TCONS_00044504 (transcript) - C. hemisphaerica

Overview
NameTCONS_00044504
Unique NameTCONS_00044504
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1791

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00044504 ID=TCONS_00044504|Name=TCONS_00044504|organism=Clytia hemisphaerica|type=transcript|length=1791bp
NNCGTTACGGGCGTGGAAGGTGGTTTCTGGGCGTAGTACAGAGGCTATAG
AATCGCCTCTGTACACCCCTCCCCGCCCTGTTAAACAGGTTGGGAGCGGT
TTCCCCTACTACAATTCAAATAAATATCTGGGATGACCAGGGCGTTTCCG
ACTGAACCAGTACAATAGCAAATCCTATATAATAATCCTAAAAATACtat
gaaaataaacattaaataaTCTGAACTCTAATGATAAATACTATTCCTAT
AATCAACAAAATATAAGGTTAACTgtttaaataataattttttcaagaac
ataTTTATCTTATGACCTAAGTAATATGAGGTATAATAAGGGAGGAGGGT
GGACATTTCCCAATCAACATAACATGAACCATATCATTTCTACTCTACGG
GGTCTAAATGACCCCAGAATAGTGTCTCTCTTTGTGCCAAGGCTAGGATA
GAAATTGTCTGTTGTCTATGGTGATGGTTGATTGGAAGGGAGGGTGGAAA
CCATGGTAGCAACTGCTGTTTTCTCGTGGGAAAGTTcttcgtttttgttt
tcaaaatagttCATTTTGTTGTGTTGTTCGGTATTATTTTTGAATGTTGC
TTGGCGGTATCTGATTGGTAGGTTCTTTTCAACCAATCGTGGTGACTGCA
CAATGACTGTCCCGCGGGAAAGTTATTCATTGTTACTGAAAAACATATCA
TTGTTGTTGTGTTGTTCGGCATTACTTGTAATGGGTACTTGGTGGTATTT
GATTGGTAGATTCCTTTCAACCAATCGTTGTGGTTGTACGGAGAGTATAG
TTTCTTTTTAGcagtaatattttttcattgtttcttgGATACCCGTGAAG
ATGGATCGACGTTTTACACTACTTTTAATACCAATTAACGGGCGTTGGAA
CGTCGTGTGGTCANCCTTGGTTCCAGTGAACGGGCGTTGGAACGCCGTGT
GGCAATGCGTCAATTGTCACTCTACAAACATCGCAATGTGCCCCGGGTGT
TTGCATCCAAAGCACTTCGAGGATAAAAATGGATCAGTCTTGGCCACCAG
GTGTTGTGGCCGAGTTTGGCGCGGCTCCGAAGATATCGTCTGCTGCTATT
GTCTTCCGgcacACCAATTTTTAAATCGATGACGAGTTTCACACTTGGAA
TTTTCACCTCAAGGTAACCGACGAAACGAAGGCAACGACTAATGTCCATT
TTCGTTGGAGTGTGGTGCAGTCATATAAATCACCTAATTCTCTGGGCCCC
AACCTCGTTGCAGACCCCAACGTGAACAGCATTATAAAAATTAAGACCGT
GATGATAGAGTTAGAAATTGAGAAGTTAGAATGGTTCTCGTTCTCTGGTT
CCTTAACGACGATCATGTTCAGGCTTTCTTTTCGAGTTCTTTTATTTTCT
CCTTCTTTCTTTTCCTTAGCTTNNNNNNNNNNNNNNTTTTGTTTTGTTCT
GCGATTGAAGTCTACAATGAGGTTTGGGTCTAAAATATTTTCACTAGGCT
CCCAAGTAGCCTGCGACAAGGGATATCCTTGCCACTTCACAAGATAACTC
GTGATTCCAGATCGTTTTCTGGATTTCAGAATTCTTTCTACCCTATAAAC
CAGGTCTTCCTGTTCGATTTCCATTGTCGGATCGGGGACGTGTGGCATAG
AATCTAACGGGATGCAATCTAACGGGACGTTACAAAATTCGTCCTCTCCC
TCGACCTCATTGTCCGGTCTTTCCCTGGGGGTGTACTTCTTTATTCTGGA
GGCATGGACATTTACTGGGACTCTCCTCCCCTCTATCTCGA
Run BLAST on NCBI

transcript from alignment at sc0005693:6098..12092+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00044504 ID=TCONS_00044504|Name=TCONS_00044504|organism=Clytia hemisphaerica|type=transcript|length=5995bp|location=Sequence derived from alignment at sc0005693:6098..12092+ (Clytia hemisphaerica)
NNCGTTACGGGCGTGGAAGGTGGTTTCTGGGCGTAGTACAGAGGCTATAG
AATCGCCTCTGTACACCCCTCCCCGCCCTGTTAAACAGGTTGGGAGCGGT
TTCCCCTACTACAATTCAAATAAATATCTGGGATGACCAGGGCGTTTCCG
ACTGAACCAGTACAATAGCAAATCCTATATAATAATCCTAAAAATACtat
gaaaataaacattaaataaTCTGAACTCTAATGATAAATACTATTCCTAT
AATCAACAAAATATAAGGTTAACTgtttaaataataattttttcaagaac
ataTTTATCTTATGACCTAAGTAATATGAGGTATAATAAGGGAGGAGGGT
GGACATTTCCCAATCAACATAACATGAACCATATCATTTCTACTCTACGG
GGTCTAAATGACCCCAGAATAGTGTCTCTCTTTGTGCCAAGGCTAGGATA
GAAATTGTCTGTTGTCTATGGTGATGGTTGATTGGAAGGGAGGGTGGAAA
CCATGGTAGCAACTGCTGTTTTCTCGTGGGAAAGTTcttcgtttttgttt
tcaaaatagttCATTTTGTTGTGTTGTTCGGTATTATTTTTGAATGTTGC
TTGGCGGTATCTGATTGGTAGGTTCTTTTCAACCAATCGTGGTGACTGCA
CAATGACTGTCCCGCGGGAAAGTTATTCATTGTTACTGAAAAACATATCA
TTGTTGTTGTGTTGTTCGGCATTACTTGTAATGGGTACTTGGTGGTATTT
GATTGGTAGATTCCTTTCAACCAATCGTTGTGGTTGTACGGAGAGTATAG
TTTCTTTTTAGcagtaatattttttcattgtttcttgGATACCCGTGAAG
ATGGATCGACGTTTTACACTACTTTTAATACCAATTAACGGGCGTTGGAA
CGTCGTGTGGTCANCCTTGGTTCCAGTGAACGGGCGTTGGAACGCCGTGT
GGCAATGCGTCAATTGTCACTCTACAAACATCGCAATGTGCCCCGGGTGT
TTGCATCCAAAGCACTTCGAGGATAAAAATGGATCAGTCTTGGCCACCAG
GTGTTGTGGCCGAGTTTGGCGCGGCTCCGAAGATATCGTCTGCTGCTATT
GTCTTCCGGTAAGTGGTTTCTTTTCCTCTCTCTTCTTTCAGGGGTTTCGT
CCATCGTCGGTCCTTCTGGGTTGGTTTAAGGTTTAGTCTTCGTTTTGGTA
TTTCTGTTTCCCAGCCTGGCATCCAACTCCATTTCCACACTATTTCAATT
ACTTTCACGGCCCTCCTCCTTTTTACCTATATCAATAGACTTCCCTCCCC
CCTCTAGGTGAGATCTAGTCGAGGCTGATAGAAAAAGTACGTGTCTCATA
GCTATCGCTCGTCTGTGAATTCCCAGTCAGGCTTTATTCTATTTATGTAG
AACCTATctcattattttattatttttttttttttcaggcacACCAATTT
TTAAATCGATGACGAGTTTCACACTTGGAATTTTCACCTCAAGGTAAGAT
TTTCGATGTTTTGGAGGCACACAAAACTTCCCACAAAATAGGTCTCTCTC
CGTTACTGTCTACGTgtataaaataattcaaaatgccgttatatcaaaaa
aaaatctattaccTAGTGCCTGTGTTCCTGTCCCGATTATACCCTCGTTT
CCTATTAGACGCGtaggaaaaaaatcgaattttttagtctcaaaaatatt
tctagcaCTAGTGCAAAATTTCTCAATTCCAATAAAAAATTCTCTTTGGG
ATAAGAACACACGGCGTGTGAAGTCTGAGGGTGCGTGTCCGTATTACGAC
TCTCTAacgcaaaattaaaaaactcaaaaaaattcaaattggaTTAAAGA
AATAGCTATACTTACACCTCTGTGTCCCTTCTGTAGGTCTACCTTTGAGC
TTCGAAAACTGCAAGTAATTGTGATTATTAATACATTTATAGGCAATGAT
TTTTCTGTATTTActaatgttgttttttattttattttattgttcaGGTA
ACCGATGAAACGAAGGCAACGACTAACGTCCATTTCGTTGGAGTGTGGTG
CAGTCATATAAATAACCTAATTCTCTGGGCCCCAACCTCGCTGCAGACCC
CAACGTGAACAGCATTATAAAAACTAAGACCGTGATGATAGAGTTAGAAA
TTGAGANACACCTTTTTAagcgtagtcgcgcggtcaggcgcgtacAAATT
TATTATTTGATTTACCCCCTTagactcgatccaatccttttttacacttt
ttggacctaccccggtggaggtcctataaattaaccgttgtatgttcgtt
cgtccgttcgtccgttcgttctttagttactagcttttctcgatattggc
tcattagttttttctaattttttgcacaaagatgcataactataaaccct
cgaatgtgacggagcccgattttcgaaaaaaaaaatttttgggtaaattt
aggccaaaaaacggctaaaaacgtttttggacttggtgtgaaaaattgga
tcattaattttttctgattttttgcatgaaagtaggataccatcataggt
aaaagatggctcaagcatatttttgcaaaaaaattttggtggctcaaaaa
cgcatgtttatctataagaatcactattaataagcatacatcaatgttct
tagtcaaattacccaaatttttttatgagatagatgttttttttgctcac
aagggctgacttttaaagaatatgtgtgtttagacatgaaattttggttg
cttggcgggtttttatagaaaaactggccaaattcgatattttttataag
tacattatcaattacttaggtataaacttttctcgagattagctctttca
ttctttatgattttttgcacaaagatgcataactataaaccctcgaatgt
gacggagctcgacttttggagaaaaaaatttggggtaaatttcagctaaa
aaacggctaaaaaaagggactttgtgaaatattggatcattgtttttttc
tgactttttgtatgaaagtaggtaaaagatggctcaagcagatttttgta
aaaaaaataatttttcagctcaaaaaacgcatctttatctataagaatca
ctattaataagcatacatcaatgcaCTTAAAATTAccgaatttttttatg
agatatgtttttttgctcacgaagtcttgaatatgaaagaatatgtAATA
ATGCGATGCCGGCCCACGTCTAGGTCGACACCACACTATTAACGGGTGGA
GGACTAGTCCAGACATCAAACAGAGAAGGGGAGACTGTACGTATTTCTGT
ACTGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGTAAGTGGTTTCTTTTCCT
CTCTCTTCTTTCAGGGGTTTCGTCCATCGTCGGTCCTTCTGGGTTGGTTT
AAGGTTTAGTCTTCGTTTTGGTATTTCTGTTTCCCAGCCTGGCATCCAAC
TCCATTTCCACACTATTTCAATTACTTTCACGGCCCTCCTCCTTTTTACC
TATATCAATAGACTTCCCTCCCCCCTCTAGGTGGGATCTAGTCGAGGCTG
ATAGAAAAAGTACGTGTCTCATAGCTATCGCATGTCTATGAATTCCCAGT
CAGGCCCTATTCTATTTCTGTAGAACCTAtctcattattattattttttt
tctttttcaggcgCACCAATTTTTAAATCGGTGATGAGTGTCACAACTGG
AATTTTCACTTCAAGGTAAGATTTTCGATGTTTTGGAGGCACACAAAAAC
TTCCCACAAAATAGGTCTCTCTCAGTTACTGCCTACgtatataaaataat
tcaaaatgccgttatataaaaaaatctattaCCTAGTGCCTGTGTTCCTG
TCCCGATTATACCCTCGTTTCCTATTAGACGCGTAGGAAAAAAATCGAAT
TTCTAagtctcaaaaatatttctagcaCTAGTGCAAAATTTCTCAATTCC
AATAAAAATTTCTCTTTGGGATAAGAACACACGGCGTGTGAAGGATGAGG
GTACGTGTCCGTATTACGACTATCTAacgcaaaattaaaaaactcaaaaa
aaaatttttcaaattagatTAAAGAAATAACTATACTTACACCACTGTGT
CCCTTCTGTAGGTCTACCTTTGTGCTTCAAAAACCGCAAGTAATCGTAAT
TGTTATTATATTTATAGGCAATGACTGCTCTGTATTTACTTATGTTGCTT
TTCCTTTCATTGTTCAGGTAACCGACGAAACGAAGGCAACGACTAATGTC
CATTTTCGTTGGAGTGTGGTGCAGTCATATAAATCACCTAATTCTCTGGG
CCCCAACCTCGTTGCAGACCCCAACGTGAACAGCATTATAAAAATTAAGA
CCGTGATGATAGAGTTAGAAATTGAGAAGTTAGAATGGTTCTCGTTCTCT
GGTTCCTTAACGACGATCATGTTCAGGCTTTCTTTTCGAGTTCTTTTATT
TTCTCCTTCTTTCTTTTCCTTAGCTTNNNNNNNNNNNNNNTTTTGTTTTG
TTCTGCGATTGAAGTCTACAATGAGGTTTGGGTCTAAAATATTTTCACTA
GGCTCCCAAGTAGCCTGCGACAAGGGATATCCTTGCCACTTCACAAGATA
ACTCGTGATTCCAGATCGTTTTCTGGATTTCAGAATTCTTTCTACCCTAT
AAACCAGGTCTTCCTGTTCGATTTCCATTGTCGGATCGGGGACGTGTGGC
ATAGAATCTAACGGGATGCAATCTAACGGGACGTTACAAAATTCGTCCTC
TCCCTCGACCTCATTGTCCGGTCTTTCCCTGGGGGTGTACTTCTTTATTC
TGGAGGCATGGACATTTACTGGGACTCTCCTCCCCTCTATCTCGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_028132XLOC_028132Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00044504-exon-sc0005693-1491911889:6098..7205TCONS_00044504-exon-sc0005693-1491911889:6098..7205Clytia hemisphaericaexon
TCONS_00044504-exon-sc0005693-1510915933:6098..7205TCONS_00044504-exon-sc0005693-1510915933:6098..7205Clytia hemisphaericaexon
TCONS_00044504-exon-sc0005693-1575043694:6098..7205TCONS_00044504-exon-sc0005693-1575043694:6098..7205Clytia hemisphaericaexon
TCONS_00044504-exon-sc0005693-1491911889:7536..7590TCONS_00044504-exon-sc0005693-1491911889:7536..7590Clytia hemisphaericaexon
TCONS_00044504-exon-sc0005693-1510915933:7536..7590TCONS_00044504-exon-sc0005693-1510915933:7536..7590Clytia hemisphaericaexon
TCONS_00044504-exon-sc0005693-1575043694:7536..7590TCONS_00044504-exon-sc0005693-1575043694:7536..7590Clytia hemisphaericaexon
TCONS_00044504-exon-sc0005693-1491911889:11465..12092TCONS_00044504-exon-sc0005693-1491911889:11465..12092Clytia hemisphaericaexon
TCONS_00044504-exon-sc0005693-1510915933:11465..12092TCONS_00044504-exon-sc0005693-1510915933:11465..12092Clytia hemisphaericaexon
TCONS_00044504-exon-sc0005693-1575043694:11465..12092TCONS_00044504-exon-sc0005693-1575043694:11465..12092Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0005693supercontigsc0005693:6098..12092 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.209273	0.0383978	0	2.59644	0.985461	6.04343	2.43093	0.49626	0.822673	1.93302	1.59884	0.457024	0	0.685077	2.19905	0	1.74645	0	0.896719	0.249424	0	0.536041	0.369798	0.0663536	0.0482075	0.291098	0.321261	0.367021	0.28047
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000953Chromo/chromo_shadow_dom
IPR023780Chromo_domain
IPR023779Chromodomain_CS
IPR016197Chromodomain-like
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00044504 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top