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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00044763 ID=TCONS_00044763|Name=TCONS_00044763|organism=Clytia hemisphaerica|type=transcript|length=383bp ATCATCAAACGTGAACCACCAAGACGTCAAGATTCCACCTACCAATATTT TATCCCACCACAGCGGCCATATGGCTGTATGTAAAGCTCATGGCCCACCA TATAATACATCTGCAGCCTTGACACCTCAGTCAAACATCACAGATGATGA TGGCCCAAGTTACAAGAAATATCGCTCATGTACCTCAACCAAGGAACCTT CTACTCCAACTTCCAGAGAACTCAAGACTCTTGAAGCTGACAGGCCCATT GGTTATGGTGCATTTGGTGTTGTCTGggCTGTTACTGACCCTCGAACTGG GAAAAGGATTGCTTTGAAAAAGATGCCAAATGTATTTCAGAATATTGTCT CAAGTAAAAGAGTTTATCGAGAACTAAGAATGT Run BLAST on NCBI protein sequence of TCONS_00044763-protein >TCONS_00044763-protein ID=TCONS_00044763-protein|Name=TCONS_00044763-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
SSNVNHQDVKIPPTNILSHHSGHMAVCKAHGPPYNTSAALTPQSNITDDD GPSYKKYRSCTSTKEPSTPTSRELKTLEADRPIGYGAFGVVWAVTDPRTG KRIALKKMPNVFQNIVSSKRVYRELRM Run BLAST on NCBI transcript from alignment at sc0006168:1..2376- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00044763 ID=TCONS_00044763|Name=TCONS_00044763|organism=Clytia hemisphaerica|type=transcript|length=2376bp|location=Sequence derived from alignment at sc0006168:1..2376- (Clytia hemisphaerica) ATCATCAAACGTGAACCACCAAGACGTCAAGATTCCACCTACCAATATTT
TATCCCACCACAGCGGCCATATGGCTGTATGTAAAGCTCATGGCCCACCA
TATAATACATCTGCAGCCTTGACACCTCAGTCAAACATCACAGATGATGA
TGGCCCAAGTTACAAGAAATATCGCTCATGTACCTCAACCAAGGAACCTT
CTACTCCAACTTCCAGAGAACTCAAGACTCTTGAAGCTGACAGGCCCATT
GGTTATGGTGCATTTGGTGTTGTCTGGTAAGTGAATTGCTATATGCTGTC
TAACTTTGTCATTGAAAGATTTTATTTATACAATGTATGGCTGCTTATTT
AAAATATATTTTTTCTTCCCCACCAATCAAATAACTTCAAACTGGGTTAT
TCAAAAAACAGGGCTGTAAAACAGCTATGGATGTCGGTCATGAGGAAAGA
ACCTCATAGAAAAGTTTCTTCGATCAATTACTTTGTATGGTTGAAACAGC
CCATTCTACATGAGTTGAAAAAGTAGTTTTTCAAGACCTTTCCTATTGTT
CAAGTTCACTCAGGCCTGTAAACTTCAAATTCAAAATTTCCAAGGCGAGA
GAAGAAAATGTATGTATTTCCAAGGCAATTGAATTAAAAAACGCGAAAAA
GAGTGGAATTTCCGATGCATTTTGCAAAAGTACATGAATTTTTATTGGAA
TTTCTGACCACCACTGGAAAAAAAAAAATATTTCTGAGGCTAGAAAAAAT
TAAAAAATGTAGTCCGATGGGGGGTAACAAAAATTTTCTGGAATGGCCCA
CTTTAAGACGAGGCCAATTTGATATGTTGTTTTACGGGCCAAGCTACCCA
AAAAAGAGCCAAAAAAGATGGAAGGTCGGTCAGCAAAAAAATAAAAATAA
AAGTAGAATTTTACCTATGAAATTTAAAACTACTGCATCTTGACAAAAAA
GGGAAATAGAAAATTAAAAGGCACAAAAAGGTCAAATTCATGGCTAAAAT
GAAAAATTTAACATAAAATACTTACTAAATTGTTACCTGTGTTACTTATT
CTCAAAACCTTGGAAAAACTATTGAAATTGACAAAAAAACAATTCACTCT
ATTAAGAATTAGTGAATACTGTAAGAAAACTGAAACAAGAAAAATAAAAA
GCAAGAAGGTACGGTAAATACTGTTACACCGGTCAATACAGCACCACCCA
CTTAATGAGTGGTCCTTGTTGGTTGCTGGTATTTGATTTTGGAGTCTTTA
TTAGCAATGAAAATACTGAAGAAATTTTGGCTGGTGCAATTTGGTGTAAT
TTATTTTGGCAATTTAATAAAATTTCTAAATTTGGCAAGAATTAATTTTG
AGACCCATTTTTGCTTAATATTTTAGAGGGAAAAAAAGGTTTTTTCGGGG
AAATAGAGACTAAATTGAAAGAAAATTAGATTTTCTGAAATTTTAATTTG
ACGGAAAGAAATTTCTTCCCTTAAGTTAAAGATGTACTACCAAAATGATT
TTTATTTTTATTTTTGGAATTTCAAAACAACTAATCAAATTGGTCCATCC
TAATTAACTATAATTCTATCTATTTTTTTCACCATTTTTCCACAAGGGAA
AGACAAGCCATAGCTGTCACTCTCCCCAGCATGTGAGACTCCAACGCACA
CAACATTAAATTCTCCTATTGTCTGTTCAGTCTATTGAGCCAAACTTTGG
TTAGGAAAGGTGGCTTTGAGCTTATAACTTTTTTCAGGGTTTTTAATATC
AAAATTGGAAAAAATTCTGTTTAATAAAGTTTAACATATTCACAAAAGCT
AGTTGCGACACTGTTACTTTAAAGAATAGCTCAAAAACCAAATTTCCCTT
GAGTTTGAATAAAAAACAGGAATTGGGCTCATTTACAGGACAGTGGAAGG
CAACATACAAAATGAATCATTTGAACCTTATGCAAATAGGGAAAAGTGTA
TTCAATTTGATTTAGAACAGCATGTATAGAGTGCAATTGAATTGTTCCTG
ACCTTGGCGTTTTTTTGCAAGAAAATCCTGTAAATGGGACAATTTCATGT
TTGAATTTAAATGTTTTTTGAACTCAAGAAAAAGTAGGTTTCAAAATTGA
AAATCAGATTGGCCAAAAACCTTGGCTTCAATTTTTGAATTGGCATACAT
TTTTTTAAGAAGAAGAATCCTTGGCATTTTCTGAACAATTTTATAATGGC
CCTTAGTGGTTTTGATTTTAACGTTATTTTTATATCTCTTATTATAATTT
TTCATTTTTGTTATTTTAGGGCTGTTACTGACCCTCGAACTGGGAAAAGG
ATTGCTTTGAAAAAGATGCCAAATGTATTTCAGAATATTGTCTCAAGTAA
AAGAGTTTATCGAGAACTAAGAATGT Coding sequence (CDS) from alignment at sc0006168:1..2376- >TCONS_00044763 ID=TCONS_00044763|Name=TCONS_00044763|organism=Clytia hemisphaerica|type=CDS|length=762bp|location=Sequence derived from alignment at sc0006168:1..2376- (Clytia hemisphaerica) GGCTGTTACTGACCCTCGAACTGGGAAAAGGATTGCTTTGAAAAAGATGC CAAATGTATTTCAGAATATTGTCTCAAGTAAAAGAGTTTATCGAGAACTA AGAATGTCATCAAACGTGAACCACCAAGACGTCAAGATTCCACCTACCAA TATTTTATCCCACCACAGCGGCCATATGGCTGTATGTAAAGCTCATGGCC CACCATATAATACATCTGCAGCCTTGACACCTCAGTCAAACATCACAGAT GATGATGGCCCAAGTTACAAGAAATATCGCTCATGTACCTCAACCAAGGA ACCTTCTACTCCAACTTCCAGAGAACTCAAGACTCTTGAAGCTGACAGGC CCATTGGTTATGGTGCATTTGGTGTTGTCTGGGCTGTTACTGACCCTCGA ACTGGGAAAAGGATTGCTTTGAAAAAGATGCCAAATGTATTTCAGAATAT TGTCTCAAGTAAAAGAGTTTATCGAGAACTAAGAATGTCATCAAACGTGA ACCACCAAGACGTCAAGATTCCACCTACCAATATTTTATCCCACCACAGC GGCCATATGGCTGTATGTAAAGCTCATGGCCCACCATATAATACATCTGC AGCCTTGACACCTCAGTCAAACATCACAGATGATGATGGCCCAAGTTACA AGAAATATCGCTCATGTACCTCAACCAAGGAACCTTCTACTCCAACTTCC AGAGAACTCAAGACTCTTGAAGCTGACAGGCCCATTGGTTATGGTGCATT TGGTGTTGTCTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00044763-exon-sc0006168-1575043694:2101..2376 | TCONS_00044763-exon-sc0006168-1575043694:2101..2376 | Clytia hemisphaerica | exon |
TCONS_00044763-exon-sc0006168-1575043694:1..107 | TCONS_00044763-exon-sc0006168-1575043694:1..107 | Clytia hemisphaerica | exon |
TCONS_00044763-exon-sc0006168-1510915933:2101..2376 | TCONS_00044763-exon-sc0006168-1510915933:2101..2376 | Clytia hemisphaerica | exon |
TCONS_00044763-exon-sc0006168-1510915933:1..107 | TCONS_00044763-exon-sc0006168-1510915933:1..107 | Clytia hemisphaerica | exon |
TCONS_00044763-exon-sc0006168-1491911889:2101..2376 | TCONS_00044763-exon-sc0006168-1491911889:2101..2376 | Clytia hemisphaerica | exon |
TCONS_00044763-exon-sc0006168-1491911889:1..107 | TCONS_00044763-exon-sc0006168-1491911889:1..107 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0006168 | supercontig | sc0006168:1..2376 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
Term | Definition |
GO:0005524 | ATP binding |
GO:0004672 | protein kinase activity |
Vocabulary: Biological Process
Term | Definition |
GO:0006468 | protein phosphorylation |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category |
Term Accession |
Term Name |
biological_process |
GO:0006468 |
protein phosphorylation |
molecular_function |
GO:0005524 |
ATP binding |
molecular_function |
GO:0004672 |
protein kinase activity |
Blast
BLAST of TCONS_00044763 vs. Swiss-Prot (Human)
Match: NLK (Serine/threonine-protein kinase NLK OS=Homo sapiens GN=NLK PE=1 SV=2) HSP 1 Score: 98.9821 bits (245), Expect = 8.587e-25 Identity = 42/51 (82.35%), Postives = 48/51 (94.12%), Query Frame = 2
Query: 230 LEADRPIGYGAFGVVWAVTDPRTGKRIALKKMPNVFQNIVSSKRVYRELRM 382
+E DRPIGYGAFGVVW+VTDPR GKR+ALKKMPNVFQN+VS KRV+REL+M
Sbjct: 138 IEPDRPIGYGAFGVVWSVTDPRDGKRVALKKMPNVFQNLVSCKRVFRELKM 188
The following BLAST results are available for this feature:
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