TCONS_00044763 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044763
Unique NameTCONS_00044763
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length383

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044763 ID=TCONS_00044763|Name=TCONS_00044763|organism=Clytia hemisphaerica|type=transcript|length=383bp
ATCATCAAACGTGAACCACCAAGACGTCAAGATTCCACCTACCAATATTT
TATCCCACCACAGCGGCCATATGGCTGTATGTAAAGCTCATGGCCCACCA
TATAATACATCTGCAGCCTTGACACCTCAGTCAAACATCACAGATGATGA
TGGCCCAAGTTACAAGAAATATCGCTCATGTACCTCAACCAAGGAACCTT
CTACTCCAACTTCCAGAGAACTCAAGACTCTTGAAGCTGACAGGCCCATT
GGTTATGGTGCATTTGGTGTTGTCTGggCTGTTACTGACCCTCGAACTGG
GAAAAGGATTGCTTTGAAAAAGATGCCAAATGTATTTCAGAATATTGTCT
CAAGTAAAAGAGTTTATCGAGAACTAAGAATGT
Run BLAST on NCBI

protein sequence of TCONS_00044763-protein

>TCONS_00044763-protein ID=TCONS_00044763-protein|Name=TCONS_00044763-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
SSNVNHQDVKIPPTNILSHHSGHMAVCKAHGPPYNTSAALTPQSNITDDD
GPSYKKYRSCTSTKEPSTPTSRELKTLEADRPIGYGAFGVVWAVTDPRTG
KRIALKKMPNVFQNIVSSKRVYRELRM
Run BLAST on NCBI

transcript from alignment at sc0006168:1..2376-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044763 ID=TCONS_00044763|Name=TCONS_00044763|organism=Clytia hemisphaerica|type=transcript|length=2376bp|location=Sequence derived from alignment at sc0006168:1..2376- (Clytia hemisphaerica)
ATCATCAAACGTGAACCACCAAGACGTCAAGATTCCACCTACCAATATTT
TATCCCACCACAGCGGCCATATGGCTGTATGTAAAGCTCATGGCCCACCA
TATAATACATCTGCAGCCTTGACACCTCAGTCAAACATCACAGATGATGA
TGGCCCAAGTTACAAGAAATATCGCTCATGTACCTCAACCAAGGAACCTT
CTACTCCAACTTCCAGAGAACTCAAGACTCTTGAAGCTGACAGGCCCATT
GGTTATGGTGCATTTGGTGTTGTCTGGTAAGTGAATTGCTATATGCTGTC
TAACTTTGTCATTGAAAGATTTTATTTATACAATGTATGGCTGCTTATTT
AAAATATATTTTTTCTTCCCCACCAATCAAATAACTTCAAACTGGGTTAT
TCAAAAAACAGGGCTGTAAAACAGCTATGGATGTCGGTCATGAGGAAAGA
ACCTCATAGAAAAGTTTCTTCGATCAATTACTTTGTATGGTTGAAACAGC
CCATTCTACATGAGTTGAAAAAGTAGTTTTTCAAGACCTTTCCTATTGTT
CAAGTTCACTCAGGCCTGTAAACTTCAAATTCAAAATTTCCAAGGCGAGA
GAAGAAAATGTATGTATTTCCAAGGCAATTGAATTAAAAAACGCGAAAAA
GAGTGGAATTTCCGATGCATTTTGCAAAAGTACATGAATTTTTATTGGAA
TTTCTGACCACCACTGGAAAAAAAAAAATATTTCTGAGGCTAGAAAAAAT
TAAAAAATGTAGTCCGATGGGGGGTAACAAAAATTTTCTGGAATGGCCCA
CTTTAAGACGAGGCCAATTTGATATGTTGTTTTACGGGCCAAGCTACCCA
AAAAAGAGCCAAAAAAGATGGAAGGTCGGTCAGCAAAAAAATAAAAATAA
AAGTAGAATTTTACCTATGAAATTTAAAACTACTGCATCTTGACAAAAAA
GGGAAATAGAAAATTAAAAGGCACAAAAAGGTCAAATTCATGGCTAAAAT
GAAAAATTTAACATAAAATACTTACTAAATTGTTACCTGTGTTACTTATT
CTCAAAACCTTGGAAAAACTATTGAAATTGACAAAAAAACAATTCACTCT
ATTAAGAATTAGTGAATACTGTAAGAAAACTGAAACAAGAAAAATAAAAA
GCAAGAAGGTACGGTAAATACTGTTACACCGGTCAATACAGCACCACCCA
CTTAATGAGTGGTCCTTGTTGGTTGCTGGTATTTGATTTTGGAGTCTTTA
TTAGCAATGAAAATACTGAAGAAATTTTGGCTGGTGCAATTTGGTGTAAT
TTATTTTGGCAATTTAATAAAATTTCTAAATTTGGCAAGAATTAATTTTG
AGACCCATTTTTGCTTAATATTTTAGAGGGAAAAAAAGGTTTTTTCGGGG
AAATAGAGACTAAATTGAAAGAAAATTAGATTTTCTGAAATTTTAATTTG
ACGGAAAGAAATTTCTTCCCTTAAGTTAAAGATGTACTACCAAAATGATT
TTTATTTTTATTTTTGGAATTTCAAAACAACTAATCAAATTGGTCCATCC
TAATTAACTATAATTCTATCTATTTTTTTCACCATTTTTCCACAAGGGAA
AGACAAGCCATAGCTGTCACTCTCCCCAGCATGTGAGACTCCAACGCACA
CAACATTAAATTCTCCTATTGTCTGTTCAGTCTATTGAGCCAAACTTTGG
TTAGGAAAGGTGGCTTTGAGCTTATAACTTTTTTCAGGGTTTTTAATATC
AAAATTGGAAAAAATTCTGTTTAATAAAGTTTAACATATTCACAAAAGCT
AGTTGCGACACTGTTACTTTAAAGAATAGCTCAAAAACCAAATTTCCCTT
GAGTTTGAATAAAAAACAGGAATTGGGCTCATTTACAGGACAGTGGAAGG
CAACATACAAAATGAATCATTTGAACCTTATGCAAATAGGGAAAAGTGTA
TTCAATTTGATTTAGAACAGCATGTATAGAGTGCAATTGAATTGTTCCTG
ACCTTGGCGTTTTTTTGCAAGAAAATCCTGTAAATGGGACAATTTCATGT
TTGAATTTAAATGTTTTTTGAACTCAAGAAAAAGTAGGTTTCAAAATTGA
AAATCAGATTGGCCAAAAACCTTGGCTTCAATTTTTGAATTGGCATACAT
TTTTTTAAGAAGAAGAATCCTTGGCATTTTCTGAACAATTTTATAATGGC
CCTTAGTGGTTTTGATTTTAACGTTATTTTTATATCTCTTATTATAATTT
TTCATTTTTGTTATTTTAGGGCTGTTACTGACCCTCGAACTGGGAAAAGG
ATTGCTTTGAAAAAGATGCCAAATGTATTTCAGAATATTGTCTCAAGTAA
AAGAGTTTATCGAGAACTAAGAATGT

Coding sequence (CDS) from alignment at sc0006168:1..2376-

>TCONS_00044763 ID=TCONS_00044763|Name=TCONS_00044763|organism=Clytia hemisphaerica|type=CDS|length=762bp|location=Sequence derived from alignment at sc0006168:1..2376- (Clytia hemisphaerica)
GGCTGTTACTGACCCTCGAACTGGGAAAAGGATTGCTTTGAAAAAGATGC
CAAATGTATTTCAGAATATTGTCTCAAGTAAAAGAGTTTATCGAGAACTA
AGAATGTCATCAAACGTGAACCACCAAGACGTCAAGATTCCACCTACCAA
TATTTTATCCCACCACAGCGGCCATATGGCTGTATGTAAAGCTCATGGCC
CACCATATAATACATCTGCAGCCTTGACACCTCAGTCAAACATCACAGAT
GATGATGGCCCAAGTTACAAGAAATATCGCTCATGTACCTCAACCAAGGA
ACCTTCTACTCCAACTTCCAGAGAACTCAAGACTCTTGAAGCTGACAGGC
CCATTGGTTATGGTGCATTTGGTGTTGTCTGGGCTGTTACTGACCCTCGA
ACTGGGAAAAGGATTGCTTTGAAAAAGATGCCAAATGTATTTCAGAATAT
TGTCTCAAGTAAAAGAGTTTATCGAGAACTAAGAATGTCATCAAACGTGA
ACCACCAAGACGTCAAGATTCCACCTACCAATATTTTATCCCACCACAGC
GGCCATATGGCTGTATGTAAAGCTCATGGCCCACCATATAATACATCTGC
AGCCTTGACACCTCAGTCAAACATCACAGATGATGATGGCCCAAGTTACA
AGAAATATCGCTCATGTACCTCAACCAAGGAACCTTCTACTCCAACTTCC
AGAGAACTCAAGACTCTTGAAGCTGACAGGCCCATTGGTTATGGTGCATT
TGGTGTTGTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028375XLOC_028375Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044763-proteinTCONS_00044763-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044763-exon-sc0006168-1575043694:2101..2376TCONS_00044763-exon-sc0006168-1575043694:2101..2376Clytia hemisphaericaexon
TCONS_00044763-exon-sc0006168-1575043694:1..107TCONS_00044763-exon-sc0006168-1575043694:1..107Clytia hemisphaericaexon
TCONS_00044763-exon-sc0006168-1510915933:2101..2376TCONS_00044763-exon-sc0006168-1510915933:2101..2376Clytia hemisphaericaexon
TCONS_00044763-exon-sc0006168-1510915933:1..107TCONS_00044763-exon-sc0006168-1510915933:1..107Clytia hemisphaericaexon
TCONS_00044763-exon-sc0006168-1491911889:2101..2376TCONS_00044763-exon-sc0006168-1491911889:2101..2376Clytia hemisphaericaexon
TCONS_00044763-exon-sc0006168-1491911889:1..107TCONS_00044763-exon-sc0006168-1491911889:1..107Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0006168supercontigsc0006168:1..2376 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
8.31711	12.4674	12.7424	11.6331	114.573	81.9531	50.3205	51.7255	23.7637	27.1979	35.1782	28.6578	48.357	31.8422	24.8923	25.5907	91.5548	76.0966	33.469	36.3256	39.9485	35.5073	15.9955	34.6964	29.0801	29.9811	126.584	97.9414	76.3434	101.726
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR017441Protein_kinase_ATP_BS
IPR000719Prot_kinase_dom
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0004672protein kinase activity
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
[Close]
BLAST of TCONS_00044763 vs. Swiss-Prot (Human)
Match: NLK (Serine/threonine-protein kinase NLK OS=Homo sapiens GN=NLK PE=1 SV=2)

HSP 1 Score: 98.9821 bits (245), Expect = 8.587e-25
Identity = 42/51 (82.35%), Postives = 48/51 (94.12%), Query Frame = 2 
Query:  230 LEADRPIGYGAFGVVWAVTDPRTGKRIALKKMPNVFQNIVSSKRVYRELRM 382
            +E DRPIGYGAFGVVW+VTDPR GKR+ALKKMPNVFQN+VS KRV+REL+M
Sbjct:  138 IEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKM 188
The following BLAST results are available for this feature:
BLAST of TCONS_00044763 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NLK8.587e-2582.35Serine/threonine-protein kinase NLK OS=Homo sapien... [more]
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