TCONS_00022527 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022527
Unique NameTCONS_00022527
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1473

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022527 ID=TCONS_00022527|Name=TCONS_00022527|organism=Clytia hemisphaerica|type=transcript|length=1473bp
GTTATAGTGTAAAAtaacaacaaacaaaaaaaaaatggcaGAATCGTGTA
ATACATATTGTACTGCGGACGAACGCCCTCCagttgaaaaatctgaaaat
gtttCAGCAATAATTCCTCATCCCCAAGATATTGGTTACGATGTTGAATT
TGTAGAAGAAAACATCAAATTGGAGGGTATCACGTGTGTCATTTGCTCTT
TGGTTATGAGGAGCCCGATTCAAGCACACAAATGTGGACACCGCTTTTGT
GCAAAATGTATTGAAAAGTACCACGAAACAAGTGATGGTATTGTCTGTCC
CTTCGACCGTCAACCGATTGAGattttcaaaGATATCGGAAGGGAACGTG
AAATTCTTGAAATGAAGGTCTACTGTAAAAATCGTCCACAATGCAGTTGG
CAATCAGAACTCCGATATTTCGAGGATCATATGAAGGAGTGTCTGTTCGA
AACGATCGATTGTGATATGAATTGTGGTATCAAAGTTCTACGGTCAGATA
TGAGAAATCATTTGGAAAATGATTGCCTGGTGGAATTTCCTTGTCAATAT
CAATCGATCGGATGTCTATTCACTggCTCAAAAAGATCTTTAACGGAGCA
CATGGTCCTATCAACCAATCAACATCTCTTGTTCCAAATGCAGCATGAAG
TGAGAAAGGTCAAGCAAGATTTCGATGAAAAATTGAAGGCTAAAGATTTG
CAATTAAGGATTCTTGGTGAACGCTTGAAGACAGTTGAAGGTGAAATTGT
CGTATTGagaaatgaaaagaagaagatgTCAGCTGAAATCAAAACCAAAA
ACGACAAGATGAATCAATTGGACGCAAAGTTAATAGAATTGGAGGATCTG
GTTGAGGATAACCAACTCAAAAATTATAACAAACTTGGGGATATGGCGAA
AGCAATAGACgGGCCTCTTGATGACATGATTGAATGGCCAATGAAATGGA
AGAAATGCACAATTGAACTGATCATAAATGACACAGTCATAGGGTCACAT
ATATTGAGGGGCGTAAACGAGAATTTCAAGAACTTTAAACGTCCGacttt
tgctgaaaatgaaACCGGAAAACGAGGACCATCGAAATTTGTTGACCATA
AAGATATACCCCATATCATTCGAGATGATATAGTaacgatcaaatttgaa
attcattagATGGACTGTGAACTTGGGATATTTTTCGAGTCCCAATTATT
ATTGATAGAAAGTTGCTGAATTTTCTAGATTGAATTATTCTAAACGATAG
GCTTATTTCTATTGACCCGTAAAAGTCTGTTTCAAGAAAATTAGCGGTCC
ATACAGTTTTAAACAGTACTCTCGAtggaaaataaaatataataatttaa
aCTCTGTCTATTACCGTGATATGGGTGCTATATGATAATTCGAAATTGCT
ACGGGGtaatatcagtttgtataaactaaaatttatcCTACTTTTGCTAA
TTTTCTGTCTGAATGAGTCGTTG
Run BLAST on NCBI

transcript from alignment at sc0000424:224081..233080+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022527 ID=TCONS_00022527|Name=TCONS_00022527|organism=Clytia hemisphaerica|type=transcript|length=9000bp|location=Sequence derived from alignment at sc0000424:224081..233080+ (Clytia hemisphaerica)
GTTATAGTGTAAAAtaacaacaaacaaaaaaaaaatggcaGAATCGTGTA
ATACATATTGTACTGCGGACGAACGCCCTCCagttgaaaaatctgaaaat
gtttCAGCAATAATTCCTCATCCCCAAGATATTGGTTACGATGTTGAATT
TGTAGAAGAAAACATCAAATTGGAGGGTATCACGTGTGTCATTTGCTCTT
TGGTTATGAGGAGCCCGATTCAAGCACACAAATGTGGACACCGCTTTTGT
GCAAAATGTATTGAAAAGTACCACGAAACAAGGTATCGCCTTATTAATCG
TCACCCTCTTTGTCTCACTAACTCCCCCTCTCTTCTCTCTCAACCCTTCC
ATTGTTTCCCTTTCCTCACCTTTACCCTCTCAATCACTACATCCTTCTTC
TCCTTCCCCCTCTTCTCCACCTCTCTCTTCTCTCTCTCCTTCTCCTCCAC
CTCCCTCTTCTCCAACTCCCTTTTCTCCAACTCCCTCTTCTCCACCTTCC
TCTTCTCCACCTCCCTCTTCTCAAACTCCCTCTTCTCCACCTCCCTCTTC
TCCTTCTCCCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCAC
CTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTC
TCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTC
TCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCAC
CTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTC
TCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTC
TCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCAC
CTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTC
TCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTC
TCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCAC
CTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTC
TCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTC
TCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCAC
CTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTC
TCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTC
TCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCAC
CTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTC
TCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTC
TCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCAC
CTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTC
TCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTC
TCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCAC
CTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTC
TCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTC
TCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCAC
CTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTC
TCTTCTCCACCTCCCTCTTCTCCACCTCCCTCTTCTCAAACTCCCTCTTC
TCCACCTCCCTCTTCTCCACCTCCCTCTTCTCAAACTCCCTCTTCTCCAC
CTCCCTCTTCTCCACCTCTCTCTTCTCAAACTGCCTTTTCTCTACCTCCC
TCTTAACTCCACCTCCCTCTTCTCCACCTCCCTCTTCTCAAACTGCCTTT
TCTCTACCTCCCTCGTCTCCACCTCCCTCTTCTCAAACTCCCTCTTCTCA
AACTCCCTTTTCTCCACCTCTCTCTTCTCCTTCTCCCTCTTCTCCACCTC
CCTCTTCTCCACCTCCCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCT
TCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTTCACCTCCCTCTTCTCC
AACTCCCTCTTATCCACCTCCCTCTTCTCCTTCTCCCTCTCCTCAAACTC
CTCCATCTCTCTCTTCTCCACCTCCCTCTTCTCAAACTCCCTCTTCTCCA
CCTTCCTCTTCTCAAACTCCCTCTTCTCCACCTCCCTCTTTTCCACCTCC
CTCTTTTCCACCTCCCTCTTTTCAAACTCCCTCTTCTCCACCTCCCTCTT
CTCCTTCTCCCTCTTCTCCACCTCCCTCTTCTCCACCTCCCTCTTCTCCA
CCTCTCTCTTCTCCACCTCTCTCTTCTTCACCTCCCTCTTCTTCACCTCC
CTCTTCTCCACCTCCCTCTTTTCCACCTCCCTCTTTTCAAACTCCCTCTT
CTCCACCTCCCTCTTCTCCTTCTCCCTCTTCTCCACCTCCCTCTTCTCCA
CCTCTCTCTTCTCCACCTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCC
CTCTTCTCCACCTCCCTCTTTTCCACCTCCCTCTTTTCAAACTCCCTCTT
CTCCACCTCCCTCTTCTCCTTCTCCCTCTTCTCCTTCTCCCTCTTCTCCA
CCTCCCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCT
CTCTTCTTCACCTCCCTCTTCTTCACCTCCCTCTTCTCCACCTCCCTCTT
TTCCACCTCCCTCTTTTCCACCTCCCTCTTTTCAAACTCCCTCTTCTCCT
TCTCCCTCTTCTCCTTCTCCCTCTTCTCCACTTCCCTCTTCTCCACCACC
CTCTTCTCCAACTCTCTCTTCTCCACCTCCCTCTTCTCCACCACCCTCTT
CTCCAACTCTCTCTTCTCCACCTCCCTCTTCTCCGCCACCCTCTTCTCCT
TCTCCCTCTTTTCAAACTCCCTCTTCTCCTTTTCTCTCTTCTCCACCTCC
CTCTTCTCCACCTCTCTCTTCTCAAACTCTCTCTTCTCCACCTCTCCTTT
CTCCACAGCCTTCTTCTCCACAGCCTTTTTCTCCACCTCCCTCTTCTCGA
ACTTCCTCTTCTCCTTCTCCCTCTTCTCCTTCTCCCTCTTCTCCAATTCC
ATCTTCTTAAACTTCCTCATCTCCACCACCCTTTTCTCCTTCTCCCTCTT
CTCCACATCCCTCTTCTTCACCTCTCTCTTCTCTACCTCCCTCTTCTCCA
CTTTCGCTCTTCCCCAATTCCTTCTTCTCCACCTCCCTCTTCCTTGCTCA
CCTTTCTATATCTATAACCACTTGCAAACAAATTTTCATCCCTTTCTATA
ATGGTGCTGTAGGTGTGATGccttctaaaattttagaatgttGATAGCTC
TGACagtcactttttttcttctcaTTTCAGTGATGGTATTGTCTGTCCCT
TCGACCGTCAACCGATTGAGGTAAAGATTctatattttgtttgtttttga
attaaaaaacgGATCAATTGACCTTCTTTACTTAAAATCCAATAAATTTC
CTTCGCTCCGGACTTAATTtaataacaaaatatttctagattttcaaaGA
TATCGGAAGGGAACGTGAAATTCTTGAAATGAAGGTCTACTGTAAAAATC
GTCCACAATGCAGTTGGCAATCAGAACTCCGATATTTCGAGGTACCACTa
tcatttgtaacttttttcttctgattGATGGTAAATTTCACAGAAGTCAC
CAGTAGCCTTCTAAGGATATTGTAGAAGGAATTAAAACCTCCTTAGGGGG
TTCAgaatttgttgtttttagtggttctttgatgattttgaaGGGGTATT
TATTAGTACGTCGCTCACAATTTCTTACAGGATCATATGAAGGAGTGTCT
GTTCGAAACGATCGATTGTGATATGAATTGTGGTATCAAAGTTCTACGGT
CAGATGTAAGGTTTTATTGTATTGATCCTGAAATCATGTACGTGTTCTGT
CTTTGGTATAGGTTTGTAGATTTCAGAGAATCATTGACCATTCCCatagt
tcggaccccccccccttccctaagggggggatgacaccttccaaaaaaag
tgaagaaggggggggtcagagattttcactaaaaaggggGGGNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNTATATATAAACATTGCATGGGGAATACTTCT
GTCAACATGTATAATGTGTCAACTATTTTAATGTCAACTATATTTTACTG
TTTCAgaccccccccctttcttaaggggggggatgacaccttccaaaaaa
gttaagaagggggggtcagagattttcactaaaaaggggGGGATAGTAAG
AAGGGGGGggtcgtttaagaaggggggcttacatatattgtagattattt
tccagcactgttatgaaatttggtctacatgaaaggaagttctttatttt
cNCAAACTCCCTCTTCTCCACCTCCCTCTTCTCCTTCTCCCTCTTCTCCA
CCTCCCTCTTCTCCACCTCTCTCTTCTCCACCTCTCTCTTCTCCACCTCC
CTCTTCTCCACCTCCCTCTTCTCCACCTCCCTCTTTTCCACCTCCCTCTT
TTCAAACTCCCTCTTCTCCACCTCCCTCTTCTCCTTCTCCCTCTTCTCCT
TCTCCCTCTTCTCCACCTCCCTCTTCTCCACCTCCCTCTTCTCCACCTCT
CTCTTCTCCACCTCTCTCTTCTTCACCTCCCTCTTCTTCACCTCCCTCTT
CTCCACCTCCCTCTTTTCCACCTCCCTCTTTTCCACCTCCCTCTTTTCAA
ACTCCCTCTTCTCCTTCTCCCTCTTCTCCTTCTCCCTCTTCTCCACCTCC
CTCTTCTCCACCACCCTCTTCTCCAACTCTCTCTTCTCCACCTCCCTCTT
CTCCGCCACCCTCTTCTCCTTCTCCCTCTTTTCAAACTCCCTCTTCTCCT
TTTCTCTCTTCTCCACCTCCCTCTTCTCCACCTCTCTCTTCTCAAACTCT
CTCTTCTCCACCTCTCCTTTCTCCACAGCCTTCTTCTCCACAGCCTTTTT
CTCCACCTCCCTCTTCTCGAACTTCCTCTTCTCCTTCTCCCTCTTCTCCT
TCTCCCTCTTCTCCAATTCCATCTTCTTAAACTTCCTCATCTCCACCACC
CTTTTCTCCTTCTCCCTCTTCTCCACATCCCTCTTCTTCACCTCTCTCTT
CTCTACCTCCCTCTTCTCCACTTTCGCTCTTCCCCAATTCCTTCTTCTCC
ACCTCCCTCTTCCTTGCTCACCTTTCTATATCTATAACCACTTGCAAACA
AATTTTCATCCCTTTCTATAATGGTGCTGTAGGTGTGATGccttctaaaa
ttttagaatgttGATAGCTCTGACagtcactttttttcttctcaTTTCAG
TGATGGTATTGTCTGTCCCTTCGACCGTCAACCGATTGAGGTAAAGATTc
tatattttgtttgtttttgaattaaaaaacgGATCAATTGACCTTCTTTA
CTTAAAATCCAATAAATTTCCTTCGCTCCGGACTTAATTtaataacaaaa
tatttctagattttcaaaGATATCGGAAGGGAACGTGAAATTCTTGAAAT
GAAGGTCTACTGTAAAAATCGTCCACAATGCAGTTGGCAATCAGAACTCC
GATATTTCGAGGTACCACTatcatttgtaacttttttcttctgattGATG
GTAAATTTCACAGAAGTCACCAGTAGCCTTCTAAGGATATTGTAGAAGGA
ATTAAAACCTCCTTAGGGGGTTCAgaatttgttgtttttagtggttcttt
gatgattttgaaGGGGTATTTATTAGTACGTCGCTCACAATTTCTTACAG
GATCATATGAAGGAGTGTCTGTTCGAAACGATCGATTGTGATATGAATTG
TGGTATCAAAGTTCTACGGTCAGATGTAAGGTTTTATTGTATTGATCCTG
AAATCATGTACGTGTTCTGTCTTTGGTATAGGTTTGTAGATTTCAGAGAA
TCATTGACCATTCCCATAGTTCGGACCCNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTAAagaa
ggggggcttacatatattgtagattattttccagcactgttatgaaattt
ggtctacatgaaaggaagttctttattttctctaaaatttggtattatat
ttgccagacttaatttttctttactgtttcccttccctttttaccataaa
aaatttagcccgaaacccttgggggataggcatttttaaaggttgagggg
gatgccaagaaggggggatcatttaagaaggggggggataaattttgttt
tgatagaaAAAGGGAGGTACAATTTTGGGTTATTGTATGGATTTCCTCAA
GACAATAAAGCGTGGCTTTGATCTTTTAGTTTAGGATCATTTCCTTTTTA
GATGAGAAATCATTTGGAAAATGATTGCCTGGTGGAATTTCCTTGTCAAT
ATCAATCGATCGGATGTCTATTCACTGTAAGTTTTCTCTAGGTTTAGAGG
TCTAATTCGAGACGAAAATGGTTCCCAAACACTATTGTGTGGACACCAAT
AATTTGAAACGTCACCAAGCAAGAAGTTACAAATCAAAGCAGATCAAAAC
CGtttttatacacccctgtcgcacagccccggtggaacttttttcctcag
tgaggataaaaattcttatcaaaatcataaatggggatggaaattctatt
gttccaaggttaaaaaacccaaTGGGGAtgtttttggagtgcaattttta
aacatggaatttcgagttgggatgaaatcaaggtcgatttcccagtgggg
ctgaaattcaagggtattttccaaCCGGGGAGGAaattttgcttaatttt
ccGGTGGGGCTGGTGTTCCAGCGGGTCTGtgcgacacaggggtgttttta
ttGGAATGGAATTGCTGCGTTCTATTGATCCGAAACGTTTAAAAAACCAG
TATGAACACTTTCTATCCGTAACAAAAACCATACCGAAGCTATGctaacc
gtaacgtctgaacatgttcttaaattgtGTGGAAAGATATTCACAtcatg
tttatttttttcagggCTCAAAAAGATCTTTAACGGAGCACATGGTCCTA
TCAACCAATCAACATCTCTTGTTCCAAATGCAGCATGAAGTGAGAAAGGT
CAAGCAAGATTTCGATGAAAAATTGAAGGCTAAAGATTTGCAATTAAGGA
TTCTTGGTGAACGCTTGAAGACAGTTGAAGGTGAAATTGTCGTATTGaga
aatgaaaagaagaagatgTCAGCTGAAATCAAAACCAAAAACGACAAGAT
GAATCAATTGGACGCAAAGTTAATAGAATTGGAGGATCTGGTTGAGGATA
ACCAACTCAAAAATTATAACAAACTTGGGGATATGGCGAAAGCAATAGAC
ggtttgaaagttgaaaatcaaaaagctGTAGCGAAAATAGATACCTTTTC
ACATccattcattttgaaaattgataattttgacGAACAATTTAAACAAG
CGAAAACCCAAAATAATATAATCAGATCACGACCATTCCTTTGTTTGGGC
CAATACAAGGGGCAATTGAAGCTATATTTAAATGGCAATAGTAATGGGAT
AGGCACTcatatatcaatatttttttgtcttaTTGAAGGGCCTCTTGATG
ACATGATTGAATGGCCAATGAAATGGAAGAAATGCACAATTGAACTGATC
ATAAATGACACAGTCATAGGGTCACATATATTGAGGGGCGTAAACGAGAA
TTTCAAGAACTTTAAACGTCCGacttttgctgaaaatgaaACCGGAAAAC
GAGGACCATCGAAATTTGTTGACCATAAAGATATACCCCATATCATTCGA
GATGATATAGTaacgatcaaatttgaaattcattagATGGACTGTGAACT
TGGGATATTTTTCGAGTCCCAATTATTATTGATAGAAAGTTGCTGAATTT
TCTAGATTGAATTATTCTAAACGATAGGCTTATTTCTATTGACCCGTAAA
AGTCTGTTTCAAGAAAATTAGCGGTCCATACAGTTTTAAACAGTACTCTC
GAtggaaaataaaatataataatttaaaCTCTGTCTATTACCGTGATATG
GGTGCTATATGATAATTCGAAATTGCTACGGGGtaatatcagtttgtata
aactaaaatttatcCTACTTTTGCTAATTTTCTGTCTGAATGAGTCGTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012629XLOC_012629Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022527-exon-sc0000424-1491911889:224081..224362TCONS_00022527-exon-sc0000424-1491911889:224081..224362Clytia hemisphaericaexon
TCONS_00022527-exon-sc0000424-1510915933:224081..224362TCONS_00022527-exon-sc0000424-1510915933:224081..224362Clytia hemisphaericaexon
TCONS_00022527-exon-sc0000424-1575043694:224081..224362TCONS_00022527-exon-sc0000424-1575043694:224081..224362Clytia hemisphaericaexon
TCONS_00022527-exon-sc0000424-1491911889:227661..227700TCONS_00022527-exon-sc0000424-1491911889:227661..227700Clytia hemisphaericaexon
TCONS_00022527-exon-sc0000424-1510915933:227661..227700TCONS_00022527-exon-sc0000424-1510915933:227661..227700Clytia hemisphaericaexon
TCONS_00022527-exon-sc0000424-1575043694:227661..227700TCONS_00022527-exon-sc0000424-1575043694:227661..227700Clytia hemisphaericaexon
TCONS_00022527-exon-sc0000424-1491911889:229990..230091TCONS_00022527-exon-sc0000424-1491911889:229990..230091Clytia hemisphaericaexon
TCONS_00022527-exon-sc0000424-1510915933:229990..230091TCONS_00022527-exon-sc0000424-1510915933:229990..230091Clytia hemisphaericaexon
TCONS_00022527-exon-sc0000424-1575043694:229990..230091TCONS_00022527-exon-sc0000424-1575043694:229990..230091Clytia hemisphaericaexon
TCONS_00022527-exon-sc0000424-1491911889:230281..230355TCONS_00022527-exon-sc0000424-1491911889:230281..230355Clytia hemisphaericaexon
TCONS_00022527-exon-sc0000424-1510915933:230281..230355TCONS_00022527-exon-sc0000424-1510915933:230281..230355Clytia hemisphaericaexon
TCONS_00022527-exon-sc0000424-1575043694:230281..230355TCONS_00022527-exon-sc0000424-1575043694:230281..230355Clytia hemisphaericaexon
TCONS_00022527-exon-sc0000424-1491911889:231282..231356TCONS_00022527-exon-sc0000424-1491911889:231282..231356Clytia hemisphaericaexon
TCONS_00022527-exon-sc0000424-1510915933:231282..231356TCONS_00022527-exon-sc0000424-1510915933:231282..231356Clytia hemisphaericaexon
TCONS_00022527-exon-sc0000424-1575043694:231282..231356TCONS_00022527-exon-sc0000424-1575043694:231282..231356Clytia hemisphaericaexon
TCONS_00022527-exon-sc0000424-1491911889:231945..232281TCONS_00022527-exon-sc0000424-1491911889:231945..232281Clytia hemisphaericaexon
TCONS_00022527-exon-sc0000424-1510915933:231945..232281TCONS_00022527-exon-sc0000424-1510915933:231945..232281Clytia hemisphaericaexon
TCONS_00022527-exon-sc0000424-1575043694:231945..232281TCONS_00022527-exon-sc0000424-1575043694:231945..232281Clytia hemisphaericaexon
TCONS_00022527-exon-sc0000424-1491911889:232519..233080TCONS_00022527-exon-sc0000424-1491911889:232519..233080Clytia hemisphaericaexon
TCONS_00022527-exon-sc0000424-1510915933:232519..233080TCONS_00022527-exon-sc0000424-1510915933:232519..233080Clytia hemisphaericaexon
TCONS_00022527-exon-sc0000424-1575043694:232519..233080TCONS_00022527-exon-sc0000424-1575043694:232519..233080Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000424supercontigsc0000424:224081..233080 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	9.5446e-07	0	1.36957	0	0.308429	1.08558	0.236436	2.61235	2.11911	3.69811	3.4968e-07	2.71142	1.02636	7.66031	3.62094	4.11726	4.88859	8.29936	2.8851	2.78571e-10	1.30446	0.720798	3.9135	2.22057	3.26173	2.49513	0.997219	0	3.94904
Blast
[Close]
BLAST of TCONS_00022527 vs. Swiss-Prot (Human)
Match: TRAF5 (TNF receptor-associated factor 5 OS=Homo sapiens GN=TRAF5 PE=1 SV=2)

HSP 1 Score: 98.2117 bits (243), Expect = 9.833e-22
Identity = 87/331 (26.28%), Postives = 142/331 (42.90%), Query Frame = 2 
Query:  143 VEFVEENIKLEGITCVICSLVMRSPIQAHKCGHRFCAKCIEKYHETSDGIVCPFDRQPI---EIFKDIGREREILEMKVYCKNRPQCSWQSELRYFEDHMKECLFETIDC-DMNCGIKVLRSDMRNHLENDCLV--------------------------EFP-----------------------------CQYQSIGCLFTGSKRSLTEHMVLSTNQHLLFQMQHEVRKVKQ--DFDEKLKAKDLQLRILGERLKTVEGEIVVLRNEKKKMSAEIKTKN--------------DKMNQLDAKLIELEDLVEDNQLKNYNKLGDMAKAID 910
            VE +EE  K     C  C  V+ +P Q   CGHRFC  CI    E +   +CP D++ I   E+FKD   +RE+L + VYC N P C+ +  L  ++DH+++CLF+ + C +  C   VLR D++ HL   C                            E+P                             C ++  GC  T  +R+L +H   +  +H+   ++  V+  +Q  D  + L+ K+ +++ L E +K +E E         K  A++  KN              DK   L+A++ +L  +V  NQ +N   L  + +A+D
Sbjct:   36 VERLEERYK-----CAFCHSVLHNPHQT-GCGHRFCQHCILSLRELNTVPICPVDKEVIKSQEVFKDNCCKREVLNLYVYCSNAPGCNAKVILGRYQDHLQQCLFQPVQCSNEKCREPVLRKDLKEHLSASCQFRKEKCLYCKKDVVVINLQNHEENLCPEYPVFCPNNCAKIILKTEVDEHLAVCPEAEQDCPFKHYGCAVTDKRRNLQQHEHSALREHMRLVLEKNVQLEEQISDLHKSLEQKESKIQQLAETIKKLEKEF--------KQFAQLFGKNGSFLPNIQVFASHIDKSAWLEAQVHQLLQMV--NQQQNKFDLRPLMEAVD 350
The following BLAST results are available for this feature:
BLAST of TCONS_00022527 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TRAF59.833e-2226.28TNF receptor-associated factor 5 OS=Homo sapiens G... [more]
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