TCONS_00044515 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044515
Unique NameTCONS_00044515
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length419

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044515 ID=TCONS_00044515|Name=TCONS_00044515|organism=Clytia hemisphaerica|type=transcript|length=419bp
ATTTTTAGAGAGAAATTTGTCATGTTTGACATACTAAAATATTCTTTATA
AATCGAGATATAGTTACCTGAGTTTACAACAAGTTTTTCTNAATATTATT
TATAAATCGAGATTAGTTACCTGAGTTTACAACAAGTTTTTCAGTTCTCT
CGACGAGGTCTGGGATCCATTTTTGAGCTTCTCCAACAAAGACTGCAGTT
GACAAAGCCATACAACGTTGGCCGGCAGCTCCGAAAGCAGCACCAACAAG
TTGATTCAATGAAGATTCTTTATTAGCGTCTGATAATACAACACCGTGGT
TTTTGGCTCCCTAATATGAAATTGGTTGCATATACAGTGTTCCCTTCAAC
TAGTATCTCCATAACATGCTTGATATTTACAGTCTCACACTACTATACAA
GTATCTCCATAACATGCTC
Run BLAST on NCBI

transcript from alignment at sc0005703:24..442

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044515 ID=TCONS_00044515|Name=TCONS_00044515|organism=Clytia hemisphaerica|type=transcript|length=419bp|location=Sequence derived from alignment at sc0005703:24..442 (Clytia hemisphaerica)
GAGCATGTTATGGAGATACTTGTATAGTAGTGTGAGACTGTAAATATCAA GCATGTTATGGAGATACTAGTTGAAGGGAACACTGTATATGCAACCAATT TCATATTAGGGAGCCAAAAACCACGGTGTTGTATTATCAGACGCTAATAA AGAATCTTCATTGAATCAACTTGTTGGTGCTGCTTTCGGAGCTGCCGGCC AACGTTGTATGGCTTTGTCAACTGCAGTCTTTGTTGGAGAAGCTCAAAAA TGGATCCCAGACCTCGTCGAGAGAACTGAAAAACTTGTTGTAAACTCAGG TAACTAATCTCGATTTATAAATAATATTNAGAAAAACTTGTTGTAAACTC AGGTAACTATATCTCGATTTATAAAGAATATTTTAGTATGTCAAACATGA CAAATTTCTCTCTAAAAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028138XLOC_028138Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044515-exon-sc0005703-1491911889:24..442TCONS_00044515-exon-sc0005703-1491911889:24..442Clytia hemisphaericaexon
TCONS_00044515-exon-sc0005703-1510915933:24..442TCONS_00044515-exon-sc0005703-1510915933:24..442Clytia hemisphaericaexon
TCONS_00044515-exon-sc0005703-1575043694:24..442TCONS_00044515-exon-sc0005703-1575043694:24..442Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005703supercontigsc0005703:24..442 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
756.929 760.116 975.008 969.163 407.955 319.637 224.635 225.178 219.709 259.274 176.457 274.111 127.66 137.551 116 127.522 179.062 186.742 96.08 85.4302 186.915 202.808 288.185 273.351 118.158 118.587 291.243 253.059 75.1545 85.02
Blast
BLAST of TCONS_00044515 vs. Swiss-Prot (Human)
Match: MMSA (Methylmalonate-semialdehyde dehydrogenase [acylating], mitochondrial OS=Homo sapiens GN=ALDH6A1 PE=1 SV=2)

HSP 1 Score: 108.227 bits (269), Expect = 5.928e-28
Identity = 50/65 (76.92%), Postives = 59/65 (90.77%), Query Frame = -2
Query:  116 GAKNHGVVLSDANKESSLNQLVGAAFGAAGQRCMALSTAVFVGEAQKWIPDLVERTEKLVVNSGN 310
            GAKNHGVV+ DANKE++LNQLVGAAFGAAGQRCMALSTAV VGEA+KW+P+LVE  + L VN+G+
Sbjct:  285 GAKNHGVVMPDANKENTLNQLVGAAFGAAGQRCMALSTAVLVGEAKKWLPELVEHAKNLRVNAGD 349          
The following BLAST results are available for this feature:
BLAST of TCONS_00044515 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MMSA5.928e-2876.92Methylmalonate-semialdehyde dehydrogenase [acylati... [more]
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