TCONS_00018932 (transcript) - C. hemisphaerica

Overview
NameTCONS_00018932
Unique NameTCONS_00018932
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2411

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00018932 ID=TCONS_00018932|Name=TCONS_00018932|organism=Clytia hemisphaerica|type=transcript|length=2411bp
GGATACTATTCATCTACTCTTGTTTATTATACGAAAGAGTAATATGTTTT
TGCCTTCCTTTGTCAATTTTCTTTACCTGGTACTCATTCTTTCTCATTTC
TTGTTTTTTAGTGTAGGtacataaaaaagaacaaaatgtcTTTGGCGGAT
GAATTATTAGCAGATCTTGATGACATTGAGGATGAAGAGGTTACAGCCAA
TGTTGAGGATGATGGTGATATCCAGGAGATTATGGAGACAGATGATCTCC
AACAACAACAAGACAACTCTAAGTCTGTCAGTCACATTGCACGTCTGCGG
GACAGCAATGAGTTCAAAGAGACTTTAGAGAAAATGAATTATTACTTAGA
GAATCCCAGGAGCCGAGACACTGTGATGGGTCCTGTTGAGGAAGACCCTG
AATACAAATTGATTGTAACGGCGAATAATTTGACAGcggaaatcgaaaat
gaaacaagTATCATTAATAAATATTGTAGGGATAACTATTCCAAACGATT
CCCAGAGTTGGATTCTCTTGTCACAAATGCCTTAGAATACATACAGACAG
TCCAAGCACTGGGTAATGATTTAGATTCaaataaaattgacaatttAGAC
TTTTTACCGCCAGCTACTCGTATGGTTGTCAGCGTTACAGCGGCAACCAC
ACAGGGCGAGCAAATCGGACAAAATGAACTGGATAATATCAACGAAgctt
gtcaaatgaatatggacttAGTAGatgctaaaatgaaaattttccaatat
GTAGAATCGAGAATGTCCTTTATTGCACCGAATGTGTCGGTAGTTATTGG
TGCTTCAACTGCAGCAAAACTTATGGGTATTGCTGGTGGCTTGACCAATT
TATCTAAAATGCCTTCTTGTAATATCATGCTGTTGGGATCTCAAAAGAAA
ACATTGTCCGGATTTTCGACAGCTTCTGCACAAGTGTTGCCACATACTGG
ATTCATTTACTACAGTGATATCGTTCAGGGTTTACCACCATATTTGCGAA
AGAAAGGAGCTCGACTGGCATCTGCTAAAGTAACATTAGCCGCTCGTATC
GATAGTTTTCACGAAAATCTTGATGGTTCTGCTGGTCGAAAACTCCTAGA
AGAAATCGAGAAGAAATTTGATAAGCTTCAAGAACCGCCCCCAGTCAAGG
ACGCCAAAGCTTTACCACGCCCAGATGACGCCCCACGCCAGAAGCGAGGT
GGAAAACGGGTCCGCAAGATGAAAGAAAAGTTTGCGATTACGGAAATGAG
GCGACAAGCTAGTCGCGTGACGTTTGGAGAAATTTCTGAAGATGTTTATC
AGCAGCATGTTGGATTTGGGATCGGCTCCTTGGCTAAGGAAAGTGCTTCG
GGTAAAATCAGGAACCCTAATGTTGATAAGAAGACGCAAGTTTCGATTTC
CAAACGTTTACAGAGAAATTTGGCGAATATGAACCAATCGTATGGTGGTA
AATCAACAGTGCGTGGTCAAGTCTCCGGTACTGCGTCCAGTGTGGCCTTC
ACACCTTTGCAAGGTATCGAAATTGTCAACCCGAAAGCTGCAGAAAAACG
TGTCCAAGAAGCTAATGCTAAATACTTTTCAAATCAAACGGGATTTTTTC
GTGTTAAGAAGAAAGATCAAACGAATGGTGAAAGTGCGACAAAAAGTTCA
GCTTCTTCGTCCTCAGTGACTTTTGCTAAACCAGCACCACTCAATAAATA
GTTATCATATTTCCGACGGAAATTTACTAAACAGTTGTTTGACTCTTCCA
GAAAAGGTTGGAGAAAAGGTGTCCCGGATGACTACTTAGAGAAAATTGGT
TATATATGACGTGCATCTTGTTAGGGTCCTCTTTTCAAACTCTATAATAA
CTAAACATGGTTGCAAAATCAACAAATTAAGAAAAGATATTTTAggtaat
tttttaaacatttttcacTTTAGGTTTTTCTCACTCAGGGACCAGATTTT
GTCTGTTAGGGTCAGATAGGATTCAAATTTATCTCAACTCCAGCGGCACC
CACTTCCCTGTGGATAACTGATCATTTTCTAGGTACCTGTCGGAAACACT
GTTTGTGGTAAAGGGTTATTTCTAAAATAACCTTTTAAAATCATCATCAT
TAAGTTAAGTTTCCAACCTCACATTTTAAAGGGACCCATGCTAGTCTAAA
TGGATAATATTATTGCTCTTAGCGCATTTGGATAATAATTTTAGGTCTTC
ACAatggttttttgttttttacttcCGAGACTTGCTGACTGGCTTGTTTT
ACCTCTAATGTACCTTTTATGGATTTTTATCTATAGTGTAATGTATTTTA
CAATTGCTTAGTTCTTCAAAGATTTCGTTTTTGAAGCTTGATTTTTTTAA
CTGTAAGTACGATGTCTTTATCACGAGAAAGCAAAGTTATAAAATCCCGA
ATTCATTAAAT
Run BLAST on NCBI

protein sequence of TCONS_00018932-protein

>TCONS_00018932-protein ID=TCONS_00018932-protein|Name=TCONS_00018932-protein|organism=Clytia hemisphaerica|type=polypeptide|length=521bp
MSLADELLADLDDIEDEEVTANVEDDGDIQEIMETDDLQQQQDNSKSVSH
IARLRDSNEFKETLEKMNYYLENPRSRDTVMGPVEEDPEYKLIVTANNLT
AEIENETSIINKYCRDNYSKRFPELDSLVTNALEYIQTVQALGNDLDSNK
IDNLDFLPPATRMVVSVTAATTQGEQIGQNELDNINEACQMNMDLVDAKM
KIFQYVESRMSFIAPNVSVVIGASTAAKLMGIAGGLTNLSKMPSCNIMLL
GSQKKTLSGFSTASAQVLPHTGFIYYSDIVQGLPPYLRKKGARLASAKVT
LAARIDSFHENLDGSAGRKLLEEIEKKFDKLQEPPPVKDAKALPRPDDAP
RQKRGGKRVRKMKEKFAITEMRRQASRVTFGEISEDVYQQHVGFGIGSLA
KESASGKIRNPNVDKKTQVSISKRLQRNLANMNQSYGGKSTVRGQVSGTA
SSVAFTPLQGIEIVNPKAAEKRVQEANAKYFSNQTGFFRVKKKDQTNGES
ATKSSASSSSVTFAKPAPLNK
Run BLAST on NCBI

transcript from alignment at sc0000313:51816..54992-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00018932 ID=TCONS_00018932|Name=TCONS_00018932|organism=Clytia hemisphaerica|type=transcript|length=3177bp|location=Sequence derived from alignment at sc0000313:51816..54992- (Clytia hemisphaerica)
GGATACTATTCATCTACTCTTGTTTATTATACGAAAGAGTAATATGTTTT TGCCTTCCTTTGTCAATTTTCTTTACCTGGTACTCATTCTTTCTCATTTC TTGTTTTTTAGTGTAGGTACATAAAAAAGAACAAAATGTCTTTGGCGGAT GAATTATTAGCAGATCTTGATGACATTGAGGATGAAGAGGTTACAGCCAA TGTTGAGGATGATGGTGATATCCAGGAGATTATGGAGACAGATGATCTCC AACAACAACAAGACAACTCTAAGTCTGTCAGTCACATTGCACGTCTGCGG GACAGCAATGAGTTCAAAGAGACTTTAGAGAAAATGAATTATTACTTAGA GAATCCCAGGAGCCGAGACACTGTGATGGGTCCTGTTGAGGAAGACCCTG AATACAAATTGATTGTAACGGCGAATAATTTGACAGCGGAAATCGAAAAT GAAACAAGTATCATTAATAAATATTGTAGGGATAACTATTCCAAACGATT CCCAGAGTTGGATTCTCTTGTCACAAATGCCTTAGAATACATACAGACAG TCCAAGCACTGGGTAATGATTTAGATTCAAATAAAATTGACAATTTAGAC TTTTTACCGCCAGCTACTCGTATGGTTGTCAGCGTTACAGCGGCAACCAC ACAGGGCGAGCAAATCGGACAAAATGAACTGGATAATATCAACGAAGCTT GTCAAATGAATATGGACTTAGTAGATGCTAAAATGAAAATTTTCCAATAT GTAGAATCGAGAATGTCCTTTATTGCACCGAATGTGTCGGTAGTTATTGG TGCTTCAACTGCAGCAAAACTTATGGGTATTGCTGGTGGCTTGACCAATT TATCTAAAATGCCTTCTTGTAATATCATGCTGTTGGGATCTCAAAAGAAA ACATTGTCCGGATTTTCGACAGCTTCTGCACAAGTGTTGCCACATACTGG ATTCATTTACTACAGTGATATCGTTCAGGTAATATCGATATTATTGCACC GAATTTTCTCTTGTTTTTTACTTTTGTCAACTTTCAGTTTTAACTCTTTT CCACACTCAGGAGATTTGAGGAGTTTTACATTTTCTGGAATAAATGATAT CTGGTTTTGTTTCTCTTTAGTGATTTTCGATGGGGAAATTTTTTTAATTT GTTAGAGATACGATATATACGATACTTCTCAGGAAGACGTAAGTGGCAAG AAATAAAGTAATACTCTCTGTGTTTAAACTTCTTCCGTCTCATACGGATT TCCGTCTGTAGTGAATTAAATAAAGAGGGATTTCCGTCTCAGACCACTGA CTAGTGTTGTAATAAAAGGGATGACTTTTCTTCCTATCAGGGTTTACCAC CATATTTGCGAAAGAAAGGAGCTCGACTGGCATCTGCTAAAGTAACATTA GCCGCTCGTATCGATAGTTTTCACGAAAATCTTGATGGTTCTGCTGGTCG AAAACTCCTAGAAGAAATCGAGAAGAAATTTGATAAGCTTCAAGAACCGC CCCCAGTCAAGGACGCCAAAGCTTTACCACGCCCAGATGACGCCCCACGC CAGAAGCGAGGTGGAAAACGGGTCCGCAAGATGAAAGAAAAGTTTGCGAT TACGGAAATGAGGCGACAAGCTAGTCGCGTGACGTTTGGAGAAATTTCTG AAGATGTTTATCAGCAGCATGTTGGATTTGGGATCGGCTCCTTGGCTAAG GAAAGTGCTTCGGGTAAAATCAGGAACCCTAATGTTGATAAGAAGACGCA AGTTTCGATTTCCAAACGTTTACAGGTATGGATACTTCTTGTCATTATAA ATGAGTGTTGCAATTTTCCCGTCTGTAGGCGGAAATGCGTTCAGCTGAGA TTTTTCACTTTAGTCTTCTATAAACCTTGGAAGAGCGAAATTCTTAAATG GTGATTGCAACACTGATAAATGACTGTTGCATTTACAGTAAAATTTAACA GTGTTCGAATTTCTTCCGATCACAGACAGATTTGCCCCTCAGTGAAGCAC ATTCCGCTAAAAAATTCGATTTAAAAAGATCTCATAACAAAAACTTGTGT TTTTTGGTTTTATGTATGCTACAAATAAAACAAAACGGTATTTTTATGCG AAAAAGGATACGAGGGGAGGGTTCTCATTAATACTTAACATTAATTGTCA CTGATTTTTCTTCTTCTTTCACATAACAGAGAAATTTGGCGAATATGAAC CAATCGTATGGTGGTAAATCAACAGTGCGTGGTCAAGTCTCCGGTACTGC GTCCAGTGTGGCCTTCACACCTTTGCAAGGTATCGAAATTGTCAACCCGA AAGCTGCAGAAAAACGTGTCCAAGAAGCTAATGCTAAATACTTTTCAAAT CAAACGGGATTTTTTCGTGTTAAGAAGAAAGATCAAACGAATGGTGAAAG TGCGACAAAAAGTTCAGCTTCTTCGTCCTCAGTGACTTTTGCTAAACCAG CACCACTCAATAAATAGTTATCATATTTCCGACGGAAATTTACTAAACAG TTGTTTGACTCTTCCAGAAAAGGTTGGAGAAAAGGTGTCCCGGATGACTA CTTAGAGAAAATTGGTTATATATGACGTGCATCTTGTTAGGGTCCTCTTT TCAAACTCTATAATAACTAAACATGGTTGCAAAATCAACAAATTAAGAAA AGATATTTTAGGTAATTTTTTAAACATTTTTCACTTTAGGTTTTTCTCAC TCAGGGACCAGATTTTGTCTGTTAGGGTCAGATAGGATTCAAATTTATCT CAACTCCAGCGGCACCCACTTCCCTGTGGATAACTGATCATTTTCTAGGT ACCTGTCGGAAACACTGTTTGTGGTAAAGGGTTATTTCTAAAATAACCTT TTAAAATCATCATCATTAAGTTAAGTTTCCAACCTCACATTTTAAAGGGA CCCATGCTAGTCTAAATGGATAATATTATTGCTCTTAGCGCATTTGGATA ATAATTTTAGGTCTTCACAATGGTTTTTTGTTTTTTACTTCCGAGACTTG CTGACTGGCTTGTTTTACCTCTAATGTACCTTTTATGGATTTTTATCTAT AGTGTAATGTATTTTACAATTGCTTAGTTCTTCAAAGATTTCGTTTTTGA AGCTTGATTTTTTTAACTGTAAGTACGATGTCTTTATCACGAGAAAGCAA AGTTATAAAATCCCGAATTCATTAAAT

Coding sequence (CDS) from alignment at sc0000313:51816..54992-

>TCONS_00018932 ID=TCONS_00018932|Name=TCONS_00018932|organism=Clytia hemisphaerica|type=CDS|length=4698bp|location=Sequence derived from alignment at sc0000313:51816..54992- (Clytia hemisphaerica)
AGAAATTTGGCGAATATGAACCAATCGTATGGTGGTAAATCAACAGTGCG
TGGTCAAGTCTCCGGTACTGCGTCCAGTGTGGCCTTCACACCTTTGCAAG
GTATCGAAATTGTCAACCCGAAAGCTGCAGAAAAACGTGTCCAAGAAGCT
AATGCTAAATACTTTTCAAATCAAACGGGATTTTTTCGTGTTAAGAAGAA
AGATCAAACGAATGGTGAAAGTGCGACAAAAAGTTCAGCTTCTTCGTCCT
CAGTGACTTTTGCTAAACCAGCACCACTCAATAAATAGGGTTTACCACCA
TATTTGCGAAAGAAAGGAGCTCGACTGGCATCTGCTAAAGTAACATTAGC
CGCTCGTATCGATAGTTTTCACGAAAATCTTGATGGTTCTGCTGGTCGAA
AACTCCTAGAAGAAATCGAGAAGAAATTTGATAAGCTTCAAGAACCGCCC
CCAGTCAAGGACGCCAAAGCTTTACCACGCCCAGATGACGCCCCACGCCA
GAAGCGAGGTGGAAAACGGGTCCGCAAGATGAAAGAAAAGTTTGCGATTA
CGGAAATGAGGCGACAAGCTAGTCGCGTGACGTTTGGAGAAATTTCTGAA
GATGTTTATCAGCAGCATGTTGGATTTGGGATCGGCTCCTTGGCTAAGGA
AAGTGCTTCGGGTAAAATCAGGAACCCTAATGTTGATAAGAAGACGCAAG
TTTCGATTTCCAAACGTTTACAGATGTCTTTGGCGGATGAATTATTAGCA
GATCTTGATGACATTGAGGATGAAGAGGTTACAGCCAATGTTGAGGATGA
TGGTGATATCCAGGAGATTATGGAGACAGATGATCTCCAACAACAACAAG
ACAACTCTAAGTCTGTCAGTCACATTGCACGTCTGCGGGACAGCAATGAG
TTCAAAGAGACTTTAGAGAAAATGAATTATTACTTAGAGAATCCCAGGAG
CCGAGACACTGTGATGGGTCCTGTTGAGGAAGACCCTGAATACAAATTGA
TTGTAACGGCGAATAATTTGACAGCGGAAATCGAAAATGAAACAAGTATC
ATTAATAAATATTGTAGGGATAACTATTCCAAACGATTCCCAGAGTTGGA
TTCTCTTGTCACAAATGCCTTAGAATACATACAGACAGTCCAAGCACTGG
GTAATGATTTAGATTCAAATAAAATTGACAATTTAGACTTTTTACCGCCA
GCTACTCGTATGGTTGTCAGCGTTACAGCGGCAACCACACAGGGCGAGCA
AATCGGACAAAATGAACTGGATAATATCAACGAAGCTTGTCAAATGAATA
TGGACTTAGTAGATGCTAAAATGAAAATTTTCCAATATGTAGAATCGAGA
ATGTCCTTTATTGCACCGAATGTGTCGGTAGTTATTGGTGCTTCAACTGC
AGCAAAACTTATGGGTATTGCTGGTGGCTTGACCAATTTATCTAAAATGC
CTTCTTGTAATATCATGCTGTTGGGATCTCAAAAGAAAACATTGTCCGGA
TTTTCGACAGCTTCTGCACAAGTGTTGCCACATACTGGATTCATTTACTA
CAGTGATATCGTTCAGAGAAATTTGGCGAATATGAACCAATCGTATGGTG
GTAAATCAACAGTGCGTGGTCAAGTCTCCGGTACTGCGTCCAGTGTGGCC
TTCACACCTTTGCAAGGTATCGAAATTGTCAACCCGAAAGCTGCAGAAAA
ACGTGTCCAAGAAGCTAATGCTAAATACTTTTCAAATCAAACGGGATTTT
TTCGTGTTAAGAAGAAAGATCAAACGAATGGTGAAAGTGCGACAAAAAGT
TCAGCTTCTTCGTCCTCAGTGACTTTTGCTAAACCAGCACCACTCAATAA
ATAGGGTTTACCACCATATTTGCGAAAGAAAGGAGCTCGACTGGCATCTG
CTAAAGTAACATTAGCCGCTCGTATCGATAGTTTTCACGAAAATCTTGAT
GGTTCTGCTGGTCGAAAACTCCTAGAAGAAATCGAGAAGAAATTTGATAA
GCTTCAAGAACCGCCCCCAGTCAAGGACGCCAAAGCTTTACCACGCCCAG
ATGACGCCCCACGCCAGAAGCGAGGTGGAAAACGGGTCCGCAAGATGAAA
GAAAAGTTTGCGATTACGGAAATGAGGCGACAAGCTAGTCGCGTGACGTT
TGGAGAAATTTCTGAAGATGTTTATCAGCAGCATGTTGGATTTGGGATCG
GCTCCTTGGCTAAGGAAAGTGCTTCGGGTAAAATCAGGAACCCTAATGTT
GATAAGAAGACGCAAGTTTCGATTTCCAAACGTTTACAGATGTCTTTGGC
GGATGAATTATTAGCAGATCTTGATGACATTGAGGATGAAGAGGTTACAG
CCAATGTTGAGGATGATGGTGATATCCAGGAGATTATGGAGACAGATGAT
CTCCAACAACAACAAGACAACTCTAAGTCTGTCAGTCACATTGCACGTCT
GCGGGACAGCAATGAGTTCAAAGAGACTTTAGAGAAAATGAATTATTACT
TAGAGAATCCCAGGAGCCGAGACACTGTGATGGGTCCTGTTGAGGAAGAC
CCTGAATACAAATTGATTGTAACGGCGAATAATTTGACAGCGGAAATCGA
AAATGAAACAAGTATCATTAATAAATATTGTAGGGATAACTATTCCAAAC
GATTCCCAGAGTTGGATTCTCTTGTCACAAATGCCTTAGAATACATACAG
ACAGTCCAAGCACTGGGTAATGATTTAGATTCAAATAAAATTGACAATTT
AGACTTTTTACCGCCAGCTACTCGTATGGTTGTCAGCGTTACAGCGGCAA
CCACACAGGGCGAGCAAATCGGACAAAATGAACTGGATAATATCAACGAA
GCTTGTCAAATGAATATGGACTTAGTAGATGCTAAAATGAAAATTTTCCA
ATATGTAGAATCGAGAATGTCCTTTATTGCACCGAATGTGTCGGTAGTTA
TTGGTGCTTCAACTGCAGCAAAACTTATGGGTATTGCTGGTGGCTTGACC
AATTTATCTAAAATGCCTTCTTGTAATATCATGCTGTTGGGATCTCAAAA
GAAAACATTGTCCGGATTTTCGACAGCTTCTGCACAAGTGTTGCCACATA
CTGGATTCATTTACTACAGTGATATCGTTCAGAGAAATTTGGCGAATATG
AACCAATCGTATGGTGGTAAATCAACAGTGCGTGGTCAAGTCTCCGGTAC
TGCGTCCAGTGTGGCCTTCACACCTTTGCAAGGTATCGAAATTGTCAACC
CGAAAGCTGCAGAAAAACGTGTCCAAGAAGCTAATGCTAAATACTTTTCA
AATCAAACGGGATTTTTTCGTGTTAAGAAGAAAGATCAAACGAATGGTGA
AAGTGCGACAAAAAGTTCAGCTTCTTCGTCCTCAGTGACTTTTGCTAAAC
CAGCACCACTCAATAAATAGGGTTTACCACCATATTTGCGAAAGAAAGGA
GCTCGACTGGCATCTGCTAAAGTAACATTAGCCGCTCGTATCGATAGTTT
TCACGAAAATCTTGATGGTTCTGCTGGTCGAAAACTCCTAGAAGAAATCG
AGAAGAAATTTGATAAGCTTCAAGAACCGCCCCCAGTCAAGGACGCCAAA
GCTTTACCACGCCCAGATGACGCCCCACGCCAGAAGCGAGGTGGAAAACG
GGTCCGCAAGATGAAAGAAAAGTTTGCGATTACGGAAATGAGGCGACAAG
CTAGTCGCGTGACGTTTGGAGAAATTTCTGAAGATGTTTATCAGCAGCAT
GTTGGATTTGGGATCGGCTCCTTGGCTAAGGAAAGTGCTTCGGGTAAAAT
CAGGAACCCTAATGTTGATAAGAAGACGCAAGTTTCGATTTCCAAACGTT
TACAGATGTCTTTGGCGGATGAATTATTAGCAGATCTTGATGACATTGAG
GATGAAGAGGTTACAGCCAATGTTGAGGATGATGGTGATATCCAGGAGAT
TATGGAGACAGATGATCTCCAACAACAACAAGACAACTCTAAGTCTGTCA
GTCACATTGCACGTCTGCGGGACAGCAATGAGTTCAAAGAGACTTTAGAG
AAAATGAATTATTACTTAGAGAATCCCAGGAGCCGAGACACTGTGATGGG
TCCTGTTGAGGAAGACCCTGAATACAAATTGATTGTAACGGCGAATAATT
TGACAGCGGAAATCGAAAATGAAACAAGTATCATTAATAAATATTGTAGG
GATAACTATTCCAAACGATTCCCAGAGTTGGATTCTCTTGTCACAAATGC
CTTAGAATACATACAGACAGTCCAAGCACTGGGTAATGATTTAGATTCAA
ATAAAATTGACAATTTAGACTTTTTACCGCCAGCTACTCGTATGGTTGTC
AGCGTTACAGCGGCAACCACACAGGGCGAGCAAATCGGACAAAATGAACT
GGATAATATCAACGAAGCTTGTCAAATGAATATGGACTTAGTAGATGCTA
AAATGAAAATTTTCCAATATGTAGAATCGAGAATGTCCTTTATTGCACCG
AATGTGTCGGTAGTTATTGGTGCTTCAACTGCAGCAAAACTTATGGGTAT
TGCTGGTGGCTTGACCAATTTATCTAAAATGCCTTCTTGTAATATCATGC
TGTTGGGATCTCAAAAGAAAACATTGTCCGGATTTTCGACAGCTTCTGCA
CAAGTGTTGCCACATACTGGATTCATTTACTACAGTGATATCGTTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_010612XLOC_010612Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018932-proteinTCONS_00018932-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00018932-exon-sc0000313-1575043694:54015..54992TCONS_00018932-exon-sc0000313-1575043694:54015..54992Clytia hemisphaericaexon
TCONS_00018932-exon-sc0000313-1575043694:53218..53652TCONS_00018932-exon-sc0000313-1575043694:53218..53652Clytia hemisphaericaexon
TCONS_00018932-exon-sc0000313-1575043694:51816..52813TCONS_00018932-exon-sc0000313-1575043694:51816..52813Clytia hemisphaericaexon
TCONS_00018932-exon-sc0000313-1510915933:54015..54992TCONS_00018932-exon-sc0000313-1510915933:54015..54992Clytia hemisphaericaexon
TCONS_00018932-exon-sc0000313-1510915933:53218..53652TCONS_00018932-exon-sc0000313-1510915933:53218..53652Clytia hemisphaericaexon
TCONS_00018932-exon-sc0000313-1510915933:51816..52813TCONS_00018932-exon-sc0000313-1510915933:51816..52813Clytia hemisphaericaexon
TCONS_00018932-exon-sc0000313-1491911889:54015..54992TCONS_00018932-exon-sc0000313-1491911889:54015..54992Clytia hemisphaericaexon
TCONS_00018932-exon-sc0000313-1491911889:53218..53652TCONS_00018932-exon-sc0000313-1491911889:53218..53652Clytia hemisphaericaexon
TCONS_00018932-exon-sc0000313-1491911889:51816..52813TCONS_00018932-exon-sc0000313-1491911889:51816..52813Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000313supercontigsc0000313:51816..54992 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.7432 14.3445 11.6204 13.6175 82.7814 63.0971 32.7488 39.5989 28.4708 34.2062 25.5458 17.1684 15.5158 16.2468 16.3579 18.4479 21.4806 19.8102 4.69279 6.07561 13.6927 13.6768 45.3333 41.4161 16.5891 21.3821 12.946 8.84152 30.6508 33.0503
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR012976NOSIC
IPR019175Prp31_C
IPR002687Nop_dom
Blast
BLAST of TCONS_00018932 vs. Swiss-Prot (Human)
Match: PRP31 (U4/U6 small nuclear ribonucleoprotein Prp31 OS=Homo sapiens GN=PRPF31 PE=1 SV=2)

HSP 1 Score: 531.561 bits (1368), Expect = 1.467e-180
Identity = 281/465 (60.43%), Postives = 354/465 (76.13%), Query Frame = 1
Query:  220 IQEIMETDDLQQQQDNSKSVSHIARLRDSNEFKETLEKMNYYLENPRSRDTVMGPVEEDPEYKLIVTANNLTAEIENETSIINKYCRDNYSKRFPELDSLVTNALEYIQTVQALGNDLDSNKI-DNLD-FLPPATRMVVSVTAATTQGEQIGQNELDNINEACQMNMDLVDAKMKIFQYVESRMSFIAPNVSVVIGASTAAKLMGIAGGLTNLSKMPSCNIMLLGSQKKTLSGFSTASAQVLPHTGFIYYSDIVQGLPPYLRKKGARLASAKVTLAARIDSFHENLDGSAGRKLLEEIEKKFDKLQEPPPVKDAKALPRPDDAPRQKRGGKRVRKMKEKFAITEMRRQASRVTFGEISEDVYQQHVGFGIGSLAKESASGKIRNPNVDKKTQVSISKRLQRNLANMNQSYGGKSTVRGQVSGTASSVAFTPLQGIEIVNPKAAEKRVQEANAKYFSNQTGFFRVK 1608
            I+++ E   L    D   SV  IA+L DS  F E + K+  Y+        VMGPVE  PEY++IV ANNLT EIENE +II+K+ RD YSKRFPEL+SLV NAL+YI+TV+ LGN LD  K  +NL   L  AT MVVSVTA+TTQG+Q+ + EL+ + EAC M ++L  +K +I++YVESRMSFIAPN+S++IGASTAAK+MG+AGGLTNLSKMP+CNIMLLG+Q+KTLSGFS+ S  VLPHTG+IY+SDIVQ LPP LR+K ARL +AK TLAAR+DSFHE+ +G  G +L +EIE+KFDK QEPPPVK  K LP P D  R+KRGG+R RKMKE+  +TE+R+QA+R++FGEI ED YQ+ +GF +G L K S SG++R   V++ T+  ISK LQR L   +  YGGKST+R + SGTASSVAFTPLQG+EIVNP+AAEK+V EAN KYFS+   F +VK
Sbjct:   32 IEDVQEETQLDLSGD---SVKTIAKLWDSKMFAEIMMKIEEYISKQAKASEVMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVKELGNSLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLSEEELERLEEACDMALELNASKHRIYEYVESRMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSSTS--VLPHTGYIYHSDIVQSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKWQEPPPVKQVKPLPAPLDGQRKKRGGRRYRKMKERLGLTEIRKQANRMSFGEIEEDAYQEDLGFSLGHLGK-SGSGRVRQTQVNEATKARISKTLQRTLQKQSVVYGGKSTIRDRSSGTASSVAFTPLQGLEIVNPQAAEKKVAEANQKYFSSMAEFLKVK 490          
The following BLAST results are available for this feature:
BLAST of TCONS_00018932 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
PRP311.467e-18060.43U4/U6 small nuclear ribonucleoprotein Prp31 OS=Hom... [more]
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