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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00022096 ID=TCONS_00022096|Name=TCONS_00022096|organism=Clytia hemisphaerica|type=transcript|length=1505bp
CGCCGcttcattcttcaaaaagaaaTATCCAATCCATATAGAAATTTGAA
CCTGCTAGTAAAGCGTTGTTTTACATCATCTGTCACTCGGCTAGCATATA
GAGATGTTACCAAAGATCACCCGGTTATTGTTGGATCAAAACAACTCAGA
AAACTGTTACAGGAACATGTTGGTGCAAAGAAGTTTTGGCTTGAAAATAT
AACAGAACTGTCAAACATAGATGCAGAGAGGGCTAAAAAACAAGAAGATC
TTGTACCACGCTCAAGCAAAGATAGTGTACAAGAGGTTATTATTCCATTA
GGTTCAGACTTGGTTCAGCGTGAAAAAtacttaacattttacaatacAGT
GCGTTTTGGAAAACTCCTTGAAGATTTGGATACATTAGCTGGGTGGGTtg
gcttcaaatattttaaaggACCTACTGAAAGAGCTCCCTTCTCTTTGGTC
ACAGCATGCGTTGACAAAATTAACCTTCAAGAGAATACCATTTCTTCGAC
TGAGGATATTAAGTTAACAGGCTTTATATCATGGGCTGGAAGAACATCAC
TTGAGATTACAAGTTATGTTGATCAGTTTGACCCAGAAACAGGCACATGG
AAACGATTATCAGATGCAGTGTTTGTGATGGTTGCTAGAAGCTTGAAAGA
TGGTAGCGCTACTTTTGTAAACAAGTTTGTCCCAACGAATGataaagaga
agaaattttttgaacaaGGAGAACTGAATGTCATTGAGCGTAAACGAAAA
TCCGCTGAATCTTTATTCAAACAGGCACCTACTGCTGAGGAACGAAATCT
TATTCATCAAATGTTTTTAGGATCTCTTGATCCAAGCAAATCAACTTTTT
CTAGACGTGTCAAGCCTGATAATACAGTTTGGATGGAGTACACTAGACTA
AAAAATCTACTCATCTGTCATCCACAGGCTCGAAATCTCTACAATAAAAT
CTTTGGTGGTTTTCTCATGCGGGAGGCTTTTGAATTAGCCTGGGCAAACA
CTTGCACACACATCAAGTCAAGACCCACAGTCATTGCAATGGATGATGTA
ATGTTTCGAAAACCTGTAGAAGTTGGTTCTTTACTTTATCTATCCAGTGA
AATTGTATATTCAAAGGATACCTATCTATTGACACGTGTTCATGCTGAAG
TAGTTGACCCTAAAACTGGAGATATAGACACCACAAATGTGTTTTACTTT
CATTTCACAAGTAGGAACGAATTTCCACAAGTAGCACCTATGTCTTATGG
AGAGTATATGTTATACTTAGATGGTTTGAGGCATGCTAATGCACTTCGTA
TTCCAGAAGTTACAAACTAGCTTTCGTTATTTTATCGTAGTTGTGTTGCT
TCTGTTTGATTATTGGATATAGAAAATCATGTTCGAATTAGAAATTTACA
GAAATATCATAATTTTAATAGTTAAAAGATTTAAATTAAACATACACAAG
ATTCTTAGAATGTTATGGAATTCAAAATACTAATACAACATAGTTGTAAT
TGTAG Run BLAST on NCBI transcript from alignment at sc0000405:157858..165759+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00022096 ID=TCONS_00022096|Name=TCONS_00022096|organism=Clytia hemisphaerica|type=transcript|length=7902bp|location=Sequence derived from alignment at sc0000405:157858..165759+ (Clytia hemisphaerica)
CGCCGcttcattcttcaaaaagaaaTATCCAATGTatactttttccaatt
tttgttttgttttaattataaattgttgtttcatatttttatcCTTCCTC
CCTCTGTCTGTCTGTCTCTTTGcagtttgatttgaaaattttctgagCTG
CTCTCAGGCTGCTGAGAGGATGTTTTTTACATTGATTTCGTTATCTTGCT
GTTGTAGGTATTTTATTTGCAGTTTTTTATGTTTGATTAATGTGTGTGCA
TGGGCTTTATAGCCCTGActcttcatataaaatttatgGAAAACACATTT
GGCAGCAATTGTGAAAATATGTTGCGTTCGGGGTCGTCCGACCGactgtt
tatttacaagaaaacccGATTCAGAAAGTCGGTAAAATCGTCGGGTTTTT
TGGGCGCTGTTCCCAGGTTCAGATCTTTCCCATAATGGCGGGCACGGGCG
AACGGAGTAtgtctttgaatcattattCTTTGTCAgtcaggtgtttaaga
taaaaactgcaattattgctcttttcggaaattattgccgaaaacagcaa
tttttctAACGATGAAAtgttgaatattacccaggaatcagccattcgat
tgagatttgattacgttcgacaatcgaatcgcaattattcgattgcgttc
gattacgtttgattggttcgattgcgatttttttcaaagttgttcgattg
acaccgtctggacacTCAAAAGCAAAAAGGGTATATACCCttccttgccg
accgacgggggtgctccgctgaggttgaaaaatggaccctacatGGGACT
TGTATGGAACGCCATAGCTGCCATAAGTGCTCTTTTTATGTGCTCTTTTT
TCATTGAGAtgcgctcttttcattcgctcttttCTTTCGGTTCGCTCTTT
TATTCGCTCTTTTGGTTCGCTCATAGTCATACGCTCTTTTCGTTTGCTCA
TTTGCTCTTTTCGTTTGCTCATGTGCTCTTTTTGTTCGCTTATATGTGCT
CTTTTATTCGCTCTTTTGGTGCGCTCTTTTAATTCGCTCTTTTATTTGCT
CTTTATGTTCGCTAAATCATTCAGTTTGCTCTTTCTTTGCTCTTTTAATT
CATTGATGCACTCTtttattcgctcttttcatttgTTGGTGCGCTCCTTT
ATTTGCTCCTTTCATTCATTcactcttttcattcgctcttttATTCGCAC
ATACACTAGAGTTGAGCCCAGTGTGCTTTAGCACGTTACAGTTTCAATGC
GTCATatgtgtaaaaaccaggtgcGTTGCGCTAGAGGTCGCACAGCTTTG
GTGTGAGTTGTTTgattcaaatcctaccaagagGAGATCAACAACCTCGT
CCttgtgtattccaggctttgtttacgttactgattgacgccagagaata
ccctggtgttagCTGATGCAAGAGGAGAAACTTCTCAAAACTATATGtac
gtcataaaaaatctgacgtcaagttacactgcaatgcaatgCTTTCAAAT
CcaagaacaaatgaaatctgacattttgtttttgaattgcatAATCTTAC
ATGTTCGAAAAAATTGTTGCCCAAAAATTCTTCTTGCCTTGGGGCAATGA
AACTATTAATATTACTAATATTTCTCGAGCTTTGTctaaacattaaaaaa
gcaCGTGATgagcaaaacaaaaacataataGCTATTTACAGgatattttt
ttagaatttcctTTCGGATAATGATAATAAAAGAGCGCATCAATGAATTA
AAAGAGCAAATAAAAGAGCAAACGGAATGCGCGTTTAGCGAACGTAAAGA
GCGAATAAAAAAGCGAATTAAAAGAGCGCACCAAACGAGCGAATAAAAGA
GCACATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCAGTCTACAATTTAATCAATTGATCTTTCATCCTCT
TATATCTTTTCGATCTTTTAATCTATTATGTACACAATAACATAATGACA
AACTTCAATAGGCTGAGTAATGTTATATTATATTGTTTTTGAAGTTGCTA
CCCATATTATGTATGTTATGGTCTATGGATATGGCATGGCTATGGCTATG
GCTAAATAACAGATATATCTTGTAGGTTATATTGAAGTTATTTGTCTACT
CAGGTAAATTAATGCTTGTCCAAATTTTCGgtaatttttcctgttttttt
atGCCATTTGtagatgacgtcataaaacaaaaaaaatgatcTCAAGAACT
AGCTAACTAAACTTTgtgaaactttcagcaatgatatACATTTGTGAGTC
ATTTTGTGATCTTCTTTctcctttctatcaattttggactttttctttGT
ATCCTTGGTTGTTCTCGCTGGAATTTGGCTTTCACATTTTGTTCAAGAAG
ATTTTGTTACTCATTTCTAGGATTTCTTGTGATCATCATGCTTAGTTTGT
CATTTCAGTTAATTGGATTCAGATCATTTTTCAGTTCCTTCCTTTCAATT
TCatccaagaaaaaaaaaatgcattGAATTCTGAAAGAGGTTCTGGTTTG
CCATCATCATTTTGAAATCCCCACTAAAATTTATGTTTGTGACAGGATCC
AGGGCTAAAAGGGCAAGTTTTACACCTTTCAGTGGtgtttgaaaatcttt
tgctaTTGAGGAATTTCCCATCATTGCTCTTGTCCTTCGGTTATCTTTAC
ACTACTACTGTAGGATTGCTAAGTTTTTAGTGCTTGAGTATAACACGAAG
AAGTTCTCTTTCAAACTGGTTTTTTAAAGCTTTAGAGCTTTGACCTTTCT
CTTTACaaagaaaatatattattttgaaattaaccagccctttttcttta
aaagcctattttttcaaactttttaccTTTCGGCCTATTAGTTCATTGTA
ACCAAAACTCATCTGGGCACAGACCAATGTCTTTTGTCCTTTTAGGTGTC
ATCTAATAAACagggattttgaaaaatattcaaatttttagtcaaATAAT
AACTTACATACTTTTAATAACTTAAATGAACATCTAAAGACagccaaata
tattttgaaaaattaacaaatagAAGGCAATCATTTTAATCATCCAAGAC
TCTTGGACAGCTTGGGGATCGAGAATAGACTTACAGTATTAATGCAATTT
CTATATTTTGTAATATTCTACTGACATTCAACGTTTGAGTTTAGGTTGGC
CTCATTGGTATGATTTTGAAAGGTACAATAGCACTTAATTGTCACTTGAT
GCTTGATGCTTGAATAAAAAAAGAGAGTTGTTTTTGGTATTTAATCCCGT
TAATCTGGGTTAATCTGTTTCTTACCTTAAAACATGGCATATAAGTATAC
TATCTTGATaaataaatagttttatacattatatataattattttataaa
aCATTCTTTAACAAATAATTTTTGTCTCCTTAAAAAGATGTTTCAGCCAT
ATAGAAATTTGAACCTGCTAGTAAAGCGTTGTTTTACATCATCTGTCACT
CGGCTAGCATATAGAGATGTTACCAAAGATCACCCGGTTATTGTTGGATC
AAAACAACTCAGAAAACTGTTACAGGTGAAgagcttttttaaaacatatg
CTATTAAATATGAAAAGTCAAGCAAATGGTTTTGAGAatgtattttcaaa
gacaaattATAGAcgagttgttttttttatttactgtTGCTCTGCTTGGA
AATGGTGTTGTTGGAAATAATTGTTAGAGTTGATAAATATTTGGCTATTG
ACAGCTAGACATATTTTAAAGCTTGGTGCTCACTGAAaaataatacctta
agggaagaaatttttgcagaaagaaattttttgtggAACTTCATTTCGCT
GTTCACAGCTCGAAATTCTTCAGATATTCTTAACCTTTGAGTTTTTAAAG
CCTAAAATGtcctatttttttattttcgccattatgaaagtatttttgtc
cgttttcctaTGAAACTGGGTCTTTTATGGTCAGCAAAACCTTAAAAGGT
TCTTAActagttcttaatattttagccatcaattttatatagtttgttct
taaagaacGTGTATTTAATGTTATAGGAACATGTTGGTGCAAAGAAGTTT
TGGCTTGAAAATATAACAGAACTGTCAAACATAGATGCAGAGAGGGCTAA
AAAACAAGAAGATCTTGTACCACGCTCAAGCAAAGATAGTGTACAAGAGG
TTATTATTCCATTAGGTATGTGAGATCCTTTCCATCAAGGGACGCATCTT
GGTCTCTGATATTAAGACAAAACAAAGCAAAGGGGGTAGCTCAAAAATGT
GCTTAAAATCCAGATTGatctgtgaaaaaaaaattaaaaaatccaaaata
acCTCCTTAACATTGGGgtgaatttttcatataatAAGCTTTTAATTTCA
TAACACTACTATTTTAGTgcaagttttgttttgttttatattatttttgt
tattaataGAGTAAATTTAGTCATCCAATTTATTAAAGTTTTTAACTAGA
TGATGATTCAATCATATATTGATGATTTAGTATAATAATTTATAATTAAT
AAATTATGTATAATAATTTCACATAAAATCTTCACCTTGTTTTTTTAGGT
TCAGACTTGGTTCAGCGTGAAAAAtacttaacattttacaatacAGTGCG
TTTTGGAAAACTCCTTGAAGATTTGGATACATTAGCTGGGTGGGTtggct
tcaaatattttaaaggACCTACTGAAAGAGCTCCCTTCTCTTTGGTCACA
GCATGCGTTGACAAAATTAACCTTCAAGAGAATACCATTTCTTCGACTGA
GGATATTAAGTTAACAGGCTTTATATCATGGGCTGGAAGAACATCACTTG
AGATTACAAGTTATGTTGATCAGTTTGACCCAGAAACAGGCACATGGAAA
CGATTATCAGATGCAGTGTTTGTGATGGTTGCTAGAAGCTTGAAAGATGG
TAGCGCTACTTTTGTAAACAAGTTTGTCCCAACGAATGataaagagaaga
aattttttgaacaaGGAGAACTGAATGTCATTGAGCGTAAACGAAAATCC
GCTGAATCTTTATTCAAACAGGCACCTACTGCTGAGGAACGAAATCTTAT
TCATCAAATGTTTTTAGGATCTCTTGATCCAAGCAAATCAACTTTTTCTA
GACGTGTCAAGCCTGATAATACAGTTTGGATGGAGTACACTAGACTAAAA
AATCTACTCATCTGTCATCCACAGGCTCGAAATCTCTACAATAAAATCTT
TGGTGGTTTTCTCATGCGGGAGGCTTTTGAATTAGCCTGGGCAAACACTT
GCACACACATCAAGTCAAGACCCACAGTCATTGCAATGGATGATGTAATG
TTTCGAAAACCTGTAGAAGTTGGTTCTTTACTTTATCTATCCAGTGAAAT
TGTATATTCAAAGGATACCTATCTATTGACACGTGTTCATGCTGAAGTAG
TTGACCCTAAAACTGGAGATATAGACACCACAAATGTGTTTTACTTTCAT
TTCACAAGTAGGAACGAATTTCCACAAGTAGCACCTATGTCTTATGGAGA
GTATATGTTATACTTAGATGGTTTGAGGCATGCTAATGCACTTCGTATTC
CAGAAGTTACAAACTAGCTTTCGTTATTTTATCGTAGTTGTGTTGCTTCT
GTTTGATTATTGGATATAGAAAATCATGTTCGAATTAGAAATTTACAGAA
ATATCATAATTTTAATAGTTAAAAGATTTAAATTAAACATACACAAGATT
CTTAGAATGTTATGGAATTCAAAATACTAATACAACATAGTTGTAATTGT
AG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00022096-exon-sc0000405-1491911889:157858..157890 | TCONS_00022096-exon-sc0000405-1491911889:157858..157890 | Clytia hemisphaerica | exon |
| TCONS_00022096-exon-sc0000405-1510915933:157858..157890 | TCONS_00022096-exon-sc0000405-1510915933:157858..157890 | Clytia hemisphaerica | exon |
| TCONS_00022096-exon-sc0000405-1575043694:157858..157890 | TCONS_00022096-exon-sc0000405-1575043694:157858..157890 | Clytia hemisphaerica | exon |
| TCONS_00022096-exon-sc0000405-1491911889:163404..163532 | TCONS_00022096-exon-sc0000405-1491911889:163404..163532 | Clytia hemisphaerica | exon |
| TCONS_00022096-exon-sc0000405-1510915933:163404..163532 | TCONS_00022096-exon-sc0000405-1510915933:163404..163532 | Clytia hemisphaerica | exon |
| TCONS_00022096-exon-sc0000405-1575043694:163404..163532 | TCONS_00022096-exon-sc0000405-1575043694:163404..163532 | Clytia hemisphaerica | exon |
| TCONS_00022096-exon-sc0000405-1491911889:164034..164172 | TCONS_00022096-exon-sc0000405-1491911889:164034..164172 | Clytia hemisphaerica | exon |
| TCONS_00022096-exon-sc0000405-1510915933:164034..164172 | TCONS_00022096-exon-sc0000405-1510915933:164034..164172 | Clytia hemisphaerica | exon |
| TCONS_00022096-exon-sc0000405-1575043694:164034..164172 | TCONS_00022096-exon-sc0000405-1575043694:164034..164172 | Clytia hemisphaerica | exon |
| TCONS_00022096-exon-sc0000405-1491911889:164556..165759 | TCONS_00022096-exon-sc0000405-1491911889:164556..165759 | Clytia hemisphaerica | exon |
| TCONS_00022096-exon-sc0000405-1510915933:164556..165759 | TCONS_00022096-exon-sc0000405-1510915933:164556..165759 | Clytia hemisphaerica | exon |
| TCONS_00022096-exon-sc0000405-1575043694:164556..165759 | TCONS_00022096-exon-sc0000405-1575043694:164556..165759 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000405 | supercontig | sc0000405:157858..165759 + |
Blast
BLAST of TCONS_00022096 vs. Swiss-Prot (Human)
Match: ACOT9 (Acyl-coenzyme A thioesterase 9, mitochondrial OS=Homo sapiens GN=ACOT9 PE=1 SV=2) HSP 1 Score: 374.015 bits (959), Expect = 3.940e-124 Identity = 189/397 (47.61%), Postives = 265/397 (66.75%), Query Frame = 1
Query: 142 QLRKLLQEHVGAKKFWLENITELSN---IDAERAKKQEDLVPRSSKDSVQEVIIPLGSDLVQREKYLTFYNTVRFGKLLEDLDTLAGWVGFKYFKGPTER-APFSLVTACVDKINLQENTISSTEDIKLTGFISWAGRTSLEITS-----YVDQFDPETGTWKRLSDAVFVMVARSLKDGSATFVNKFVPTNDKEKKFFEQGELNVIERKRKSAESLFKQAPTAEERNLIHQMFLGSLDPSKSTFSRRVKPDNTVWMEYTRLKNLLICHPQARNLYNKIFGGFLMREAFELAWANTCTHIKSRPTVIAMDDVMFRKPVEVGSLLYLSSEIVYSKDTYLLTRVHAEVVDPKTGDIDTTNVFYFHFTSRNEFPQVAPMSYGEYMLYLDGLRHANALRIP 1305
++R L+E VGA W +++ + + + AK Q+ L PR KDS EV++PLGS+ REKYLT NTVRFG++LEDLD+L + + + K + + +P S+VTA VDKI++ + ++S +DIK +G +SW G+TS+E+ + D+F P + DA FVMVAR ++ FVN +P + +E++ F QGELN R S+ SL K AP+AEER IH+MFL +LDP +F RV P N VWME ++LK+L ICHPQ RN++N+IFGGFLMR+A+ELAWA C+ SRP V+A+DD+MF+KPVEVGSLL+LSS++ ++++ Y+ RVH+EV + TTNVF+F F S E P V P +YGE MLYLDG RH N++ P
Sbjct: 39 EVRDKLREIVGASTNWRDHVKAMEERKLLHSFLAKSQDGLPPRRMKDSYIEVLLPLGSEPELREKYLTVQNTVRFGRILEDLDSLGVLICYMHNKIHSAKMSPLSIVTALVDKIDMCKKSLSPEQDIKFSGHVSWVGKTSMEVKMQMFQLHGDEFCP-------VLDATFVMVARDSENKGPAFVNPLIPESPEEEELFRQGELNKGRRIAFSSTSLLKMAPSAEERTTIHEMFLSTLDPKTISFRSRVLPSNAVWMENSKLKSLEICHPQERNIFNRIFGGFLMRKAYELAWATACSFGGSRPFVVAVDDIMFQKPVEVGSLLFLSSQVCFTQNNYIQVRVHSEVASLQEKQHTTTNVFHFTFMSEKEVPLVFPKTYGESMLYLDGQRHFNSMSGP 428
The following BLAST results are available for this feature:
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