TCONS_00044764 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044764
Unique NameTCONS_00044764
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length622

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044764 ID=TCONS_00044764|Name=TCONS_00044764|organism=Clytia hemisphaerica|type=transcript|length=622bp
CTCCCTGGACACATCTAACCTCAAAGCTTCCTCAATTGAACGCCCTGAAC
ACAACTAACCTCAAAGCTTCCTCAATTGAGCTCCCTGGGCACAACTTACC
TCGAAGCGTCCTCAATTGAACGCCCTGGACACAACTTACCTCGAAGCTTC
CTCAATTGAACACCCTGCGCACAACTAACCTCAAAGCTTCCTCAATTGAA
CGCCCTGGACACAACTTACCTCGATATCTTCCTCAATTGAGCTCCCTGGA
TACAACTAACCTGGAAGCTTCCTCAATTGAGCTCCCTGGGCATAACTAAC
CTCAAAGCTTCCTTAATTGAACGCCCTGGACACAACTTACCTCAAAGCTT
CCTCAATTGAACGCCCTGGACACAACTTACCTCAATATCTTCCTTGTTCT
CCAACAAAGGAGCCTCCATAATATTCTTCAATAAGAACGTTTCACTTTCC
ACATCAAACTGGTGATCTGGTAATCTCACCAATCTTCTTCCAATGTCTCG
CTTTCATTGCTTTGTTTGCCATCATCTCCAGTAGTGGGCAactttcattg
aaatcatcaatCTGTTTCTTGAGATCAAGGTAGGCTTGCCAGTCTTTAAG
ACCACGTGGAAGCTTTCGACAT
Run BLAST on NCBI

transcript from alignment at sc0006173:345..966

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044764 ID=TCONS_00044764|Name=TCONS_00044764|organism=Clytia hemisphaerica|type=transcript|length=622bp|location=Sequence derived from alignment at sc0006173:345..966 (Clytia hemisphaerica)
ATGTCGAAAGCTTCCACGTGGTCTTAAAGACTGGCAAGCCTACCTTGATC
TCAAGAAACAGattgatgatttcaatgaaagtTGCCCACTACTGGAGATG
ATGGCAAACAAAGCAATGAAAGCGAGACATTGGAAGAAGATTGGTGAGAT
TACCAGATCACCAGTTTGATGTGGAAAGTGAAACGTTCTTATTGAAGAAT
ATTATGGAGGCTCCTTTGTTGGAGAACAAGGAAGATATTGAGGTAAGTTG
TGTCCAGGGCGTTCAATTGAGGAAGCTTTGAGGTAAGTTGTGTCCAGGGC
GTTCAATTAAGGAAGCTTTGAGGTTAGTTATGCCCAGGGAGCTCAATTGA
GGAAGCTTCCAGGTTAGTTGTATCCAGGGAGCTCAATTGAGGAAGATATC
GAGGTAAGTTGTGTCCAGGGCGTTCAATTGAGGAAGCTTTGAGGTTAGTT
GTGCGCAGGGTGTTCAATTGAGGAAGCTTCGAGGTAAGTTGTGTCCAGGG
CGTTCAATTGAGGACGCTTCGAGGTAAGTTGTGCCCAGGGAGCTCAATTG
AGGAAGCTTTGAGGTTAGTTGTGTTCAGGGCGTTCAATTGAGGAAGCTTT
GAGGTTAGATGTGTCCAGGGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028376XLOC_028376Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044764-exon-sc0006173-1491911889:345..966TCONS_00044764-exon-sc0006173-1491911889:345..966Clytia hemisphaericaexon
TCONS_00044764-exon-sc0006173-1510915933:345..966TCONS_00044764-exon-sc0006173-1510915933:345..966Clytia hemisphaericaexon
TCONS_00044764-exon-sc0006173-1575043694:345..966TCONS_00044764-exon-sc0006173-1575043694:345..966Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006173supercontigsc0006173:345..966 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.257708	0	0.646653	0.666098	2.78026	1.83084	0.662648	0.82715	0.828118	0.537988	0.825015	1.28663	0.829837	1.444	0	0	0.0806532	0.0660968	0	0.0982777	0	0	0	0	0.184459	2.05782	0	0.125708	0	0.0971416
Blast
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BLAST of TCONS_00044764 vs. Swiss-Prot (Human)
Match: DYH8 (Dynein heavy chain 8, axonemal OS=Homo sapiens GN=DNAH8 PE=1 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.426e-30
Identity = 42/54 (77.78%), Postives = 49/54 (90.74%), Query Frame = -2 
Query:  460 CRKLPRGLKDWQAYLDLKKQIDDFNESCPLLEMMANKAMKARHWKKIGEITRSP 621
            CRKLP+GLKDWQA+LDLKK+IDDF+ESCPLLEMM NKAMK RHW +I E+T +P
Sbjct: 1319 CRKLPKGLKDWQAFLDLKKRIDDFSESCPLLEMMTNKAMKQRHWDRISELTGTP 1372

HSP 2 Score: 51.6026 bits (122), Expect = 1.426e-30
Identity = 24/52 (46.15%), Postives = 36/52 (69.23%), Query Frame = -3 
Query:  330 RLVRLPDHQFDVESETFLLKNIMEAPLLENKEDIEVSCVQGVQLRKL*GKLC 485
            R+  L    FDVES++F L+NIMEAPLL++K+DIE  C+  ++ + +  KL 
Sbjct: 1364 RISELTGTPFDVESDSFCLRNIMEAPLLKHKDDIEDICISAIKEKDIEAKLT 1415
The following BLAST results are available for this feature:
BLAST of TCONS_00044764 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
DYH81.426e-3077.78Dynein heavy chain 8, axonemal OS=Homo sapiens GN=... [more]
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