TCONS_00045213 (transcript) - C. hemisphaerica

Overview
NameTCONS_00045213
Unique NameTCONS_00045213
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length421

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00045213 ID=TCONS_00045213|Name=TCONS_00045213|organism=Clytia hemisphaerica|type=transcript|length=421bp
GTGCGTCATGATTATATGAATGAAATTGCTAATAGTGTGGACATTGATCT
GGCATTTCAACTTggtgttttggaaatgaaacgATTCTTCAATAACATGC
CACAAGTGGCTTTGGATAAGAAATCAAATCTCGATTTTATCGAGAAAGAA
ATTGGTCTGCAAAGATTTTTACCAAACAAAGTACTTGATACGATGAAGAG
TAAAGACATCAGGAAAGGAATACAAAAACTATTCAAACAATATGCTGAAT
TTAAAGAGGACACGTGCTGCTTTGAGTTTTATACACTGTTGAAAAGTGTT
TACAGATTTGATTTGGAGGTTTATAAATGCTCACTTGGGGGTGCTTGGTC
AATACCTGTCGAAGTTCTTGTCGGTCCAAGTGATGGAATAAGTTACAGAC
CAGAACAAGCTTCAAAGGTAA
Run BLAST on NCBI

protein sequence of TCONS_00045213-protein

>TCONS_00045213-protein ID=TCONS_00045213-protein|Name=TCONS_00045213-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
VRHDYMNEIANSVDIDLAFQLGVLEMKRFFNNMPQVALDKKSNLDFIEKE
IGLQRFLPNKVLDTMKSKDIRKGIQKLFKQYAEFKEDTCCFEFYTLLKSV
YRFDLEVYKCSLGGAWSIPVEVLVGPSDGISYRPEQASKV
Run BLAST on NCBI

transcript from alignment at sc0007202:110..940+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00045213 ID=TCONS_00045213|Name=TCONS_00045213|organism=Clytia hemisphaerica|type=transcript|length=831bp|location=Sequence derived from alignment at sc0007202:110..940+ (Clytia hemisphaerica)
GTGCGTCATGATTATATGAATGAAATTGCTAATAGTGTGGACATTGATCT
GGCATTTCAACTTggtgttttggaaatgaaacgATTCTTCAATAACATGC
CACAAGTGGCTTTGGATAAGAAATCAAATCTCGATTTTATCGAGTAAGAA
TTTTTctaatgaattttctttttctttgagaAACCTGTTGTTAATGTGTT
TCATAATGATATATTTTAAAGATTAAtatgtttcatttgaatttcTTACA
GGAAAGAAATTGGTCTGCAAAGATTTTTACCAAACAAAGTACTTGATACG
ATGAAGGTAATTATTTATTATGATATTATTGATGTCAATTACTTTATGAA
ATACACTAAATTTTGGTACTTTGTAGTGTGGATCTATTCAGCTAGTCAGG
TCCCTTGCTGGAAAATGtaatcatcgtctgtctgtttaTTTCTAGAGTAA
AGACATCAGGAAAGGAATACAAAAACTATTCAAACAATATGCTGAATTTA
AAGAGGACACGTGCTGCTTTGAGTTTTATACACTGTTGAAAAGTGTTTAC
AGATTTGATTTGGAGGTTTATAAATGCTCACTTGGGGTAAGACTtgttaa
attaaaaaagtttttaagtactgtactgaaataaaattgaacttAGACCA
AATCACCAAATATTTACCTTACACTTTTatatgattttgtttttctttgt
gcACCTAAAATTGacatatttgataaattttactaAACATTGTTTTAAGG
GTGCTTGGTCAATACCTGTCGAAGTTCTTGTCGGTCCAAGTGATGGAATA
AGTTACAGACCAGAACAAGCTTCAAAGGTAA

Coding sequence (CDS) from alignment at sc0007202:110..940+

>TCONS_00045213 ID=TCONS_00045213|Name=TCONS_00045213|organism=Clytia hemisphaerica|type=CDS|length=1680bp|location=Sequence derived from alignment at sc0007202:110..940+ (Clytia hemisphaerica)
GTGCGTCATGATTATATGAATGAAATTGCTAATAGTGTGGACATTGATCT
GGCATTTCAACTTggtgttttggaaatgaaacgATTCTTCAATAACATGC
CACAAGTGGCTTTGGATAAGAAATCAAATCTCGATTTTATCGAGAAAGAA
ATTGGTCTGCAAAGATTTTTACCAAACAAAGTACTTGATACGATGAAGAG
TAAAGACATCAGGAAAGGAATACAAAAACTATTCAAACAATATGCTGAAT
TTAAAGAGGACACGTGCTGCTTTGAGTTTTATACACTGTTGAAAAGTGTT
TACAGATTTGATTTGGAGGTTTATAAATGCTCACTTGGGGGTGCTTGGTC
AATACCTGTCGAAGTTCTTGTCGGTCCAAGTGATGGAATAAGTTACAGAC
CAGAACAAGCTTCAAAGGTAGTGCGTCATGATTATATGAATGAAATTGCT
AATAGTGTGGACATTGATCTGGCATTTCAACTTggtgttttggaaatgaa
acgATTCTTCAATAACATGCCACAAGTGGCTTTGGATAAGAAATCAAATC
TCGATTTTATCGAGAAAGAAATTGGTCTGCAAAGATTTTTACCAAACAAA
GTACTTGATACGATGAAGAGTAAAGACATCAGGAAAGGAATACAAAAACT
ATTCAAACAATATGCTGAATTTAAAGAGGACACGTGCTGCTTTGAGTTTT
ATACACTGTTGAAAAGTGTTTACAGATTTGATTTGGAGGTTTATAAATGC
TCACTTGGGGGTGCTTGGTCAATACCTGTCGAAGTTCTTGTCGGTCCAAG
TGATGGAATAAGTTACAGACCAGAACAAGCTTCAAAGGTAGTGCGTCATG
ATTATATGAATGAAATTGCTAATAGTGTGGACATTGATCTGGCATTTCAA
CTTggtgttttggaaatgaaacgATTCTTCAATAACATGCCACAAGTGGC
TTTGGATAAGAAATCAAATCTCGATTTTATCGAGAAAGAAATTGGTCTGC
AAAGATTTTTACCAAACAAAGTACTTGATACGATGAAGAGTAAAGACATC
AGGAAAGGAATACAAAAACTATTCAAACAATATGCTGAATTTAAAGAGGA
CACGTGCTGCTTTGAGTTTTATACACTGTTGAAAAGTGTTTACAGATTTG
ATTTGGAGGTTTATAAATGCTCACTTGGGGGTGCTTGGTCAATACCTGTC
GAAGTTCTTGTCGGTCCAAGTGATGGAATAAGTTACAGACCAGAACAAGC
TTCAAAGGTAGTGCGTCATGATTATATGAATGAAATTGCTAATAGTGTGG
ACATTGATCTGGCATTTCAACTTggtgttttggaaatgaaacgATTCTTC
AATAACATGCCACAAGTGGCTTTGGATAAGAAATCAAATCTCGATTTTAT
CGAGAAAGAAATTGGTCTGCAAAGATTTTTACCAAACAAAGTACTTGATA
CGATGAAGAGTAAAGACATCAGGAAAGGAATACAAAAACTATTCAAACAA
TATGCTGAATTTAAAGAGGACACGTGCTGCTTTGAGTTTTATACACTGTT
GAAAAGTGTTTACAGATTTGATTTGGAGGTTTATAAATGCTCACTTGGGG
GTGCTTGGTCAATACCTGTCGAAGTTCTTGTCGGTCCAAGTGATGGAATA
AGTTACAGACCAGAACAAGCTTCAAAGGTA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028796XLOC_028796Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045213-exon-sc0007202-1491911889:110..252TCONS_00045213-exon-sc0007202-1491911889:110..252Clytia hemisphaericaexon
TCONS_00045213-exon-sc0007202-1510915933:110..252TCONS_00045213-exon-sc0007202-1510915933:110..252Clytia hemisphaericaexon
TCONS_00045213-exon-sc0007202-1575043694:110..252TCONS_00045213-exon-sc0007202-1575043694:110..252Clytia hemisphaericaexon
TCONS_00045213-exon-sc0007202-1491911889:361..415TCONS_00045213-exon-sc0007202-1491911889:361..415Clytia hemisphaericaexon
TCONS_00045213-exon-sc0007202-1510915933:361..415TCONS_00045213-exon-sc0007202-1510915933:361..415Clytia hemisphaericaexon
TCONS_00045213-exon-sc0007202-1575043694:361..415TCONS_00045213-exon-sc0007202-1575043694:361..415Clytia hemisphaericaexon
TCONS_00045213-exon-sc0007202-1491911889:555..695TCONS_00045213-exon-sc0007202-1491911889:555..695Clytia hemisphaericaexon
TCONS_00045213-exon-sc0007202-1510915933:555..695TCONS_00045213-exon-sc0007202-1510915933:555..695Clytia hemisphaericaexon
TCONS_00045213-exon-sc0007202-1575043694:555..695TCONS_00045213-exon-sc0007202-1575043694:555..695Clytia hemisphaericaexon
TCONS_00045213-exon-sc0007202-1491911889:859..940TCONS_00045213-exon-sc0007202-1491911889:859..940Clytia hemisphaericaexon
TCONS_00045213-exon-sc0007202-1510915933:859..940TCONS_00045213-exon-sc0007202-1510915933:859..940Clytia hemisphaericaexon
TCONS_00045213-exon-sc0007202-1575043694:859..940TCONS_00045213-exon-sc0007202-1575043694:859..940Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00045213-proteinTCONS_00045213-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0007202supercontigsc0007202:110..940 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.13588	7.56544	6.24606	4.23713	41.3387	33.1701	31.6274	38.4717	10.9253	15.3996	13.1572	8.76798	9.28562	6.43153	10.8282	9.33943	13.2568	19.0286	9.52047	13.0919	19.0488	20.931	14.2097	24.4494	21.2015	20.6858	14.3915	7.56634	21.5551	22.1676
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014352FERM/acyl-CoA-bd_prot_3-hlx
IPR000299FERM_domain
IPR019748FERM_central
IPR011993PH_dom-like
Vocabulary: Cellular Component
TermDefinition
GO:0005856cytoskeleton
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0005856 cytoskeleton
Blast
[Close]
BLAST of TCONS_00045213 vs. Swiss-Prot (Human)
Match: FAK1 (Focal adhesion kinase 1 OS=Homo sapiens GN=PTK2 PE=1 SV=2)

HSP 1 Score: 137.502 bits (345), Expect = 1.630e-37
Identity = 62/132 (46.97%), Postives = 94/132 (71.21%), Query Frame = 1 
Query:    1 VRHDYMNEIANSVDIDLAFQLGVLEMKRFFNNMPQVALDKKSNLDFIEKEIGLQRFLPNKVLDTMKSKDIRKGIQKLFKQYAEFKEDTCCFEFYTLLKSVYRFDLEVYKCSLGGAWSIPVEVLVGPSDGISY 396
            V+ DYM EIA+ VD ++A +LG LE++R +  M   AL+KKSN + +EK++GL+RF P  +LD++K+K +RK IQ+ F+Q+A    +    +F+ +L  VYRFD E +KC+LG +W I VE+ +GP +GISY
Sbjct:  151 VKSDYMLEIADQVDQEIALKLGCLEIRRSYWEMRGNALEKKSNYEVLEKDVGLKRFFPKSLLDSVKAKTLRKLIQQTFRQFANLNREESILKFFEILSPVYRFDKECFKCALGSSWIISVELAIGPEEGISY 282
The following BLAST results are available for this feature:
BLAST of TCONS_00045213 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
FAK11.630e-3746.97Focal adhesion kinase 1 OS=Homo sapiens GN=PTK2 PE... [more]
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