TCONS_00043228 (transcript) - C. hemisphaerica

Overview
NameTCONS_00043228
Unique NameTCONS_00043228
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length591

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00043228 ID=TCONS_00043228|Name=TCONS_00043228|organism=Clytia hemisphaerica|type=transcript|length=591bp
CCACAATGCATCGGGAAAATTTCTCTCATACTTTCGAAGCGGGAGACCGA
AAAACTGAAAACGTGATTTGCATGAAAACAAGAAAATGGCCGAGTTGGAA
GAGGCAGTTGGTTTTGCTTTTACTTCTGGAATTTGCTTTGTTTAGAAAAG
AATGCTGAGTAGGATGTCTGGACCTCGACAAAGATGATTTCCATCGGCAG
CACCGGCTCTGTGGTCTTCTTGTGTTGGTCACCACACCACTGGTAAATGT
TTCATCAATTTGGTTATTTATTGGCGAATTTTCTTTGAAGAAATCCTATT
GCGATAAATAATATGAATCATATTAATGTGAAGatcaaatttcaaagaat
ttgCTGGACATGCATATACTACAGTGATGACCCGTGAAAGAATCCAGGac
GAAAGGCATCATAACCAAGAAGAAAACGAGCTGCCGAACGAGCTGCTAAT
TTTTTTATGCATAAAGCTTTTTATTTTAAGGacaattttttattatattt
ccaATAAATCATAAAAGTATGGGATCTTTTTTTCATTGTCTCGTAAAAGT
TTGAATATTAGAAGGATGAGAATAGTAAAACTCAAAATCCA
Run BLAST on NCBI

transcript from alignment at sc0004034:1361..7781+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00043228 ID=TCONS_00043228|Name=TCONS_00043228|organism=Clytia hemisphaerica|type=transcript|length=6421bp|location=Sequence derived from alignment at sc0004034:1361..7781+ (Clytia hemisphaerica)
CCACAATGCATCGGGAAAATTTCTCTCATACTTTCGAAGCGGGAGACCGA
AAAACTGAAAACGTGATTTGCATGAAAACAAGAAAATGGCCGAGTTGGAA
GAGGCAGTTGGTTTTGCTTTTACTTCTGGAATTTGCTTTGTTTAGAAAAG
AATGCTGAGTAGGATGTCTGTAAGTATAAATAGAGTctccaaattaaatt
tcaagaaatttgatCTTCCCAACCATATCCAAAGATTTCCAAACCATAGA
TGGTTTTTTGATGACATCACTTGATTATATTTTGTTCCAAGTTGCCTgta
aacaaatgatttcatCAAGAATACATCTATATCAAAGGCCAAAGCTGTAC
AAGCAATATATACCTGAGTTTTCAGTGGGCAAGTCTATTTTTGTCAATGG
ACTAGACTTCACCCTATAAAGCCCTTGCTTGGAAAAGTTGGCTAGCCATA
AGTCTTAttaggcagttagtcacactaggaaatcaagctttcaaaaaaaa
caatatcagtcatctacaggatgtattagAAACAataaggatgagagtta
cctgNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNgcacatgtaaatgggtcagtgtttgag
gtccggcaaaatttccgggaaaaagCCTATCCGACAGTCCGCGGATCTAG
ATGGGTCCGGTCTCCcttgtagatctttttcttgggaattttttcttcaa
attagttttcaatgTTGGCTTGGCGCAAACTTTTTCATTTATGGCTCaaa
atttaggtaatttttcacagtttttgaaaatatttgtttcgtTAAAAAGC
GCTGGGTTATTTATTCACAAATGCCTTCAGGAGTTTTGCAGCGCATCTTT
TTGCTTGCGAGtgaagtaaacgatatagcactttcgcagcattaatcttt
gatatggaTTTCCGCGGgaagctagtgtgactaactgttagcGGCCAACG
TCTATATTCAAATCGACTGATCGAACTATCATGATACgggtttcaatgtt
ttgattttgcccagacccgatcaatcaaactaatcgaactgatTTTCTAA
TCGAACTTGATCAAACCTCATCGAACGATTAGAGTTCGAtcaatcgaact
gatcgaacctaATGGAACACTCACAACTTTTGATAAAACttgagttcgat
tagttcgattaggcaaaaaagttcgattagtccCGGATATTTAGTCCGCA
CGAATGCCCTCCCTTGCCGCGCGAACAAACTTTTTAAACCCGCGCGGTAA
ATATTGACGCCTGGTGGATGCGCCCGATCCGATAGCGTTACTGGCGCGAA
TTTACCACAGGTTTCGGAAAAGGATATCGGGAATAGTTTTCCCAATTTTG
AATTCTGACTTTAAATATGAATGTTGAATGGTACGAACTAGTCGAACAAG
TTAGGTTGTCAAACTAATCGAACCGTAATTAGTGATCGAACTTAAGGCAG
CAATCGcaaatatcttcgttttgcGTCGCCCAACGGACTcttgaaaattg
agtagaattgagtcggtgagtcagTAAATTTCTCGGACTTTTTTGTCGTT
GACGGTttcttcgttcaaaaattttattattgccgattttttgcaAGCGA
TTTCTAGTGTAGCGCATTCgcggcattttgactttgtttatcattacatt
ttGGGTCAAAGGTCACAGTCTTCAAAGgttataatttgaaaccacccata
aaacacgcggttgttttggctgctggatGGCTAGCTGTTTCTTTCGAGAA
TCACAGACCAATTTTGagaaaacccgaaaatttttatgaCCGACTGACTC
Accttttagacccaacgaggacgcgaaaatgaagatatttgtgattgtca
CCTAATCGAACAATCTGGaagctcgattagtttgattgatCAAACTCTAA
TCGTTCGAtcaagttcgattagttcgattaaaaTATCCGTacgattagtt
cgattgatcgggtctggttttGCACGGGCGTGCAATCACGCTGGATTACT
GGAGGCAAAAAGACTTAATTTGTTTTTATGAAGGCGAGTGAACATCGATC
AAATTTTCGATAAGTACTTGTTTTTGTATCTCTTCGAAATTTATGAATGG
TAAGCCTATGTACCTCTTAGAAAAGAGACTTAAAGCTCTTTTCAAAAGTC
CTACCAGAGACTTCCTCACAGCAAAAAATTTGCTTGCCTCCAGCTAATGG
TATGGTCTTTTTGCCTCCAGAAAATCAGGCTGCAAGTCACGGCGTGAGTA
AACAAATGACTTATCACAAAAGCCGTCTATTTTTCTTGGGTATATATACC
AGGGGATGTCGATCGGTTATGATCAAATTTGATCGACTTAGCTTCGATTT
ATTTACGATTGGTATTGCTGTTTACGCGACCAACNAAGTGATTAGTCGAA
TCAAACGAAGTCGATCAAAGTGATTGTCGAatcaatcaaagtcaatcaaa
acttcaaaaaaatgtaaatctcCGATTGATTTCGATCGGTTATGATCAAA
TTTGATCGACTTAGCTTCGATTTATTTACGATTGGTATTGCTGTTTACGC
GACCAACTCACTTCAAACTGATTTTTTAATCGAATTAATCAAACTtgatc
gaacctaatcgaacgatTATATTTCGATTAGTCAAACTAATCGAGCTTcc
agattttttccaaaattgtgagtgttcgattaagttcgatcactAATTAC
GGTTCGACTAGTTCGACAACCTGATTTGTTCGATTAGTTCGTACCATTCA
TCATTCATATTCAAAGTCTGACCTCAAAGTGAAAATTGGAATTCAAAATC
GGGAAAACTATTCCCGATATCACTTTCCCAAAACACTCCTGGTAAATTCA
TGCCAGCAACGCTATCAGATCGGGTGCATCTGCCGGGCGTCAATAATTAC
CGTGCATGTTTAAAAAGTTTGTTCACGTGGCATGGACGCTGGCATTCATG
CGGACTAAATATGGCGGTAATCTAATATATGTTCCGTtggcgtcgcccga
ccgactcaccttcaaaacataaatcccGAGTCAGACGAGTCGGAAAAATG
TTGGAAATTTCTAAGTCGAAATACGACGAcgcggtagggccaatacccCC
GTGAGCCAAAAATAAGGTCCACTTTTTAAGGCTAACACATGCGCGCGCGC
ATTTAGTTTGgtaaatcaaagatggcggcaagagATTTTGGAtttactag
atttaaaaaacccgacaaaatttactaGCGACTGGAATTGAAGATATTTT
atgacgcgaacggaacatattttagattgcCGCCTATCCGGGTGAGCTAC
ATATCTGGGTGCGCGAACCAAATATCCGGGAGGGGCAACTTTACACggtc
aaaaataagaaattatgttttctttcgactttgttttgtttttgcccgAG
TGACTCGGTGACTCGTGAGACCGGGGTCCATAAAGGAGAAATTGATAACA
ACATTCAAAACAATCAACAACAACCCCAACAACCTGCTCCCCCTGCTGGC
GCTGCTGTTGACCCTGATTCCCTGATGGGTGGAATATATCAAATTGGAAG
GAAGGTGATAAGGATCTGACATGGCTTGGTGATTTTGCCGGAGAAGAAGG
CTTTTTAATTGACATGCCAGAGAATGTAACTGAGCTGGATTTAACGGATG
ATGTGCTTCAATCAATCACCACTGAGACCAATAGATATGCCAGAACCTAA
CTGGACAAAGCCGATGAACATAATAGATTGAAACCTAATTCCAGATTCAG
ACAATGATCAGAAAATGGtcgctgactctttttaaaaagcgttgatgaca
tctttgagttgtgttttcaacgacgcaaaaaaaaaatcaactttgaatTT
AATCCAAGATCTTAGATTGTTGTCATGGTTACtgttctctgcgttgattg
cgcgctcaGTATaatctcgattggtcggcacagttttgaaaaaactttcg
taTAAGCATATGATAAGCATAATGTGAGGCTAAAAAAAAGTTTGCTAAGC
TTAATGAGCCTCAGCCAAAATTTCTCGTATGCGTATAAGTACTTTAAgga
cagaaactttcgcaagcagaaactttcgcctttggtaagaaattaaacct
gaaaaacgcgaattaacttttcataaaaaagggttgctgatacaggggtg
ttttcATAGGGCAATTTCCCAATGGATTGAAActttaatgtatttttttc
cAACAGGGACCTCGACAAAGATGATTTCCATCGGCAGCACCGGCTCTGTG
GTCTTCTTGGTAATATCATCTGTTCTTCATGATGAGTTGAATGTGGTGTG
TTTTATGCATAAACCTCAGCATTGCTTTCCCAGTGTCGTTTGAGTGTCAT
GGTAaacgccatggcttggcagtTCACGTATGTAAAGTCACAGTctctgt
cagcgccgtgattcctactcctttgggactaggacccattccgatacATT
CTGAAGTTCGGGGAAAATGTAGTACATAGCGTGGTTAGCAGGGAGCAGAA
GGGGCTGTCTTCTCGTATGGCGGTTTTTCTCAGGGGGTGTCGAAATGTTG
CGCTATAAGGCCTTTCACAACAAAATTCTCAGGgccattttctttttaaa
tccaaaaaatatGGTAGTTTTTCGAAAAAAGGGAATATTGGTAGAGAAAT
ATCCCCCCTGGTAAAGAAAGTGCGAATTTGTCAACATTTCAACATTTTAT
CTCCAAGTGTTGGTCACCACACCACTGGTAAATGTTTCATCAATTTGGTT
ATTTATTGGCGAATTTTCTTTGAAGAAATCCTATTGCGATAAATAATATG
AATCATATTAATGTGAAGGTAGGTTCGGACGTTTCAAAGAGCCATAAATT
GAATTTAAACCAGTATAACTTAATTATCCGAAATCGTAAACGAACTAACT
TCGACCTGCATTTTTTATACGATTTTATTCAAGATTTCAACAAGTTCATG
TCTAGTGGGAGAAATTTTACAATTGATCGGGtatgtaatttttttacatt
gaatacGGTGTACACAGGTGTACACATAAAAATAATTCTTAAGAAGAGAA
AGATTTGATTAAAGAACTACACACTTAATAATCTACTGAAATTTTTTCAT
AGatcaaatttcaaagaatttgCTGGACATGCATATACTACAGTGATGAC
CCGTGAAAGAATCCAGGgtagaaattattattttaaaaaatgtgtTGCTT
TTCCATACATAAACCTCGCTACGTTTTAAACGTTATTCTAAAGGCCGTTA
CAGTAAAAAGTGtcataaaatataattaaaatgaTTGATCCTCCTGAATA
TTTTAAATGTAAAGTTCAAACGCAGCagcgttttcattttatttgagtaa
aattcaaaacatataatCAGACGTTTCGGTGTCATCCGATCACCATCATC
agtaaaattgaaatgaaattctgTCATAAAATATCATTTCATATTTTAAG
TTGAAAAcaattttaacttttgttttagacGAAAGGCATCATAACCAAGA
AGAAAACGAGCTGCCGAACGAGCTGCTAATTTTTTTATGCATAAAGCTTT
TTATTTTAAGGacaattttttattatatttccaATAAATCATAAAAGTAT
GGGATCTTTTTTTCATTGTCTCGTAAAAGTTTGAATATTAGAAGGATGAG
AATAGTAAAACTCAAAATCCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026945XLOC_026945Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00043228-exon-sc0004034-1491911889:1361..1529TCONS_00043228-exon-sc0004034-1491911889:1361..1529Clytia hemisphaericaexon
TCONS_00043228-exon-sc0004034-1510915933:1361..1529TCONS_00043228-exon-sc0004034-1510915933:1361..1529Clytia hemisphaericaexon
TCONS_00043228-exon-sc0004034-1575043694:1361..1529TCONS_00043228-exon-sc0004034-1575043694:1361..1529Clytia hemisphaericaexon
TCONS_00043228-exon-sc0004034-1491911889:6317..6369TCONS_00043228-exon-sc0004034-1491911889:6317..6369Clytia hemisphaericaexon
TCONS_00043228-exon-sc0004034-1510915933:6317..6369TCONS_00043228-exon-sc0004034-1510915933:6317..6369Clytia hemisphaericaexon
TCONS_00043228-exon-sc0004034-1575043694:6317..6369TCONS_00043228-exon-sc0004034-1575043694:6317..6369Clytia hemisphaericaexon
TCONS_00043228-exon-sc0004034-1491911889:6818..6928TCONS_00043228-exon-sc0004034-1491911889:6818..6928Clytia hemisphaericaexon
TCONS_00043228-exon-sc0004034-1510915933:6818..6928TCONS_00043228-exon-sc0004034-1510915933:6818..6928Clytia hemisphaericaexon
TCONS_00043228-exon-sc0004034-1575043694:6818..6928TCONS_00043228-exon-sc0004034-1575043694:6818..6928Clytia hemisphaericaexon
TCONS_00043228-exon-sc0004034-1491911889:7213..7277TCONS_00043228-exon-sc0004034-1491911889:7213..7277Clytia hemisphaericaexon
TCONS_00043228-exon-sc0004034-1510915933:7213..7277TCONS_00043228-exon-sc0004034-1510915933:7213..7277Clytia hemisphaericaexon
TCONS_00043228-exon-sc0004034-1575043694:7213..7277TCONS_00043228-exon-sc0004034-1575043694:7213..7277Clytia hemisphaericaexon
TCONS_00043228-exon-sc0004034-1491911889:7589..7781TCONS_00043228-exon-sc0004034-1491911889:7589..7781Clytia hemisphaericaexon
TCONS_00043228-exon-sc0004034-1510915933:7589..7781TCONS_00043228-exon-sc0004034-1510915933:7589..7781Clytia hemisphaericaexon
TCONS_00043228-exon-sc0004034-1575043694:7589..7781TCONS_00043228-exon-sc0004034-1575043694:7589..7781Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0004034supercontigsc0004034:1361..7781 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0905665	0	0	0	0.262547	0	1.22963	1.17394	0	0	0.618533	0.679441	0	0.979292	1.69478	4.32263	3.07281	0.5238	2.47945	1.9755	3.13687	0.282487	1.35537	0	0	2.67431	2.71819	1.36728	1.11443
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00043228 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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