAA
AATGTCAAAACAGCATAATATCTAACGTCCATTAAAACGTTAAATGAATG
TTGAAACAACGTTATGTTCTGAAGTCAATTCGCTTTAGTGTGCACTCTTT
TTCGCGACCATACAAAAACCATGTTAGCGTAAAGGCTGATTCCTTTCAAG
CGGTTTCCATAATGGTAGAAAAAAAGATTGCACGCATTAAATAGCGAATG
GTGGACTTCAGGTTAGAATGAAGTGGTCGTTAAAGCAATACTTGGCCTGA
GATTTGCCTTTAGTCATATTAATTTTACGTTTTAATTTCGTAGTTTTACA
TAGTTTTCATTTTAAAGGTTTAAAATCTAGGGATAGATCTAATCTTCAAA
ATTTACTAGAAATCTTTTCATTCTAACATGTTTGCCAAATTACTGATAAT
TAGTATGTACGAATAGATGTCAGCTTGTTGTTAACAGATCTATCAAATCT
CTTATCAGCACATGTTTTTAAATGTGTTTATTAGCATTATGTCATACTTG
TCATCAGTAATATTTTTCACAGGGAAGTTTCTACTATCTCATTAATTATC
GATCAAAGAGATTTTTTTTCAAGGTACATGAAAAAGATGGTAAAATACTT
CTGTTTGACAAGAATAAGCGAGAAGAATAGTTTTTAAGAACACGAACGAG
GCTCAAAAGCGCCAAGAAATAAGAACAATTTGAGGACAATCCTGAGCCTT
GAATGATTGATTCTTAAGAAAATCTAAACTTAGTAGAATGAGTTAAGACT
ACCTCAAATCACCCTTAATATAAGAGAATGCTGAGTAAAATTCGAGGCTC
AAAGTGCCAATTTTTGAAGACCTTAGCACGTGAAGCTATATATATGCTTT
AGATATAGATAAAGCCATTTTATGTTTTATCCAAGATAATATTTTTAAAA
CCAATACTATATTGTTTAGCCAATGTATGATAATTTTAAAAATGGCAACT
AATTTTTAATTTTCCATTATTCTGCTATTTAGACTCGGTAAAAATTTTAA
TGCGGGGGTAACTTTTCTTTAATTTTCAATTTTTATGTTTTAAAGGTAAT
TCATTTATATTATAGGAAAATATTATTCCACGAAATTTTATATCATATAG
ATCAACAGTTATATTATAATACATCTTTCAATTATTCGACTTTTAAAAAT
CTATTGAATCTTTTCTTACGAAGTAACATGTAGCACTTAACTCCAGTCCC
TTAATTGAGTTCATAATTTTATCAGAGCTTTAAGAATTTTGCTACAATCG
GCGCCGAAATATTTGGCAAAAAAGGGGAATTCTCTTAAAACTTTAAAACC
GCAAGTGATTTTTAAGTGCTTTGAAGTACAGTTCGGAAGTAGAGTTTTAA
TTCTGAGTATTGAAATTAGACTTAAGAGTTTGGACCTTAGGATTTCAGGT
TCTAAAAGCTCAAAAATGTTCCAATAAGGCAGAGAATATAGTCTGGAAGC
CACTCCTAAATTGAAAAATTCCGATGAAGCAAAGTGGAAATACTGAACCT
GCAATTCTCGCTTTGACCTTTAAATTCTGAAAAACGTTAAAATACCAAAA
ATGGTCAATATTTTTCGGTGCTGATTGTAGCTACAAGCCCAATCTAACAA
AAGGTATCTATCAAACCTTTAAACTTTTTTACTGGGGCCATTCCCTTTCA
TGCAAGAAAAATTTCCAGAAAAAAATTCAGGGGGTAATTACATGTGGCTT
GAAAAGGTTAGTCCATCCCTCTTATGAATACTAAATGGAGTAGGACCCCT
CACGAGACTAGTCTGTACACAAACCCGATATCTACGGCTAATTTCAAAAT
TCATTGCACTAGGCTACGATAATCGTGAGATACACTCTGGTACAGATTAT
CACGAGACCATCTCTTCTAATTTTTGGTTTCGTCACGATTGCGAAAATTT
CCTGATCCCGCATCATGCAAGAAAGAAGCCTCATCAGTCACGCTAATCGC
CCTGGGATGGGAGCGATTGTATACATCTTAATTACCTATTACTTCATTCT
TGAATGATAAGAGATTTTGTAAATAAAATTTTTCTTTTGATTATTTCACT
ACAAAAATCAAAATATATACATTTTAATACTTTATAATATCTTCATAAAA
GTGGAAAAAAATAATAACATCTTTGTCATAAGTTATATATTGTACATGAT
TGTTTCGAAAATGTCTATTTGGGATACCAATTTGGGACACCTTTTTGATT
TCAGAGTCACCCA Coding sequence (CDS) from alignment at scaffold_102:232213..241025- >TCONS_00045878 ID=TCONS_00045878|Name=TCONS_00045878|organism=Clytia hemisphaerica|type=CDS|length=1884bp|location=Sequence derived from alignment at scaffold_102:232213..241025- (Clytia hemisphaerica)
GAAGCGCAGCTGAGAAGTCTGGATTATGTGTTGGTGATCGCGTTGTCGAA
GTCAATGAAGTCAATGTTGAAGCAATGTCTCATGGAGAAGTGGTCCAACA
AATCCGCACTGATCCTAAAAAAGCTATTCTTTTGGTAGTGGATAAAATCA
CTGATAACTATTTGAAAAAGATTAACAGACCTGTTACATCTGCCCTTGCC
ACTTATACTACTGTTCATGAAATTACAATAGAAGAAGCTGAGAAATTACA
GGAGTTGAGACTCCAAGCTGAACAACAACAAAATGTTACTGATGATGCTG
ATGATGATGGTAATACGCAATTGAGTGTTGAAGATGAAAATGTTGAATTA
CAAGATTCAGATTCGTTACCATCAAATGGTGAAGAGCCAGAAAATGAGGC
CCCTGGAGACACACCTGAGTCAGAGAAAATTTCATCTGTCCCAGGAGACA
TTGAATCTCCACCTCTAAATTCACATACATCAATCTCACCAGAACCAGAA
GAGCCTACTAATCAAGATCCACCACCTGAAGAATCCCAACCTGAAGAATC
CCAACCTGATGAAAACATATCACAACCTGATGAAAACATATCACAACCAG
ATGAAAATATATCACAACTAGATGAAAATATATCACAACCAGAAGATCCA
GATTATGCAATTCTAGAATCACCTCCACCAGAAAAGAGATCTGTGATAGA
GTCTCCGGCAGAAAAGGGATCTGTGATAGAAGCACCGCAAGATGAATCAA
CAATGCCAGATTCTCCTCAACCAGAACAAGAATCTGCAGAGCCTGTTGTN
CAACAATGCTAGATGGGTGAAGATGTTGGCTTGGTCAAAGCTCCCAGAAT
TTGTGAAATGATCCGAGAGGAGTCGGGTTATGGATTCAATCTTCACGGAG
AAAAAGGAGTTATTGGTCAATACATAAGTGCAATCGACCCAGGAAGCGCA
GCTGAGAAGTCTGGATTATGTGTTGGTGATCGCGTTGTCGAAGTCAATGA
AGTCAATGTTGAAGCAATGTCTCATGGAGAAGTGGTCCAACAAATCCGCA
CTGATCCTAAAAAAGCTATTCTTTTGGTAGTGGATAAAATCACTGATAAC
TATTTGAAAAAGATTAACAGACCTGTTACATCTGCCCTTGCCACTTATAC
TACTGTTCATGAAATTACAATAGAAGAAGCTGAGAAATTACAGGAGTTGA
GACTCCAAGCTGAACAACAACAAAATGTTACTGATGATGCTGATGATGAT
GGTAATACGCAATTGAGTGTTGAAGATGAAAATGTTGAATTACAAGATTC
AGATTCGTTACCATCAAATGGTGAAGAGCCAGAAAATGAGGCCCCTGGAG
ACACACCTGAGTCAGAGAAAATTTCATCTGTCCCAGGAGACATTGAATCT
CCACCTCTAAATTCACATACATCAATCTCACCAGAACCAGAAGAGCCTAC
TAATCAAGATCCACCACCTGAAGAATCCCAACCTGAAGAATCCCAACCTG
ATGAAAACATATCACAACCTGATGAAAACATATCACAACCAGATGAAAAT
ATATCACAACTAGATGAAAATATATCACAACCAGAAGATCCAGATTATGC
AATTCTAGAATCACCTCCACCAGAAAAGAGATCTGTGATAGAGTCTCCGG
CAGAAAAGGGATCTGTGATAGAAGCACCGCAAGATGAATCAACAATGCCA
GATTCTCCTCAACCAGAACAAGAATCTGCAGAGCCTGTTGTNCAACAATG
CTAGATGGGTGAAGATGTTGGCTTGGTCAAAGCTCCCAGAATTTGTGAAA
TGATCCGAGAGGAGTCGGGTTATGGATTCAATCTTCACGGAGAAAAAGGA
GTTATTGGTCAATACATAAGTGCAATCGACCCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00045878-exon-scaffold_102-1575043694:240894..241025 | TCONS_00045878-exon-scaffold_102-1575043694:240894..241025 | Clytia hemisphaerica | exon |
| TCONS_00045878-exon-scaffold_102-1575043694:232213..236272 | TCONS_00045878-exon-scaffold_102-1575043694:232213..236272 | Clytia hemisphaerica | exon |
| TCONS_00045878-exon-scaffold_102-1510915933:240894..241025 | TCONS_00045878-exon-scaffold_102-1510915933:240894..241025 | Clytia hemisphaerica | exon |
| TCONS_00045878-exon-scaffold_102-1510915933:232213..236272 | TCONS_00045878-exon-scaffold_102-1510915933:232213..236272 | Clytia hemisphaerica | exon |
| TCONS_00045878-exon-scaffold_102-1491911889:240894..241025 | TCONS_00045878-exon-scaffold_102-1491911889:240894..241025 | Clytia hemisphaerica | exon |
| TCONS_00045878-exon-scaffold_102-1491911889:232213..236272 | TCONS_00045878-exon-scaffold_102-1491911889:232213..236272 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_102 | supercontig | scaffold_102:232213..241025 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR001478 | PDZ |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
BLAST of TCONS_00045878 vs. Swiss-Prot (Human)
Match: NHRF2 (Na(+)/H(+) exchange regulatory cofactor NHE-RF2 OS=Homo sapiens GN=SLC9A3R2 PE=1 SV=2) HSP 1 Score: 87.8113 bits (216), Expect = 2.968e-18 Identity = 50/100 (50.00%), Postives = 68/100 (68.00%), Query Frame = 3
Query: 33 PRICEMIREESGYGFNLHGEKGVIGQYISAIDPGSAAEKSGLCVGDRXXXXXXXXXXAMSHGEVVQQIRTDPKKAILLVVDKITDNYLKKINRPVTSALA 332
PR+C ++R E GYGF+LHGEKG GQ+I ++PGS AE + L GDR+VEVN VNVE +H +VVQ+I+ + LLVVD+ TD L++ T +A
Sbjct: 9 PRLCRLVRGEQGYGFHLHGEKGRRGQFIRRVEPGSPAEAAALRAGDRLVEVNGVNVEGETHHQVVQRIKAVEGQTRLLVVDQETDEELRRRQLTCTEEMA 108 HSP 2 Score: 80.8777 bits (198), Expect = 4.926e-16 Identity = 45/92 (48.91%), Postives = 60/92 (65.22%), Query Frame = 3
Query: 33 PRICEMIREESGYGFNLHGEKGVIGQYISAIDPGSAAEKSGLCVGDRXXXXXXXXXXAMSHGEVVQQIRTDPKKAILLVVDKITDNYLKKIN 308
PR+C + + GYGFNLH +K GQYI ++DPGS A +SGL DR++EVN NVE + H EVV I+ +A LLVVD TD + K++
Sbjct: 149 PRLCHLRKGPQGYGFNLHSDKSRPGQYIRSVDPGSPAARSGLRAQDRLIEVNGQNVEGLRHAEVVASIKAREDEARLLVVDPETDEHFKRLR 240
The following BLAST results are available for this feature:
|
