TCONS_00022519 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022519
Unique NameTCONS_00022519
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2143

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022519 ID=TCONS_00022519|Name=TCONS_00022519|organism=Clytia hemisphaerica|type=transcript|length=2143bp
GTTTTAAACACTGGATTTGATcactattttcaacattttgtgtaTCAATA
AGTGATAGATGACCATTCCATCAAAGAGTGCTCGATGATCAGGATCAGAT
CTTCATACAGTGTAcgagaagaaaacaaaagtgacgaTTTGATAAAGAAG
AAACTTAAAGTACTATCATAATTCAACACTTTGTGTAGATAAGATGCATT
ATAAGGGCAacaattctgaaaaaaataataaagattaCTATCAGAAAGTG
CGGACATGTGTGGCTATTCCTTCGACTGGAGGACTAATTTTTACGGCGAT
ACCCCCTACTTGGGTTGGAGAGTGTTCGCTATGTAACTTAGAGAGAATGA
AAAAGTGCCCTTTAGAAAACcaactttataatttttttcccaGCACCAAA
TCGACAATAATGGATCTTCTGTTTTTCACTTTAGTTATAGTGTAAAAtaa
caacaaacaaaaaaaaaatggcaGAATCGTGTAATACATATTGTACTGCG
GACGAACGCCCTCCagttgaaaaatctgaaaatgtttCAGCAATAATTCC
TCATCCCCAAGATATTGGTTACGATGTTGAATTTGTAGAAGAAAACATCA
AATTGGAGGGTATCACGTGTGTCATTTGCTCTTTGGTTATGAGGAGCCCG
ATTCAAGCACACAAATGTGGACACCGCTTTTGTGCAAAATGTATTGAAAA
GTACCACGAAACAAGTGATGGTATTGTCTGTCCCTTCGACCGTCAACCGA
TTGAGattttcaaaGATATCGGAAGGGAACGTGAAATTCTTGAAATGAAG
GTCTACTGTAAAAATCGTCCACAATGCAGTTGGCAATCAGAACTCCGATA
TTTCGAGGATCATATGAAGGAGTGTCTGTTCGAAACGATCGATTGTGATA
TGAATTGTGGTATCAAAGTTCTACGGTCAGATATGAGAAATCATTTGGAA
AATGATTGCCTGGTGGAATTTCCTTGTCAATATCAATCGATCGGATGTCT
ATTCACTggCTCAAAAAGATCTTTAACGGAGCACATGGTCCTATCAACCA
ATCAACATCTCTTGTTCCAAATGCAGCATGAAGTGAGAAAGGTCAAGCAA
GATTTCGATGAAAAATTGAAGGCTAAAGATTTGCAATTAAGGATTCTTGG
TGAACGCTTGAAGACAGTTGAAGGTGAAATTGTCGTATTGagaaatgaaa
agaagaagatgTCAGCTGAAATCAAAACCAAAAACGACAAGATGAATCAA
TTGGACGCAAAGTTAATAGAATTGGAGGATCTGGTTGAGGATAACCAACT
CAAAAATTATAACAAACTTGGGGATATGGCGAAAGCAATAGACggtttga
aagttgaaaatcaaaaagctGTAGCGAAAATAGATACCTTTTCACATcca
ttcattttgaaaattgataattttgacGAACAATTTAAACAAGCGAAAAC
CCAAAATAATATAATCAGATCACGACCATTCCTTTGTTTGGGCCAATACA
AGGGGCAATTGAAGCTATATTTAAATGGCAATAGTAATGGGATAGGCACT
catatatcaatatttttttgtcttaTTGAAGGGCCTCTTGATGACATGAT
TGAATGGCCAATGAAATGGAAGAAATGCACAATTGAACTGATCATAAATG
ACACAGTCATAGGGTCACATATATTGAGGGGCGTAAACGAGAATTTCAAG
AACTTTAAACGTCCGacttttgctgaaaatgaaACCGGAAAACGAGGACC
ATCGAAATTTGTTGACCATAAAGATATACCCCATATCATTCGAGATGATA
TAGTaacgatcaaatttgaaattcattagATGGACTGTGAACTTGGGATA
TTTTTCGAGTCCCAATTATTATTGATAGAAAGTTGCTGAATTTTCTAGAT
TGAATTATTCTAAACGATAGGCTTATTTCTATTGACCCGTAAAAGTCTGT
TTCAAGAAAATTAGCGGTCCATACAGTTTTAAACAGTACTCTCGAtggaa
aataaaatataataatttaaaCTCTGTCTATTACCGTGATATGGGTGCTA
TATGATAATTCGAAATTGCTACGGGGtaatatcagtttgtataaactaaa
atttatcCTACTTTTGCTAATTTTCTGTCTGAATGAGTCGTTG
Run BLAST on NCBI

transcript from alignment at sc0000424:223648..233080+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022519 ID=TCONS_00022519|Name=TCONS_00022519|organism=Clytia hemisphaerica|type=transcript|length=9433bp|location=Sequence derived from alignment at sc0000424:223648..233080+ (Clytia hemisphaerica)
GTTTTAAACACTGGATTTGATcactattttcaacattttgtgtaTCAATA
AGTGATAGATGACCATTCCATCAAAGAGTGCTCGATGATCAGGATCAGAT
CTTCATACAGTGTAcgagaagaaaacaaaagtgacgaTTTGATAAAGAAG
AAACTTAAAGTACTATCATAATTCAACACTTTGTGTAGATAAGATGCATT
ATAAGGGCAacaattctgaaaaaaataataaagattaCTATCAGAAAGTG
CGGACATGTGTGGCTATTCCTTCGACTGGAGGACTAATTTTTACGGCGAT
ACCCCCTACTTGGGTTGGAGAGTGTTCGCTATGTAACTTAGAGAGAATGA
AAAAGTGCCCTTTAGAAAACcaactttataatttttttcccaGCACCAAA
TCGACAATAATGGATCTTCTGTTTTTCACTTTAGTTATAGTGTAAAAtaa
caacaaacaaaaaaaaaatggcaGAATCGTGTAATACATATTGTACTGCG
GACGAACGCCCTCCagttgaaaaatctgaaaatgtttCAGCAATAATTCC
TCATCCCCAAGATATTGGTTACGATGTTGAATTTGTAGAAGAAAACATCA
AATTGGAGGGTATCACGTGTGTCATTTGCTCTTTGGTTATGAGGAGCCCG
ATTCAAGCACACAAATGTGGACACCGCTTTTGTGCAAAATGTATTGAAAA
GTACCACGAAACAAGGTATCGCCTTATTAATCGTCACCCTCTTTGTCTCA
CTAACTCCCCCTCTCTTCTCTCTCAACCCTTCCATTGTTTCCCTTTCCTC
ACCTTTACCCTCTCAATCACTACATCCTTCTTCTCCTTCCCCCTCTTCTC
CACCTCTCTCTTCTCTCTCTCCTTCTCCTCCACCTCCCTCTTCTCCAACT
CCCTTTTCTCCAACTCCCTCTTCTCCACCTTCCTCTTCTCCACCTCCCTC
TTCTCAAACTCCCTCTTCTCCACCTCCCTCTTCTCCTTCTCCCTCTTCTC
CACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCT
CTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTC
TTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTC
CACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCT
CTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTC
TTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTC
CACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCT
CTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTC
TTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTC
CACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCT
CTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTC
TTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTC
CACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCT
CTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTC
TTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTC
CACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCT
CTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTC
TTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTC
CACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCT
CTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTC
TTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTC
CACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCT
CTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTC
TTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTC
CACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCT
CTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTC
TTCTCCACCTCCCTCTTCTCAAACTCCCTCTTCTCCACCTCCCTCTTCTC
CACCTCCCTCTTCTCAAACTCCCTCTTCTCCACCTCCCTCTTCTCCACCT
CTCTCTTCTCAAACTGCCTTTTCTCTACCTCCCTCTTAACTCCACCTCCC
TCTTCTCCACCTCCCTCTTCTCAAACTGCCTTTTCTCTACCTCCCTCGTC
TCCACCTCCCTCTTCTCAAACTCCCTCTTCTCAAACTCCCTTTTCTCCAC
CTCTCTCTTCTCCTTCTCCCTCTTCTCCACCTCCCTCTTCTCCACCTCCC
TCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCTCTCTTC
TCCACCTCCCTCTTCTTCACCTCCCTCTTCTCCAACTCCCTCTTATCCAC
CTCCCTCTTCTCCTTCTCCCTCTCCTCAAACTCCTCCATCTCTCTCTTCT
CCACCTCCCTCTTCTCAAACTCCCTCTTCTCCACCTTCCTCTTCTCAAAC
TCCCTCTTCTCCACCTCCCTCTTTTCCACCTCCCTCTTTTCCACCTCCCT
CTTTTCAAACTCCCTCTTCTCCACCTCCCTCTTCTCCTTCTCCCTCTTCT
CCACCTCCCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACC
TCTCTCTTCTTCACCTCCCTCTTCTTCACCTCCCTCTTCTCCACCTCCCT
CTTTTCCACCTCCCTCTTTTCAAACTCCCTCTTCTCCACCTCCCTCTTCT
CCTTCTCCCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACC
TCTCTCTTCTCCACCTCCCTCTTCTCCACCTCCCTCTTCTCCACCTCCCT
CTTTTCCACCTCCCTCTTTTCAAACTCCCTCTTCTCCACCTCCCTCTTCT
CCTTCTCCCTCTTCTCCTTCTCCCTCTTCTCCACCTCCCTCTTCTCCACC
TCCCTCTTCTCCACCTCTCTCTTCTCCACCTCTCTCTTCTTCACCTCCCT
CTTCTTCACCTCCCTCTTCTCCACCTCCCTCTTTTCCACCTCCCTCTTTT
CCACCTCCCTCTTTTCAAACTCCCTCTTCTCCTTCTCCCTCTTCTCCTTC
TCCCTCTTCTCCACTTCCCTCTTCTCCACCACCCTCTTCTCCAACTCTCT
CTTCTCCACCTCCCTCTTCTCCACCACCCTCTTCTCCAACTCTCTCTTCT
CCACCTCCCTCTTCTCCGCCACCCTCTTCTCCTTCTCCCTCTTTTCAAAC
TCCCTCTTCTCCTTTTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCT
CTTCTCAAACTCTCTCTTCTCCACCTCTCCTTTCTCCACAGCCTTCTTCT
CCACAGCCTTTTTCTCCACCTCCCTCTTCTCGAACTTCCTCTTCTCCTTC
TCCCTCTTCTCCTTCTCCCTCTTCTCCAATTCCATCTTCTTAAACTTCCT
CATCTCCACCACCCTTTTCTCCTTCTCCCTCTTCTCCACATCCCTCTTCT
TCACCTCTCTCTTCTCTACCTCCCTCTTCTCCACTTTCGCTCTTCCCCAA
TTCCTTCTTCTCCACCTCCCTCTTCCTTGCTCACCTTTCTATATCTATAA
CCACTTGCAAACAAATTTTCATCCCTTTCTATAATGGTGCTGTAGGTGTG
ATGccttctaaaattttagaatgttGATAGCTCTGACagtcacttttttt
cttctcaTTTCAGTGATGGTATTGTCTGTCCCTTCGACCGTCAACCGATT
GAGGTAAAGATTctatattttgtttgtttttgaattaaaaaacgGATCAA
TTGACCTTCTTTACTTAAAATCCAATAAATTTCCTTCGCTCCGGACTTAA
TTtaataacaaaatatttctagattttcaaaGATATCGGAAGGGAACGTG
AAATTCTTGAAATGAAGGTCTACTGTAAAAATCGTCCACAATGCAGTTGG
CAATCAGAACTCCGATATTTCGAGGTACCACTatcatttgtaactttttt
cttctgattGATGGTAAATTTCACAGAAGTCACCAGTAGCCTTCTAAGGA
TATTGTAGAAGGAATTAAAACCTCCTTAGGGGGTTCAgaatttgttgttt
ttagtggttctttgatgattttgaaGGGGTATTTATTAGTACGTCGCTCA
CAATTTCTTACAGGATCATATGAAGGAGTGTCTGTTCGAAACGATCGATT
GTGATATGAATTGTGGTATCAAAGTTCTACGGTCAGATGTAAGGTTTTAT
TGTATTGATCCTGAAATCATGTACGTGTTCTGTCTTTGGTATAGGTTTGT
AGATTTCAGAGAATCATTGACCATTCCCatagttcggacccccccccctt
ccctaagggggggatgacaccttccaaaaaaagtgaagaaggggggggtc
agagattttcactaaaaaggggGGGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTATATATAAACATTGCATGGGGAATACTTCTGTCAACATGTATAATGT
GTCAACTATTTTAATGTCAACTATATTTTACTGTTTCAgaccccccccct
ttcttaaggggggggatgacaccttccaaaaaagttaagaagggggggtc
agagattttcactaaaaaggggGGGATAGTAAGAAGGGGGGggtcgttta
agaaggggggcttacatatattgtagattattttccagcactgttatgaa
atttggtctacatgaaaggaagttctttattttcNCAAACTCCCTCTTCT
CCACCTCCCTCTTCTCCTTCTCCCTCTTCTCCACCTCCCTCTTCTCCACC
TCTCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCCCT
CTTCTCCACCTCCCTCTTTTCCACCTCCCTCTTTTCAAACTCCCTCTTCT
CCACCTCCCTCTTCTCCTTCTCCCTCTTCTCCTTCTCCCTCTTCTCCACC
TCCCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCTCT
CTTCTTCACCTCCCTCTTCTTCACCTCCCTCTTCTCCACCTCCCTCTTTT
CCACCTCCCTCTTTTCCACCTCCCTCTTTTCAAACTCCCTCTTCTCCTTC
TCCCTCTTCTCCTTCTCCCTCTTCTCCACCTCCCTCTTCTCCACCACCCT
CTTCTCCAACTCTCTCTTCTCCACCTCCCTCTTCTCCGCCACCCTCTTCT
CCTTCTCCCTCTTTTCAAACTCCCTCTTCTCCTTTTCTCTCTTCTCCACC
TCCCTCTTCTCCACCTCTCTCTTCTCAAACTCTCTCTTCTCCACCTCTCC
TTTCTCCACAGCCTTCTTCTCCACAGCCTTTTTCTCCACCTCCCTCTTCT
CGAACTTCCTCTTCTCCTTCTCCCTCTTCTCCTTCTCCCTCTTCTCCAAT
TCCATCTTCTTAAACTTCCTCATCTCCACCACCCTTTTCTCCTTCTCCCT
CTTCTCCACATCCCTCTTCTTCACCTCTCTCTTCTCTACCTCCCTCTTCT
CCACTTTCGCTCTTCCCCAATTCCTTCTTCTCCACCTCCCTCTTCCTTGC
TCACCTTTCTATATCTATAACCACTTGCAAACAAATTTTCATCCCTTTCT
ATAATGGTGCTGTAGGTGTGATGccttctaaaattttagaatgttGATAG
CTCTGACagtcactttttttcttctcaTTTCAGTGATGGTATTGTCTGTC
CCTTCGACCGTCAACCGATTGAGGTAAAGATTctatattttgtttgtttt
tgaattaaaaaacgGATCAATTGACCTTCTTTACTTAAAATCCAATAAAT
TTCCTTCGCTCCGGACTTAATTtaataacaaaatatttctagattttcaa
aGATATCGGAAGGGAACGTGAAATTCTTGAAATGAAGGTCTACTGTAAAA
ATCGTCCACAATGCAGTTGGCAATCAGAACTCCGATATTTCGAGGTACCA
CTatcatttgtaacttttttcttctgattGATGGTAAATTTCACAGAAGT
CACCAGTAGCCTTCTAAGGATATTGTAGAAGGAATTAAAACCTCCTTAGG
GGGTTCAgaatttgttgtttttagtggttctttgatgattttgaaGGGGT
ATTTATTAGTACGTCGCTCACAATTTCTTACAGGATCATATGAAGGAGTG
TCTGTTCGAAACGATCGATTGTGATATGAATTGTGGTATCAAAGTTCTAC
GGTCAGATGTAAGGTTTTATTGTATTGATCCTGAAATCATGTACGTGTTC
TGTCTTTGGTATAGGTTTGTAGATTTCAGAGAATCATTGACCATTCCCAT
AGTTCGGACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTAAagaaggggggcttacatatat
tgtagattattttccagcactgttatgaaatttggtctacatgaaaggaa
gttctttattttctctaaaatttggtattatatttgccagacttaatttt
tctttactgtttcccttccctttttaccataaaaaatttagcccgaaacc
cttgggggataggcatttttaaaggttgagggggatgccaagaagggggg
atcatttaagaaggggggggataaattttgttttgatagaaAAAGGGAGG
TACAATTTTGGGTTATTGTATGGATTTCCTCAAGACAATAAAGCGTGGCT
TTGATCTTTTAGTTTAGGATCATTTCCTTTTTAGATGAGAAATCATTTGG
AAAATGATTGCCTGGTGGAATTTCCTTGTCAATATCAATCGATCGGATGT
CTATTCACTGTAAGTTTTCTCTAGGTTTAGAGGTCTAATTCGAGACGAAA
ATGGTTCCCAAACACTATTGTGTGGACACCAATAATTTGAAACGTCACCA
AGCAAGAAGTTACAAATCAAAGCAGATCAAAACCGtttttatacacccct
gtcgcacagccccggtggaacttttttcctcagtgaggataaaaattctt
atcaaaatcataaatggggatggaaattctattgttccaaggttaaaaaa
cccaaTGGGGAtgtttttggagtgcaatttttaaacatggaatttcgagt
tgggatgaaatcaaggtcgatttcccagtggggctgaaattcaagggtat
tttccaaCCGGGGAGGAaattttgcttaattttccGGTGGGGCTGGTGTT
CCAGCGGGTCTGtgcgacacaggggtgtttttattGGAATGGAATTGCTG
CGTTCTATTGATCCGAAACGTTTAAAAAACCAGTATGAACACTTTCTATC
CGTAACAAAAACCATACCGAAGCTATGctaaccgtaacgtctgaacatgt
tcttaaattgtGTGGAAAGATATTCACAtcatgtttatttttttcagggC
TCAAAAAGATCTTTAACGGAGCACATGGTCCTATCAACCAATCAACATCT
CTTGTTCCAAATGCAGCATGAAGTGAGAAAGGTCAAGCAAGATTTCGATG
AAAAATTGAAGGCTAAAGATTTGCAATTAAGGATTCTTGGTGAACGCTTG
AAGACAGTTGAAGGTGAAATTGTCGTATTGagaaatgaaaagaagaagat
gTCAGCTGAAATCAAAACCAAAAACGACAAGATGAATCAATTGGACGCAA
AGTTAATAGAATTGGAGGATCTGGTTGAGGATAACCAACTCAAAAATTAT
AACAAACTTGGGGATATGGCGAAAGCAATAGACggtttgaaagttgaaaa
tcaaaaagctGTAGCGAAAATAGATACCTTTTCACATccattcattttga
aaattgataattttgacGAACAATTTAAACAAGCGAAAACCCAAAATAAT
ATAATCAGATCACGACCATTCCTTTGTTTGGGCCAATACAAGGGGCAATT
GAAGCTATATTTAAATGGCAATAGTAATGGGATAGGCACTcatatatcaa
tatttttttgtcttaTTGAAGGGCCTCTTGATGACATGATTGAATGGCCA
ATGAAATGGAAGAAATGCACAATTGAACTGATCATAAATGACACAGTCAT
AGGGTCACATATATTGAGGGGCGTAAACGAGAATTTCAAGAACTTTAAAC
GTCCGacttttgctgaaaatgaaACCGGAAAACGAGGACCATCGAAATTT
GTTGACCATAAAGATATACCCCATATCATTCGAGATGATATAGTaacgat
caaatttgaaattcattagATGGACTGTGAACTTGGGATATTTTTCGAGT
CCCAATTATTATTGATAGAAAGTTGCTGAATTTTCTAGATTGAATTATTC
TAAACGATAGGCTTATTTCTATTGACCCGTAAAAGTCTGTTTCAAGAAAA
TTAGCGGTCCATACAGTTTTAAACAGTACTCTCGAtggaaaataaaatat
aataatttaaaCTCTGTCTATTACCGTGATATGGGTGCTATATGATAATT
CGAAATTGCTACGGGGtaatatcagtttgtataaactaaaatttatcCTA
CTTTTGCTAATTTTCTGTCTGAATGAGTCGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012629XLOC_012629Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022519-exon-sc0000424-1491911889:223648..224362TCONS_00022519-exon-sc0000424-1491911889:223648..224362Clytia hemisphaericaexon
TCONS_00022519-exon-sc0000424-1510915933:223648..224362TCONS_00022519-exon-sc0000424-1510915933:223648..224362Clytia hemisphaericaexon
TCONS_00022519-exon-sc0000424-1575043694:223648..224362TCONS_00022519-exon-sc0000424-1575043694:223648..224362Clytia hemisphaericaexon
TCONS_00022519-exon-sc0000424-1491911889:227661..227700TCONS_00022519-exon-sc0000424-1491911889:227661..227700Clytia hemisphaericaexon
TCONS_00022519-exon-sc0000424-1510915933:227661..227700TCONS_00022519-exon-sc0000424-1510915933:227661..227700Clytia hemisphaericaexon
TCONS_00022519-exon-sc0000424-1575043694:227661..227700TCONS_00022519-exon-sc0000424-1575043694:227661..227700Clytia hemisphaericaexon
TCONS_00022519-exon-sc0000424-1491911889:227820..227921TCONS_00022519-exon-sc0000424-1491911889:227820..227921Clytia hemisphaericaexon
TCONS_00022519-exon-sc0000424-1510915933:227820..227921TCONS_00022519-exon-sc0000424-1510915933:227820..227921Clytia hemisphaericaexon
TCONS_00022519-exon-sc0000424-1575043694:227820..227921TCONS_00022519-exon-sc0000424-1575043694:227820..227921Clytia hemisphaericaexon
TCONS_00022519-exon-sc0000424-1491911889:230281..230355TCONS_00022519-exon-sc0000424-1491911889:230281..230355Clytia hemisphaericaexon
TCONS_00022519-exon-sc0000424-1510915933:230281..230355TCONS_00022519-exon-sc0000424-1510915933:230281..230355Clytia hemisphaericaexon
TCONS_00022519-exon-sc0000424-1575043694:230281..230355TCONS_00022519-exon-sc0000424-1575043694:230281..230355Clytia hemisphaericaexon
TCONS_00022519-exon-sc0000424-1491911889:231282..231356TCONS_00022519-exon-sc0000424-1491911889:231282..231356Clytia hemisphaericaexon
TCONS_00022519-exon-sc0000424-1510915933:231282..231356TCONS_00022519-exon-sc0000424-1510915933:231282..231356Clytia hemisphaericaexon
TCONS_00022519-exon-sc0000424-1575043694:231282..231356TCONS_00022519-exon-sc0000424-1575043694:231282..231356Clytia hemisphaericaexon
TCONS_00022519-exon-sc0000424-1491911889:231945..233080TCONS_00022519-exon-sc0000424-1491911889:231945..233080Clytia hemisphaericaexon
TCONS_00022519-exon-sc0000424-1510915933:231945..233080TCONS_00022519-exon-sc0000424-1510915933:231945..233080Clytia hemisphaericaexon
TCONS_00022519-exon-sc0000424-1575043694:231945..233080TCONS_00022519-exon-sc0000424-1575043694:231945..233080Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000424supercontigsc0000424:223648..233080 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.319825	0	1.65084e-08	0	0.125812	0	0.122449	0.346502	0.16402	0	0	0.0687692	0.162838	0.217021	0.67008	0.138048	0.542614	0.458296	0.527286	0.12508	0.18863	0.516172	0.0938963	0.2952	0	0	0.60145	0.230504	0.553187	0.256326
Blast
[Close]
BLAST of TCONS_00022519 vs. Swiss-Prot (Human)
Match: TRAF5 (TNF receptor-associated factor 5 OS=Homo sapiens GN=TRAF5 PE=1 SV=2)

HSP 1 Score: 113.62 bits (283), Expect = 3.267e-26
Identity = 111/456 (24.34%), Postives = 194/456 (42.54%), Query Frame = 3 
Query:  576 VEFVEENIKLEGITCVICSLVMRSPIQAHKCGHRFCAKCIEKYHETSDGIVCPFDRQPI---EIFKDIGREREILEMKVYCKNRPQCSWQSELRYFEDHMKECLFETIDC-DMNCGIKVLRSDMRNHLENDCLV--------------------------EFP-----------------------------CQYQSIGCLFTGSKRSLTEHMVLSTNQHLLFQMQHEVRKVKQ--DFDEKLKAKDLQLRILGERLKTVEGEIVVLRNEKKKMSAEIKTKN--------------DKMNQLDAKLIELEDLVEDNQLKNYNKLGDMAKAIDGLK-----VEN--------QKAVAKIDT-----------------------FSHPFILKIDNFDEQFKQAKTQNNI-IRSRPFLCLG-QYKGQLKLYLNGNSNGIGTHISIFFCLIEGPLDDMIE 1604
            VE +EE  K     C  C  V+ +P Q   CGHRFC  CI    E +   +CP D++ I   E+FKD   +RE+L + VYC N P C+ +  L  ++DH+++CLF+ + C +  C   VLR D++ HL   C                            E+P                             C ++  GC  T  +R+L +H   +  +H+   ++  V+  +Q  D  + L+ K+ +++ L E +K +E E         K  A++  KN              DK   L+A++ +L  +V  NQ +N   L  + +A+D +K     +EN        ++   K DT                       ++   I K+ ++  + ++A   + + I S+ F      Y+   + YLNG+ +G G+H+S++F ++ G  D +++
Sbjct:   36 VERLEERYK-----CAFCHSVLHNPHQT-GCGHRFCQHCILSLRELNTVPICPVDKEVIKSQEVFKDNCCKREVLNLYVYCSNAPGCNAKVILGRYQDHLQQCLFQPVQCSNEKCREPVLRKDLKEHLSASCQFRKEKCLYCKKDVVVINLQNHEENLCPEYPVFCPNNCAKIILKTEVDEHLAVCPEAEQDCPFKHYGCAVTDKRRNLQQHEHSALREHMRLVLEKNVQLEEQISDLHKSLEQKESKIQQLAETIKKLEKEF--------KQFAQLFGKNGSFLPNIQVFASHIDKSAWLEAQVHQLLQMV--NQQQNKFDLRPLMEAVDTVKQKITLLENNDQRLAVLEEETNKHDTHINIHKAQLSKNEERFKLLEGTCYNGKLIWKVTDYKMKKREAVDGHTVSIFSQSFYTSRCGYRLCARAYLNGDGSGRGSHLSLYFVVMRGEFDSLLQ 475
The following BLAST results are available for this feature:
BLAST of TCONS_00022519 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF53.267e-2624.34TNF receptor-associated factor 5 OS=Homo sapiens G... [more]
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