TCONS_00022374 (transcript) - C. hemisphaerica

Overview
NameTCONS_00022374
Unique NameTCONS_00022374
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length688

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00022374 ID=TCONS_00022374|Name=TCONS_00022374|organism=Clytia hemisphaerica|type=transcript|length=688bp
TTTTGCAAGAGCGaggattttgaaatgaaaacatgAGACATTTAAACACG
CATTTTTGACGCATGCGCGCAGCTTGTCCCAATCTGTGCAAAGATCATCA
AGTAGCTTTGCGTGCGCGAAACCGCTGAGAAACTCGTTTCCCGTCTTTCT
TCGATCGCCGAGAAACACGCAAGTGCTTTGGCGCCTCACGAACATTGTTG
CTGCCGTGTGCGCGCCGGGTCAAAGTGACTGGTCTTCAATTTAGATACTG
CACATGTTTACTCCCGAATGGAACGAATGACGACCTTTTAAAAATGGCAG
GCAAGACACGCTAAGAGAATTTGAGAACAAAAATctgaaatattctgaaa
aacgacagaaaaaaagaaaaaaagtcagccATGAGTGGTGGTGGAACTCA
AGAAAAACTCACTCGTGTTGCCATTGTTAATACAGATAGATGTAAACCAA
AGAAATGCCGCCAAGAATGCAAGAGATCATGTCCCGTTGTAAGACAAGga
aAACTATGTATTGAAGTTGTACCAACATCAAAAGTTGCTTTCTTGTCTGA
GCATTTGTGTATTGGTTGTGGTATCTGTGTAAagAAATGTCCATTTGAGG
CTATCACGATCATCAATTTACCAAGTAATTTAGAAACGCAAACAACACAT
AGATATAGCGCAAATTCATTCAAATTACACAGGTNGTC
Run BLAST on NCBI

protein sequence of TCONS_00022374-protein

>TCONS_00022374-protein ID=TCONS_00022374-protein|Name=TCONS_00022374-protein|organism=Clytia hemisphaerica|type=polypeptide|length=102bp
MSGGGTQEKLTRVAIVNTDRCKPKKCRQECKRSCPVVRQGKLCIEVVPTS
KVAFLSEHLCIGCGICVKKCPFEAITIINLPSNLETQTTHRYSANSFKLH
RX
Run BLAST on NCBI

transcript from alignment at sc0000414:172804..183748+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00022374 ID=TCONS_00022374|Name=TCONS_00022374|organism=Clytia hemisphaerica|type=transcript|length=10945bp|location=Sequence derived from alignment at sc0000414:172804..183748+ (Clytia hemisphaerica)
TTTTGCAAGAGCGaggattttgaaatgaaaacatgAGACATTTAAACACG
CATTTTTGACGCATGCGCGCAGCTTGTCCCAATCTGTGCAAAGATCATCA
AGTAGCTTTGCGTGCGCGAAACCGCTGAGAAACTCGTTTCCCGTCTTTCT
TCGATCGCCGAGAAACACGCAAGTGCTTTGGCGCCTCACGAACATTGTTG
CTGCCGTGTGCGCGCCGGGTCAAAGTGACTGGTCTTCAATTTAGATACTG
CACATGTTTACTCCCGAATGGAACGAATGACGACCTTTTAAAAATGGCAG
GCAAGACACGCTAAGAGAATTTGAGAACAAAAATctgaaatattctgaaa
aacgacagaaaaaaagaaaaaaagtcagccATGAGTGGTGGTGGAACTCA
AGAAAAACTCACTCGTGTTGCCATTGTTAATACAGATAGATGTAAACCAA
AGAAATGCCGCCAAGAATGCAAGAGATCATGTCCCGTTGTAAGACAAGGT
ATGAAAAAATGTTCCTGTATTATTGGACTTCTCCCAGAGCCCAGGCAGAG
CCTGGGAATACATTCTAATTGTACCCTTAGCCACCTGCAGGAATAACATT
TTAACTACACGCTTATTGTTATACACCCGTGCGTAAGAGtgatattgggc
cattccagattATATTTGTTTTACCCCCCATCGGACGATGCGAcgtgcat
ttttttatttttcctagcctcagaaataattttttttctccagcaCGCAG
TGGTGGTTGGAAATTCCGATAAAATTCCATGTACTTTCGCAAAATGtgtc
ggaaattccactctttgttgccttttttaattcaattgccatGGAAATAA
ATGCAtaatacattttcttctctgcTCTCgctttggaaattttgaatttt
ggtgaaaacttttgccctcggaaatcctgtgttgtTTTCCGCCCCCCtct
tacagacaaattctggaatagacctttttgcctttccatattgaattgta
tgcaaaaattatggtcagttagggaaaccatccagggcAGGATCCTGCAA
TTCTATTAGcaagcaaaaactaaatgacacttgtaaacttaagtttctta
ccattttccatcaaaaacaaaaaaaaacattgctacttcccaaagccgga
gaccaaaacaaattatcttccaagattatggtgCCTTTTTGGATCTCTTG
TTAAGGCCATCAAAATGGTGGAAAGtgttgcggaaagacaaagcCGCCCG
CTGCTTTGAGGgaggtaacgccaaaacgcccaatatgatcttccaacaga
aggcaagTTAGTTGCCGTGCGAGTTatgtcatgcactccaccgcagccac
aacgaagcgtgtttcaacgaatatcattaattataagaaccttcagtaaa
ctttgagtgcttcattgaaaatgaagaaggtaagaagataaaaaatgcgc
tggataattttcattgtaacagtttggtcaatcatcgctgaaagtttgaa
aaaagtttttccgacacaaaaaaaaaaattcagccaattaaaagcacagt
gtgctaatacttactatgtttgctagatcgtctaggctaaaaaaagtgcc
aaaagacacgaacgccattttttaatgagtgatgctatgatttttttgat
tgcgacTGCGTACAGGATCTcaccaaatgttcctaactgatggtggccga
attgccgtggtgaaattcccttagaaagtatgcaaaaagaaagtgtaATA
AGACTTACATGCatagtttgcaatatatttatTAAGTGTAATCTTggaga
agaaagattaaatttgcttcttttgaaaactagaaataatcaaattcgct
cGTCTCCTAaaaacaagcacttcaaaaaaccataacattagacataaact
caagctgaaaaatcacccactaaggtacaaaaataatccttattctgCTG
acagtaaattattctcctgggaatagaaccgccaaacgatcaaatcaaaa
cattgatctgaacccgctgaatgtgtgatgttataattactgctttcagt
ttgcattatttgaaattttaatgtcatgaaaacagaatatgcaatgtctt
taagaacaaatttctaaaaggcttttgttgttctgtaaatatttcttttt
ggatcaagaaattccatcttttattgttctaatgattataatatttgttt
ataagatgctttgttgtctttttaatctttgtgtaaaattgcatatattt
tgcatacttttcaactaaatccaaccacagcACTCCAATCCCGAAATCTT
TTTTGTGTGAAAttattatacatgtttttttttaagaaacacacttttaa
gaaacatgaggctcagaatgcctaaaaactaagaaacatctaagaaacat
gcacCAGGCTACCTTTTCAAACAactacaaaaaatacaaaatgccGCTGC
CAGCTTTGTAAGAAAGAGTTATTCGCGGGAAACTGATGTCATCGCTATGA
AATGGCTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCATAAGCT
TTTGTTTTACATATACTGACACTCAATCTCTAGTTTCTCGTATGCGATAT
CTCCCATAATCACTTAATGACGAACTGCTTAATATTCCACTTTTATATTG
CAATACCCGtattagtcaggtagaattagcctgagacctggacaaaattg
ccatcaagctgaaaattggcacagatgttctttagggtatactgagttac
caaaaaaaaagccccaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGACATGTCCGGAAAA
TAtgtccgaaaaaaaagttgttcaaatatacaagtattatatatcaaaag
aaagataatttcaagacGAACAAAAAATTTGCTTACAAAAGGTCATGAAA
ATAAACACAGAAAGAGTTGTGAGTATCAGAAAAGACCCTACTGTCcaact
atttttgaattatgtagTAGTATTCCCTATTCTCAATGGCAGCGAATCTC
CTTACAGCTTCAAGCCATGTGTTTTTAGACCAGCTCCTGAGTACCGGCTA
GCGCCAACCTAGAGGGGTAGTAACTTTATATACGATTTTTGTGCTCCTCA
ACATCCAGTTTATGGAATGAAGAGATAAATAGCATTTTAAGGGGGCTTTT
GAATTTAGGGGGTCCTAAAAGAGCTCGGGTAAGGAATTANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAATTACAcgctttaaa
atattcaaaagtttaacaaaaacatagaaaacgttGGACTTAATCGAAAT
CGCTAAGAAAATTAAGGTTACGTTGTCATTAGTGGCAATTTTCAacgttt
cagggggtaaaaatgctattttttgctaTATTTCGCCTATTTTGCTTACC
TAAGCTAGTTGGAGAGCTCAAGAATGCTCACAAATCTCATAGAAGTGTGG
ATAATATtgaacttcaaaacttttgcctatttttcaccaattttgctTAC
CTAACTTAGCTAGTTTAAAAACCTCAATAGAAGTGCGGCCAATGTAAAAA
TCATATAAATCTCAACCAGGATGTGGCATTGTTGCTAgcactttttgact
tttcaggGGGTAATAATGCGCACATCATCTTTTTTCGCCTATATTGGCTA
CATAACTTAATTGAATAATGAAGAGTTCAAATATGTTCAAAATCCTGGAC
AGAAGTGAGGAAGGTTTGACCAATATAAAACTCGTACTACAATTTCACGA
CATATTTATTTGCACTTTTTGGCATCTCAGGGGGCAAAATTCGGGGCATT
CTCCGACCTCCATgttgtaccctgagtatcaacTTCAGGACGACCaagta
tagaaattttatcgcgcatgtgtcaatctaatcactatagagagaatcaa
agatgaagagcaaatattgccgtattaatgtctagcagattgTATCAGTA
TGCATGCTTACTATTGCCGAAttcccccagaaacctccaagtttaatttt
ttgaaatgtgtTTCGTTCAAAAGAAATCCTCTACATCattccaaatgtat
aacagtaattgcactaaacttttaattatactttaatggaatcgaaataa
tgcgcagatctttatgttatcattctctatcactgactcttttttaaaAG
CGTCGATGATATTTTTGAGATANNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNTGATCGAGGTGATGTTTTGGTGTCAGTATTCCCTCTA
CCGGTAAGTAGGTACCTCCAACATTGAACAtattatctgtttttttttct
cacgttCGCTAATTTCGTTGTCTGGTCATTTATTTTCAGCAATTCTTTCT
TAATGATATAAAGATCTAGGTTATTTTTAATGACCTGCACGAGTTCAACA
CGATGTTTgttgaactgaaaaaaaatgTGTCATCATGGTAATTACTCTTA
CAAGaatatgatttatttatttgttacgATATGCACTTGTATTAATAGAC
CATGGCTGCATTCGAATGCGACCCGAAAGCTTGGCTATCAACCCAGAGGT
GGGGGaaggtgccactctttctccctggactACTCCACTTACCCTTTATC
TTTTTCTCTAATACTGAGCATTAAGCAGTGAGTATCAAGTACAAATGACC
TCGCGCATCGTAGCCAAGTATTCCATATTTACACTATGGTTCGGTTCAAC
GTTTTGTTTTCAGGGTTCGCAATTGACCGTATAGCAAGTTGATCTTTATC
GGGCGGAAAAGTTGGGTCCAAATTAATTATTTCATGTCTAAGGAACTGTA
TCGTACGGGTTGTtcgacaatatatcctccaagCAGATCTCTGGGAAATT
TCTTCTAACGgactttttttgctttaatgCTTAGGTCGTAAGGTGTTGTT
TTACATTGCTCCTCATTACTAAGTCTTAGCGATTGTGGCGGTCAAAGCTG
TTTCGAATGACGAATGACGATGCGCTCTCGAACTAAGTTAAGTGAACAAA
ATAGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCTTACCCAAGCTCTTTTAAGACCCCCTAATTCAAAAGTC
CCCTTAAAACGCTATTTTACTCTTCATTCCATAAACTGGATGTTGAGCAG
CACGAAAATCGTTTATAAAGTTACTACCCCTCTAGGTTGGCGCTACCCGG
CACTCAGGAGCTGGTCTAAGAACACTTGGCTTAAAGCTGTAAGGAGATTC
GCTGCCATTGAGAATAGGGAATACTActacataattcaaaaataattgga
CAGCAGGGTTTTTTGTGATACTCCTAACTTTTTCTGTGTTTATTTCCATG
ACTTCTTGTAAGCAAATTTTTTGTTCgtcttgaaattatctttcttttga
tatataatacttGTATATTTGAACAACTTTTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTGGTAACTCA
GTATACCCTAAAGaacatctgtgccaattttcagcttgatggcaattttg
tccgggttgtggtgaaatttcaactaattctacctgactatatTAGTTTG
TTAATAAGTCACAATTCTAGATTCATTATAATCTCTAGTCTCTAGCACAA
GCCATATTATTACGTCAGTAAGCAATCATGTttcttaatttcattaaaat
tttaaaccaaattgaaatttatttttatatacaaTGATATGTTCATAGGC
ACTGGTACAGACCCCTTCGCACTCGTATTTAGTATCTATTCCATATGTCT
ATTCAGTTCTTCGTTCACTTttctaccgggtgtgccacaaaaaagtttct
ctctttaaaagtaattttctcgaaatctaaaaattttaaaagaaccattc
ctattttattggaaagaagaaaaataaacttaaatNTAGACTtagatttt
gatgggtcatttatcaaattcgatttattagatcaaaagttatgctcaat
tgaataaaaaagttacttttggaaagtgctcgaaaacgttaaaaatcgac
ctatcaaattattcagaaacataattacatgatatatcagtatttttgtt
tcagacattaaaaatgataattagctgtctaaatgaccttttgttattta
aaggaaggttgaatttcaatgaaaggaagaaaattcgtcgaaaaaggcca
aaaaatctggtagaattcataaaaatacatcaaatatgggtttcgaggta
gattcaGCCTTACATCATAGACttaatccagtctagaaccaaaaatctga
ggaaaatttcggtaaaactaaatcaaattaattttaatgaagattttgaa
ccctttcgacccttcagtttcaaaatttatgtgtttagttagtgaaaaat
gctcttaatcatgtaaaggctattgcgattgccaaatttaaagtaaaaat
ttgataggttgatttttaacgttttcgagcactttctgaaagtaacattt
ttattcaattggacataacttttgatctaatgaatcaaatttaataaatg
acccatcNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNc
ttctttccaatgaaataagaatggttcttttaaaatttttagatttcgag
aaaattagtttcaaagagagaaacttttttgtggcgcacccggtacatAG
TCTCAATTAGCTTAGTCTAACttaatttcatatttcatcATCTATTTCAT
TGGTGGTCTACCagtattatgtttttttttgttgttttttttaggtaatg
ttagttatttattttatgttcaccttaaaatattgaaaatgacaaACAGG
CCTTGCTATACCGGTTTTATCTTCGTTTGGCTGCATTCGAATTTATTTAC
TTCTGGTCGCGGGACTAGATGTCGTCCCAATTCTGAGTTAATCTTCGGCA
TACAATTACTAACACTCTACTTTGCTAGCGTAGCCGATCAGAGCATCTCA
CTAGTATAcataataattttataaatataaatatttttttctagactttg
cACACATAtgctatataatattttcagccgaagagccaaatgtaaatttt
ggagattgaaatataccattattattattatttatattattattattatt
attaaaaattGGCTAGTTCAAAATGCAGGTCAACAGGTTACAGGTCATTA
ACACAGGTCAGCTTTAATTActgtaaaatacaaaagaaaaatgtttgaaa
aacattgGCTATTGTCAAAAATATCATACTGAAGGCATGTCTAGAACCTT
ATTAAAGGTCAAAATTTATCCACAGGTCAAGATTTCCCTCTCTACTTTTA
CTTTCGCTTTTGTGCTACATGAATTGATTGGATGAACACgcctaacaaat
tctgattggctgaaagaAAGCCTTTAGCCTtgggattctgattggattat
TTCTTGATTATTTTACGGctgaattctgattggttgaaagtctATCTATA
TCTATTTTTTAAGTATTAAAAGGTCTGAGCTTGAATTCTAATaggatgaa
tacctgaaaagtaaacaatagtatgtaagtattttgcttatcaaaactaG
ACTTTTTTTCCACTCACGAACTGTAATTTCAGAATAGGATTTTTTGTGCG
ATATgctttttcttccatttttaaaatttttctgtttattttttgtGGAA
AAAACCTTCTATGCAACATCTTCATTTcattaaatgacatcatttcaaTA
ATTTGGTTTCAAGCGTTTGACGACACTCGGATGATCTCAATATCTTTTAG
CATGAAAGTTGTCAATAATCTAATACCCTTTCTTAACATATACCTAGGGA
CATGTTTTAAGCTTGTAATAGCTGAACTATTGATTGTGGTAACATGATTA
GAACAACGgttataaaaaaagtcaaaattcccCTATTCCTCTATNGCCCC
CTTTCTTAACATATACCTAGGGACATGTTTTAAGCTTGTAATAGCTGAAC
TATTGATTGTGGTAACATGATTAGAACAACGgttataaaaaaagtcaaaa
ttcccCTATTCCTCTATTCCTCTAAAGTTACTTTTAGTAGtgagattgaa
aaattttgataggCCTCTTTTCTGGAAAATCGGAGGAGTATCAGAATAAG
TTGAAATTCTTGAAGCTGCTTTAGAGTGGGTTGAAGGATAATGGAACCGT
TAATAAGTAAAGGATAGCAAAGATGGTTGATGCTAGNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGTAATAAATACTAATCTAGC
AAATCTCTAGAGACATATGATAGCAAATATAACACAATAAGAtataaaag
acaaagaaaacacTAATTGTCTGGAGAATATATCATATCTAAGAAATAAT
TGATCGTACAATGACTAATATAATTANTAGCAAAGATGGTTGATGCTAGG
GCTAGCAAGCTGTTTAGTGGGAAACTTGCtgacaacttttttttttaatt
taggaaAACTATGTATTGAAGTTGTACCAACATCAAAAGTTGCTTTCTTG
TCTGAGCATTTGTGTATTGGTTGTGGTATCTGTGTAAaggtttgttcttt
taaaatgtttccTTTTCATCTTTTATGCGCATTCTTATTGTTAGTCTTTA
TTTACATTAGCTTAACCTAAGATTAAAATCAACTTCGGCTTTGACTGTGT
ATTTTTCATCATATTTTAttattcaaaaagattattttcaaatcctaTCT
AAGGAAGTGTACTTAagaaagtaacttttcttcTGCTTTAGAAATGTCCA
TTTGAGGCTATCACGATCATCAATTTACCAAGTAATTTAGAAACGCAAAC
AACACATAGATATAGCGCAAATTCATTCAAATTACACAGGTNGTC

Coding sequence (CDS) from alignment at sc0000414:172804..183748+

>TCONS_00022374 ID=TCONS_00022374|Name=TCONS_00022374|organism=Clytia hemisphaerica|type=CDS|length=918bp|location=Sequence derived from alignment at sc0000414:172804..183748+ (Clytia hemisphaerica)
ATGAGTGGTGGTGGAACTCAAGAAAAACTCACTCGTGTTGCCATTGTTAA
TACAGATAGATGTAAACCAAAGAAATGCCGCCAAGAATGCAAGAGATCAT
GTCCCGTTGTAAGACAAGgaaAACTATGTATTGAAGTTGTACCAACATCA
AAAGTTGCTTTCTTGTCTGAGCATTTGTGTATTGGTTGTGGTATCTGTGT
AAagAAATGTCCATTTGAGGCTATCACGATCATCAATTTACCAAGTAATT
TAGAAACGCAAACAACACATAGATATAGCGCAAATTCATTCAAATTACAC
AGGTNGATGAGTGGTGGTGGAACTCAAGAAAAACTCACTCGTGTTGCCAT
TGTTAATACAGATAGATGTAAACCAAAGAAATGCCGCCAAGAATGCAAGA
GATCATGTCCCGTTGTAAGACAAGgaaAACTATGTATTGAAGTTGTACCA
ACATCAAAAGTTGCTTTCTTGTCTGAGCATTTGTGTATTGGTTGTGGTAT
CTGTGTAAagAAATGTCCATTTGAGGCTATCACGATCATCAATTTACCAA
GTAATTTAGAAACGCAAACAACACATAGATATAGCGCAAATTCATTCAAA
TTACACAGGTNGATGAGTGGTGGTGGAACTCAAGAAAAACTCACTCGTGT
TGCCATTGTTAATACAGATAGATGTAAACCAAAGAAATGCCGCCAAGAAT
GCAAGAGATCATGTCCCGTTGTAAGACAAGgaaAACTATGTATTGAAGTT
GTACCAACATCAAAAGTTGCTTTCTTGTCTGAGCATTTGTGTATTGGTTG
TGGTATCTGTGTAAagAAATGTCCATTTGAGGCTATCACGATCATCAATT
TACCAAGTAATTTAGAAACGCAAACAACACATAGATATAGCGCAAATTCA
TTCAAATTACACAGGTNG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_012552XLOC_012552Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022374-proteinTCONS_00022374-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00022374-exon-sc0000414-1491911889:172804..173301TCONS_00022374-exon-sc0000414-1491911889:172804..173301Clytia hemisphaericaexon
TCONS_00022374-exon-sc0000414-1510915933:172804..173301TCONS_00022374-exon-sc0000414-1510915933:172804..173301Clytia hemisphaericaexon
TCONS_00022374-exon-sc0000414-1575043694:172804..173301TCONS_00022374-exon-sc0000414-1575043694:172804..173301Clytia hemisphaericaexon
TCONS_00022374-exon-sc0000414-1491911889:183357..183442TCONS_00022374-exon-sc0000414-1491911889:183357..183442Clytia hemisphaericaexon
TCONS_00022374-exon-sc0000414-1510915933:183357..183442TCONS_00022374-exon-sc0000414-1510915933:183357..183442Clytia hemisphaericaexon
TCONS_00022374-exon-sc0000414-1575043694:183357..183442TCONS_00022374-exon-sc0000414-1575043694:183357..183442Clytia hemisphaericaexon
TCONS_00022374-exon-sc0000414-1491911889:183645..183748TCONS_00022374-exon-sc0000414-1491911889:183645..183748Clytia hemisphaericaexon
TCONS_00022374-exon-sc0000414-1510915933:183645..183748TCONS_00022374-exon-sc0000414-1510915933:183645..183748Clytia hemisphaericaexon
TCONS_00022374-exon-sc0000414-1575043694:183645..183748TCONS_00022374-exon-sc0000414-1575043694:183645..183748Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000414supercontigsc0000414:172804..183748 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
123.354	126.871	66.8961	52.5958	45.3918	40.3834	95.6498	102.773	150.773	129.871	169.011	197.469	194.72	194.578	190.252	189.425	152.546	194.93	96.6353	106.622	174.052	180.841	109.825	124.741	135.035	155.663	128.044	148.338	76.5442	80.3896
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR013283RLI1
IPR007209RNaseL-inhib_metal-bd_dom
IPR0178964Fe4S_Fe-S-bd
IPR0179004Fe4S_Fe_S_CS
Blast
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BLAST of TCONS_00022374 vs. Swiss-Prot (Human)
Match: ABCE1 (ATP-binding cassette sub-family E member 1 OS=Homo sapiens GN=ABCE1 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 7.057e-47
Identity = 73/94 (77.66%), Postives = 86/94 (91.49%), Query Frame = 3 
Query:  402 EKLTRVAIVNTDRCKPKKCRQECKRSCPVVRQGKLCIEVVPTSKVAFLSEHLCIGCGICVKKCPFEAITIINLPSNLETQTTHRYSANSFKLHR 683
            +KLTR+AIVN D+CKPKKCRQECK+SCPVVR GKLCIEV P SK+A++SE LCIGCGIC+KKCPF A++I+NLPSNLE +TTHRY AN+FKLHR
Sbjct:    3 DKLTRIAIVNHDKCKPKKCRQECKKSCPVVRMGKLCIEVTPQSKIAWISETLCIGCGICIKKCPFGALSIVNLPSNLEKETTHRYCANAFKLHR 96
The following BLAST results are available for this feature:
BLAST of TCONS_00022374 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ABCE17.057e-4777.66ATP-binding cassette sub-family E member 1 OS=Homo... [more]
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