XLOC_012629 (gene) - C. hemisphaerica

Overview
NameXLOC_012629
Unique NameXLOC_012629
Typegene
OrganismClytia hemisphaerica (Jellyfish)

Sequence
The following sequences are available for this feature:

gene from alignment at sc0000424:223648..233080+

Legend: gene
Hold the cursor over a type above to highlight its positions in the sequence below.
>XLOC_012629 ID=XLOC_012629|Name=XLOC_012629|organism=Clytia hemisphaerica|type=gene|length=9433bp|location=Sequence derived from alignment at sc0000424:223648..233080+ (Clytia hemisphaerica)
GTTTTAAACACTGGATTTGATcactattttcaacattttgtgtaTCAATA
AGTGATAGATGACCATTCCATCAAAGAGTGCTCGATGATCAGGATCAGAT
CTTCATACAGTGTAcgagaagaaaacaaaagtgacgaTTTGATAAAGAAG
AAACTTAAAGTACTATCATAATTCAACACTTTGTGTAGATAAGATGCATT
ATAAGGGCAacaattctgaaaaaaataataaagattaCTATCAGAAAGTG
CGGACATGTGTGGCTATTCCTTCGACTGGAGGACTAATTTTTACGGCGAT
ACCCCCTACTTGGGTTGGAGAGTGTTCGCTATGTAACTTAGAGAGAATGA
AAAAGTGCCCTTTAGAAAACcaactttataatttttttcccaGCACCAAA
TCGACAATAATGGATCTTCTGTTTTTCACTTTAGTTATAGTGTAAAAtaa
caacaaacaaaaaaaaaatggcaGAATCGTGTAATACATATTGTACTGCG
GACGAACGCCCTCCagttgaaaaatctgaaaatgtttCAGCAATAATTCC
TCATCCCCAAGATATTGGTTACGATGTTGAATTTGTAGAAGAAAACATCA
AATTGGAGGGTATCACGTGTGTCATTTGCTCTTTGGTTATGAGGAGCCCG
ATTCAAGCACACAAATGTGGACACCGCTTTTGTGCAAAATGTATTGAAAA
GTACCACGAAACAAGGTATCGCCTTATTAATCGTCACCCTCTTTGTCTCA
CTAACTCCCCCTCTCTTCTCTCTCAACCCTTCCATTGTTTCCCTTTCCTC
ACCTTTACCCTCTCAATCACTACATCCTTCTTCTCCTTCCCCCTCTTCTC
CACCTCTCTCTTCTCTCTCTCCTTCTCCTCCACCTCCCTCTTCTCCAACT
CCCTTTTCTCCAACTCCCTCTTCTCCACCTTCCTCTTCTCCACCTCCCTC
TTCTCAAACTCCCTCTTCTCCACCTCCCTCTTCTCCTTCTCCCTCTTCTC
CACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCT
CTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTC
TTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTC
CACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCT
CTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTC
TTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTC
CACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCT
CTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTC
TTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTC
CACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCT
CTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTC
TTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTC
CACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCT
CTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTC
TTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTC
CACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCT
CTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTC
TTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTC
CACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCT
CTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTC
TTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTC
CACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCT
CTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTC
TTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTC
CACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCT
CTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTC
TTCTCCACCTCCCTCTTCTCAAACTCCCTCTTCTCCACCTCCCTCTTCTC
CACCTCCCTCTTCTCAAACTCCCTCTTCTCCACCTCCCTCTTCTCCACCT
CTCTCTTCTCAAACTGCCTTTTCTCTACCTCCCTCTTAACTCCACCTCCC
TCTTCTCCACCTCCCTCTTCTCAAACTGCCTTTTCTCTACCTCCCTCGTC
TCCACCTCCCTCTTCTCAAACTCCCTCTTCTCAAACTCCCTTTTCTCCAC
CTCTCTCTTCTCCTTCTCCCTCTTCTCCACCTCCCTCTTCTCCACCTCCC
TCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCTCTCTTC
TCCACCTCCCTCTTCTTCACCTCCCTCTTCTCCAACTCCCTCTTATCCAC
CTCCCTCTTCTCCTTCTCCCTCTCCTCAAACTCCTCCATCTCTCTCTTCT
CCACCTCCCTCTTCTCAAACTCCCTCTTCTCCACCTTCCTCTTCTCAAAC
TCCCTCTTCTCCACCTCCCTCTTTTCCACCTCCCTCTTTTCCACCTCCCT
CTTTTCAAACTCCCTCTTCTCCACCTCCCTCTTCTCCTTCTCCCTCTTCT
CCACCTCCCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACC
TCTCTCTTCTTCACCTCCCTCTTCTTCACCTCCCTCTTCTCCACCTCCCT
CTTTTCCACCTCCCTCTTTTCAAACTCCCTCTTCTCCACCTCCCTCTTCT
CCTTCTCCCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACC
TCTCTCTTCTCCACCTCCCTCTTCTCCACCTCCCTCTTCTCCACCTCCCT
CTTTTCCACCTCCCTCTTTTCAAACTCCCTCTTCTCCACCTCCCTCTTCT
CCTTCTCCCTCTTCTCCTTCTCCCTCTTCTCCACCTCCCTCTTCTCCACC
TCCCTCTTCTCCACCTCTCTCTTCTCCACCTCTCTCTTCTTCACCTCCCT
CTTCTTCACCTCCCTCTTCTCCACCTCCCTCTTTTCCACCTCCCTCTTTT
CCACCTCCCTCTTTTCAAACTCCCTCTTCTCCTTCTCCCTCTTCTCCTTC
TCCCTCTTCTCCACTTCCCTCTTCTCCACCACCCTCTTCTCCAACTCTCT
CTTCTCCACCTCCCTCTTCTCCACCACCCTCTTCTCCAACTCTCTCTTCT
CCACCTCCCTCTTCTCCGCCACCCTCTTCTCCTTCTCCCTCTTTTCAAAC
TCCCTCTTCTCCTTTTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCT
CTTCTCAAACTCTCTCTTCTCCACCTCTCCTTTCTCCACAGCCTTCTTCT
CCACAGCCTTTTTCTCCACCTCCCTCTTCTCGAACTTCCTCTTCTCCTTC
TCCCTCTTCTCCTTCTCCCTCTTCTCCAATTCCATCTTCTTAAACTTCCT
CATCTCCACCACCCTTTTCTCCTTCTCCCTCTTCTCCACATCCCTCTTCT
TCACCTCTCTCTTCTCTACCTCCCTCTTCTCCACTTTCGCTCTTCCCCAA
TTCCTTCTTCTCCACCTCCCTCTTCCTTGCTCACCTTTCTATATCTATAA
CCACTTGCAAACAAATTTTCATCCCTTTCTATAATGGTGCTGTAGGTGTG
ATGccttctaaaattttagaatgttGATAGCTCTGACagtcacttttttt
cttctcaTTTCAGTGATGGTATTGTCTGTCCCTTCGACCGTCAACCGATT
GAGGTAAAGATTctatattttgtttgtttttgaattaaaaaacgGATCAA
TTGACCTTCTTTACTTAAAATCCAATAAATTTCCTTCGCTCCGGACTTAA
TTtaataacaaaatatttctagattttcaaaGATATCGGAAGGGAACGTG
AAATTCTTGAAATGAAGGTCTACTGTAAAAATCGTCCACAATGCAGTTGG
CAATCAGAACTCCGATATTTCGAGGTACCACTatcatttgtaactttttt
cttctgattGATGGTAAATTTCACAGAAGTCACCAGTAGCCTTCTAAGGA
TATTGTAGAAGGAATTAAAACCTCCTTAGGGGGTTCAgaatttgttgttt
ttagtggttctttgatgattttgaaGGGGTATTTATTAGTACGTCGCTCA
CAATTTCTTACAGGATCATATGAAGGAGTGTCTGTTCGAAACGATCGATT
GTGATATGAATTGTGGTATCAAAGTTCTACGGTCAGATGTAAGGTTTTAT
TGTATTGATCCTGAAATCATGTACGTGTTCTGTCTTTGGTATAGGTTTGT
AGATTTCAGAGAATCATTGACCATTCCCatagttcggacccccccccctt
ccctaagggggggatgacaccttccaaaaaaagtgaagaaggggggggtc
agagattttcactaaaaaggggGGGNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTATATATAAACATTGCATGGGGAATACTTCTGTCAACATGTATAATGT
GTCAACTATTTTAATGTCAACTATATTTTACTGTTTCAgaccccccccct
ttcttaaggggggggatgacaccttccaaaaaagttaagaagggggggtc
agagattttcactaaaaaggggGGGATAGTAAGAAGGGGGGggtcgttta
agaaggggggcttacatatattgtagattattttccagcactgttatgaa
atttggtctacatgaaaggaagttctttattttcNCAAACTCCCTCTTCT
CCACCTCCCTCTTCTCCTTCTCCCTCTTCTCCACCTCCCTCTTCTCCACC
TCTCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCCCT
CTTCTCCACCTCCCTCTTTTCCACCTCCCTCTTTTCAAACTCCCTCTTCT
CCACCTCCCTCTTCTCCTTCTCCCTCTTCTCCTTCTCCCTCTTCTCCACC
TCCCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCTCT
CTTCTTCACCTCCCTCTTCTTCACCTCCCTCTTCTCCACCTCCCTCTTTT
CCACCTCCCTCTTTTCCACCTCCCTCTTTTCAAACTCCCTCTTCTCCTTC
TCCCTCTTCTCCTTCTCCCTCTTCTCCACCTCCCTCTTCTCCACCACCCT
CTTCTCCAACTCTCTCTTCTCCACCTCCCTCTTCTCCGCCACCCTCTTCT
CCTTCTCCCTCTTTTCAAACTCCCTCTTCTCCTTTTCTCTCTTCTCCACC
TCCCTCTTCTCCACCTCTCTCTTCTCAAACTCTCTCTTCTCCACCTCTCC
TTTCTCCACAGCCTTCTTCTCCACAGCCTTTTTCTCCACCTCCCTCTTCT
CGAACTTCCTCTTCTCCTTCTCCCTCTTCTCCTTCTCCCTCTTCTCCAAT
TCCATCTTCTTAAACTTCCTCATCTCCACCACCCTTTTCTCCTTCTCCCT
CTTCTCCACATCCCTCTTCTTCACCTCTCTCTTCTCTACCTCCCTCTTCT
CCACTTTCGCTCTTCCCCAATTCCTTCTTCTCCACCTCCCTCTTCCTTGC
TCACCTTTCTATATCTATAACCACTTGCAAACAAATTTTCATCCCTTTCT
ATAATGGTGCTGTAGGTGTGATGccttctaaaattttagaatgttGATAG
CTCTGACagtcactttttttcttctcaTTTCAGTGATGGTATTGTCTGTC
CCTTCGACCGTCAACCGATTGAGGTAAAGATTctatattttgtttgtttt
tgaattaaaaaacgGATCAATTGACCTTCTTTACTTAAAATCCAATAAAT
TTCCTTCGCTCCGGACTTAATTtaataacaaaatatttctagattttcaa
aGATATCGGAAGGGAACGTGAAATTCTTGAAATGAAGGTCTACTGTAAAA
ATCGTCCACAATGCAGTTGGCAATCAGAACTCCGATATTTCGAGGTACCA
CTatcatttgtaacttttttcttctgattGATGGTAAATTTCACAGAAGT
CACCAGTAGCCTTCTAAGGATATTGTAGAAGGAATTAAAACCTCCTTAGG
GGGTTCAgaatttgttgtttttagtggttctttgatgattttgaaGGGGT
ATTTATTAGTACGTCGCTCACAATTTCTTACAGGATCATATGAAGGAGTG
TCTGTTCGAAACGATCGATTGTGATATGAATTGTGGTATCAAAGTTCTAC
GGTCAGATGTAAGGTTTTATTGTATTGATCCTGAAATCATGTACGTGTTC
TGTCTTTGGTATAGGTTTGTAGATTTCAGAGAATCATTGACCATTCCCAT
AGTTCGGACCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNTAAagaaggggggcttacatatat
tgtagattattttccagcactgttatgaaatttggtctacatgaaaggaa
gttctttattttctctaaaatttggtattatatttgccagacttaatttt
tctttactgtttcccttccctttttaccataaaaaatttagcccgaaacc
cttgggggataggcatttttaaaggttgagggggatgccaagaagggggg
atcatttaagaaggggggggataaattttgttttgatagaaAAAGGGAGG
TACAATTTTGGGTTATTGTATGGATTTCCTCAAGACAATAAAGCGTGGCT
TTGATCTTTTAGTTTAGGATCATTTCCTTTTTAGATGAGAAATCATTTGG
AAAATGATTGCCTGGTGGAATTTCCTTGTCAATATCAATCGATCGGATGT
CTATTCACTGTAAGTTTTCTCTAGGTTTAGAGGTCTAATTCGAGACGAAA
ATGGTTCCCAAACACTATTGTGTGGACACCAATAATTTGAAACGTCACCA
AGCAAGAAGTTACAAATCAAAGCAGATCAAAACCGtttttatacacccct
gtcgcacagccccggtggaacttttttcctcagtgaggataaaaattctt
atcaaaatcataaatggggatggaaattctattgttccaaggttaaaaaa
cccaaTGGGGAtgtttttggagtgcaatttttaaacatggaatttcgagt
tgggatgaaatcaaggtcgatttcccagtggggctgaaattcaagggtat
tttccaaCCGGGGAGGAaattttgcttaattttccGGTGGGGCTGGTGTT
CCAGCGGGTCTGtgcgacacaggggtgtttttattGGAATGGAATTGCTG
CGTTCTATTGATCCGAAACGTTTAAAAAACCAGTATGAACACTTTCTATC
CGTAACAAAAACCATACCGAAGCTATGctaaccgtaacgtctgaacatgt
tcttaaattgtGTGGAAAGATATTCACAtcatgtttatttttttcagggC
TCAAAAAGATCTTTAACGGAGCACATGGTCCTATCAACCAATCAACATCT
CTTGTTCCAAATGCAGCATGAAGTGAGAAAGGTCAAGCAAGATTTCGATG
AAAAATTGAAGGCTAAAGATTTGCAATTAAGGATTCTTGGTGAACGCTTG
AAGACAGTTGAAGGTGAAATTGTCGTATTGagaaatgaaaagaagaagat
gTCAGCTGAAATCAAAACCAAAAACGACAAGATGAATCAATTGGACGCAA
AGTTAATAGAATTGGAGGATCTGGTTGAGGATAACCAACTCAAAAATTAT
AACAAACTTGGGGATATGGCGAAAGCAATAGACggtttgaaagttgaaaa
tcaaaaagctGTAGCGAAAATAGATACCTTTTCACATccattcattttga
aaattgataattttgacGAACAATTTAAACAAGCGAAAACCCAAAATAAT
ATAATCAGATCACGACCATTCCTTTGTTTGGGCCAATACAAGGGGCAATT
GAAGCTATATTTAAATGGCAATAGTAATGGGATAGGCACTcatatatcaa
tatttttttgtcttaTTGAAGGGCCTCTTGATGACATGATTGAATGGCCA
ATGAAATGGAAGAAATGCACAATTGAACTGATCATAAATGACACAGTCAT
AGGGTCACATATATTGAGGGGCGTAAACGAGAATTTCAAGAACTTTAAAC
GTCCGacttttgctgaaaatgaaACCGGAAAACGAGGACCATCGAAATTT
GTTGACCATAAAGATATACCCCATATCATTCGAGATGATATAGTaacgat
caaatttgaaattcattagATGGACTGTGAACTTGGGATATTTTTCGAGT
CCCAATTATTATTGATAGAAAGTTGCTGAATTTTCTAGATTGAATTATTC
TAAACGATAGGCTTATTTCTATTGACCCGTAAAAGTCTGTTTCAAGAAAA
TTAGCGGTCCATACAGTTTTAAACAGTACTCTCGAtggaaaataaaatat
aataatttaaaCTCTGTCTATTACCGTGATATGGGTGCTATATGATAATT
CGAAATTGCTACGGGGtaatatcagtttgtataaactaaaatttatcCTA
CTTTTGCTAATTTTCTGTCTGAATGAGTCGTTG
Gene-mRNA-Prot
The following transcript feature(s) are a part of this gene:
Feature NameUnique NameSpeciesType
TCONS_00022517TCONS_00022517Clytia hemisphaericatranscript
TCONS_00022518TCONS_00022518Clytia hemisphaericatranscript
TCONS_00022519TCONS_00022519Clytia hemisphaericatranscript
TCONS_00022520TCONS_00022520Clytia hemisphaericatranscript
TCONS_00022521TCONS_00022521Clytia hemisphaericatranscript
TCONS_00022522TCONS_00022522Clytia hemisphaericatranscript
TCONS_00022523TCONS_00022523Clytia hemisphaericatranscript
TCONS_00022524TCONS_00022524Clytia hemisphaericatranscript
TCONS_00022525TCONS_00022525Clytia hemisphaericatranscript
TCONS_00022526TCONS_00022526Clytia hemisphaericatranscript
TCONS_00022527TCONS_00022527Clytia hemisphaericatranscript
The following polypeptide feature(s) derives from this gene:
Feature NameUnique NameSpeciesType
TCONS_00022522-proteinTCONS_00022522-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000424supercontigsc0000424:223648..233080 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.51	8.66	5.84	6.7	4.46	2.95	5.52	5.88	9.98	12.19	9.6	8.27	9.73	11.51	26.47	25.86	18.34	20.89	24.58	21.57	13.05	12.87	15.65	17.32	12.4	15.17	15.24	14.87	20.75	16.85